KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:58 2014 Check: 00 .. Name: ENSP00000326550/1-838 Len: 1081 Check: 4281 Weight: 1.00 Name: ENSBTAP00000052867/1-810 Len: 1081 Check: 8827 Weight: 1.00 Name: ENSTTRP00000010364/1-759 Len: 1081 Check: 2740 Weight: 1.00 Name: bmy_05472T0/1-994 Len: 1081 Check: 9484 Weight: 1.00 Name: BACU009128/1-773 Len: 1081 Check: 4724 Weight: 1.00 // 1 50 ENSP00000326550/1-838 MSLQVLNDKN VSNEKNTENC DFLFSPPEVT GRSSVLRVSQ KENVPPKNLA ENSBTAP00000052867/1-810 MSLHLFSDEN VTGDKSRENC DFLFSPPELT GRASVLRLSQ KENVPPKSTA ENSTTRP00000010364/1-759 MSLHVFSDEN VTGDKSTENC DFLFSPLELT GRSSVLRLSQ KENVPPKSTA bmy_05472T0/1-994 MSLHIFSDEN VTGDKSTENC DFLFSPPELT GRSSVLRLSQ KENVPPKSTA BACU009128/1-773 MSLHIFSDEN VTGDKSTENC DFLFSPPELT GRSSVLRLSQ KENVPPKSTA 51 100 ENSP00000326550/1-838 KAMKVTFQTP LRDPQTHRIL SPSMASKLEA PFTQDDTLGL ENSHPVWTQK ENSBTAP00000052867/1-810 KTVKVTFQTP LRDPQTYRIL SPSVGSKLEA CFVLGDPIEL ENCHQVCTQK ENSTTRP00000010364/1-759 KAMKVTFQTP LRDPQTHRIL SPSTGSKLEA CFALGDTIGL ENC-QVWTQK bmy_05472T0/1-994 KAMKVTFQTP LRDPQTHRIL SPSTGSKLEA CFALGDTIGL ENCHQVWTQK BACU009128/1-773 KAMKVTFQTP LRDPQTHRIL SPSTGSKLEA CFALGDTIGL ENCHQVWTQK 101 150 ENSP00000326550/1-838 ENQQLIKEVD AKTTHGILQK PVEADTDLLG -DASPAFGSG SSSESGPGAL ENSBTAP00000052867/1-810 ENQQFTKETD TKTTHGILQK PVPVNTEPPS EDMRPVSEDQ PPGGPPSAPL ENSTTRP00000010364/1-759 ENQQFTKETD TRTTNGILQK PAVADANPAS EDMRPASDDR NRSGPSSAPQ bmy_05472T0/1-994 ENQQFTKETD TRTTNGXLQK PAVADANPPS EDMRPASDDR RRSGPSLAPL BACU009128/1-773 ENQQFTKETD TRTTNGILQK PAVADANPPS EDMRPASDDR CRSGPSLAPL 151 200 ENSP00000326550/1-838 ADLDCSSSSQ SPGSSENQMV SPGKVSGSPE QAVEENLSSY SLDRRVTPAS ENSBTAP00000052867/1-810 VSLGPSSSSQ IPESVENPEA SRGPAPGSPE CAREEHVHPW PSEESMPLGP ENSTTRP00000010364/1-759 ACLDPASSSQ MPESVETPEA SPGQTSGSPE PTQEEHVHPH SLEESATSTS bmy_05472T0/1-994 ACLDHASSSQ MPESVENPEA SPGQTSGSPE HTQEERVHPH SLEESATSTS BACU009128/1-773 ACLDPASSSQ MPESVENPEA SPGQMSGSPE HTQEEHVHPH SLEESATSTS 201 250 ENSP00000326550/1-838 ETLEDPCRTE SQHKAETPHG AEEECKAETP HGAEEECRHG GVCAPAAVAT ENSBTAP00000052867/1-810 MAPEQPSGVV SQDTAEDPLS GTGG------ -------DSE GVPGPPARPA ENSTTRP00000010364/1-759 TILEDPPGMA SQDRTEDPLR ATG------- --------TR GLPAPSAGAA bmy_05472T0/1-994 TILEDPPGMA SQXRTEDPLR ATGE------ -------NSS GVPAPSAGAA BACU009128/1-773 TILEDPPGMA SQDRTEDLLR ATGE------ -------NSS GVPAPSAGAA 251 300 ENSP00000326550/1-838 SPPGAIPKEA CGGAPLQGLP GEALGCPAGV GTPVPADGTQ TLTCAHTSAP ENSBTAP00000052867/1-810 SPCGAPP--- -GEKPLVDLP GAA---PVG- ---------- ---SMDATSR ENSTTRP00000010364/1-759 SAPGTHPGGA RGAEPLVDLP SE-------- ---------- ---------- bmy_05472T0/1-994 SAPRTHPGGA RGAEPLVDLP GEA---PAG- ---------- ---SKVTASR BACU009128/1-773 SAPSTHPGGA RGAEPLVDLP GEA---PAG- ---------- ---SKVTASR 301 350 ENSP00000326550/1-838 ESTAPTNHLV AGRAMTLSPQ EEVAAGQMAS SSRSGPVKLE FDVSDGATSK ENSBTAP00000052867/1-810 EDTALTGPGE AAGATHPGAQ GEETCGQAAS SLRSGPVRLE FDFSDA-TGK ENSTTRP00000010364/1-759 ---APAGPVE AGGATFPSPQ KEEAEGQTAD SLRSEPVRLE FDFSDG-TIK bmy_05472T0/1-994 EDTAPAGPVE AGGATFPSPQ REEAEGQTAD SLRSEPIRLE FDFSDA-TSK BACU009128/1-773 EDTAPAGPVE ARGAKFPSPQ REEAEGQTAD SSRSEPIRLE FDFSDA-TSK 351 400 ENSP00000326550/1-838 RAPPPRRLGE RSGLKPPLRK AAVRQQKAPQ EVEEDDGRSG AGEDPPMPAS ENSBTAP00000052867/1-810 RSPPLRKRGK ALGLKPPSRR PEARP---GK ATLE----AG KGCELTL--- ENSTTRP00000010364/1-759 GPPPLRKRGK TPALRPPSRR PEARQEKEEK ALVE----AG EGPDPPP--- bmy_05472T0/1-994 RPPPLRKRGK TPALRPPSRR PEARQEKEEK ALME----AG EGPDPPP--- BACU009128/1-773 RPPPLRKQGK TPALRPPSRR PAARQEKEEK ALME----AG EGPDPPP--- 401 450 ENSP00000326550/1-838 RGSYHLDWDK MDDPNFIPFG GDTKSGCSEA QPPESPETRL GQPAAEQLHA ENSBTAP00000052867/1-810 RGSDGPSWDK PDDPDCNPAA DS-----GEA RPLEHPQS-- ---------- ENSTTRP00000010364/1-759 RGSNSLDQDK LDDPDCNPTG GD-----GEA QPPEHPKS-- ---------- bmy_05472T0/1-994 RGSNSLDRGK LDDPDCNPAG GD-----GEA RRPEHPRS-- ---------- BACU009128/1-773 HGSNSLDRGK LDDPDCNPAG GD-----GEA QPPEHPRS-- ---------- 451 500 ENSP00000326550/1-838 GPATEEPGPC LSQQLHSASA EDTPVVQLAA ETPTAESK-- ---------- ENSBTAP00000052867/1-810 GQATEALSL- -SRQ---ACS DDTPGTRAPA RTPGAAGEGW T--------- ENSTTRP00000010364/1-759 RP-------- ---QVLLASA DDTPALQTSA GTAEAAGE-- ---------- bmy_05472T0/1-994 GPATEASSP- -SRQVLLASA DDTPGAQTSA GTAEAAGEVW VWAGVLRLLP BACU009128/1-773 GPATEASSP- -SRQVLLASA DDTPGAQTSA GTAEAAGEVR VWAGVLMLLP 501 550 ENSP00000326550/1-838 -----ERALN SASTS----- ---------- ----LPTSCP GSEP--VPTH ENSBTAP00000052867/1-810 -----TGSLG GSA------- ---------- -----PLSSP SSEPPTAPTN ENSTTRP00000010364/1-759 -----EGTTD ASGAS----- ---------- ----APTSSP GSEPPTVPTH bmy_05472T0/1-994 RLRIVTGQRQ AGGAPGLGGG TRCFPRSPTP PRLDEPPRSP GSKPPTVPTD BACU009128/1-773 RLRIVTGQRQ ---------- ---------- -----AVLAA GAELDLVSAG 551 600 ENSP00000326550/1-838 ------QQGQ PALELKEESF RDPAE----- ---------- ---------- ENSBTAP00000052867/1-810 PTPPTERGPE PTLDLNGEQF RDPAE----- ---------- ---------- ENSTTRP00000010364/1-759 P-----QGPE PGLDLSGEHF WDPAE----- ---------- ---------- bmy_05472T0/1-994 PTPPTPRGPE PGLDLSREHF RDPAEGTLFT VLEARGTPLV VTPPGVLSTP BACU009128/1-773 -------HPA RGMRLAADVS LS-------- ---------- ---------- 601 650 ENSP00000326550/1-838 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052867/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010364/1-759 ---------- ---------- ---------- ---------- ---------- bmy_05472T0/1-994 CGTRHGPTEP SSPKRPEPED SNPALAVSQE WTGRGATPCA QPECWRRGAE BACU009128/1-773 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000326550/1-838 ---------- ---------- --------VL GTGAEVDYLE QFGTSSFKES ENSBTAP00000052867/1-810 ---------- ---------- --------VL GAGAELDYLE QFGAPSFKES ENSTTRP00000010364/1-759 ---------- ---------- --------VL GTGAEVDYLE QFGASSFKES bmy_05472T0/1-994 LALVSPEHPT RGEGAARGMR LAAGVSLSVL GTGAEVDYLE QFGASSFKES BACU009128/1-773 ---------- ---------- --------VL GTGAEVDYLE QFGASSFKES 701 750 ENSP00000326550/1-838 ALRKQSLYLK FDPLLRDSPG RPVPVA---- ---TETSS-- ---------- ENSBTAP00000052867/1-810 ALRKQSLYLN FDPLLQDSPQ GLTPSSSGRP RGLPVPSAGP LASEESPGLM ENSTTRP00000010364/1-759 ALRKQSLYLK FDPLLQDSPR GPAPVA---- ---PEPSS-- ---------- bmy_05472T0/1-994 ALRKQSLYLK FDPLLQDSPR GPAPVA---- ---PEPSS-- ---------- BACU009128/1-773 ALRKQSLYLK FDPLLQDSPR GPAPVA---- ---PEPSS-- ---------- 751 800 ENSP00000326550/1-838 ---------- -MHGANETPS GRPREAKLVE FDFLGALDIP VPGPP----- ENSBTAP00000052867/1-810 QTAGGFSLGL RARSVDKPSS GSPPEAQLLD LDFPGAPGIP IPGLA----- ENSTTRP00000010364/1-759 ---------- -ARGTDAHSS GSPPEAQLLD LDFAGAPDVP TLGPA----- bmy_05472T0/1-994 ---------- -ARGTDPHSS GSPLEAQLLD LDFAGAPGVP VSGPSPLWCK BACU009128/1-773 ---------- -ARGTDAHSS GSPLEAQLLD LDFAGAPGIP LLGPA----- 801 850 ENSP00000326550/1-838 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052867/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010364/1-759 ---------- ---------- ---------- ---------- ---------- bmy_05472T0/1-994 ETPKGPAFTC CGSEGLRGPL ARGAAPGCAV PSGEPTGQRG VPGELAAQPV BACU009128/1-773 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000326550/1-838 ---------- PGVPAPGGPP LSTGPIVDLL QYSQKDLDAV VKATQEENRE ENSBTAP00000052867/1-810 ---------- PCDLGPGAPL LPVGPIVDVL QYSQKDLDSA VEATQKENEV ENSTTRP00000010364/1-759 ---------- PCDLGPRAPL LPVGPIVDVL QYSQKDLDTA VGATQKENEA bmy_05472T0/1-994 SVALQMLGPA PCDLGPRAPL LPVGPIVDVL QYSQKDLDTA VGAMQKENEA BACU009128/1-773 ---------- PCDLGPRAPL LPVGPIVDVL QYSQKDLDTA VGAMQKENEA 901 950 ENSP00000326550/1-838 LRSRCEELHG KNLELGKIMD RFEEVVYQAM EEVQKQKELS KAEIQKVLKE ENSBTAP00000052867/1-810 LRGKCAALQE RLLEMGKIMD SFEGTVYQVM EESQKQKELT KAEMQKVLKE ENSTTRP00000010364/1-759 LRVRCTALQE KILEMGKIMD AFEGTVYQAM EEAQKQKELA KAEIQKVLRD bmy_05472T0/1-994 LRGRCTALQE KILEMGKIMD GFEGTVYQAM EEAQKQKELA KAEIQKVLRE BACU009128/1-773 LRGRCTALQE KILEMGKIMD GFEGTVYQAM EEAQKQKELA KAEIQKVLKE 951 1000 ENSP00000326550/1-838 KDQLTTDLNS MEKSFSDLFK RFEKQKEVIE GYRKNEESLK KCVEDYLARI ENSBTAP00000052867/1-810 KAQLTADLHS MEKSFSDLFK RFEKQKEVIE GYRTNEESLK KCVEDYIERV ENSTTRP00000010364/1-759 RDQLTADLHS TEKSFSDLFK RFEKQKEVIE GYRTNEESLK KCVEDYIGRI bmy_05472T0/1-994 KDQLTADLHS MEKSFSDLFK RFEKQKEVIE GYRTNEESLK KCVEDSIGRI BACU009128/1-773 KDQLTADLHS MEKSFSDLFK RFEKQKDVIE GYRT------ ---------- 1001 1050 ENSP00000326550/1-838 TQEGQRYQAL KAHAEEKLQL ANEEIAQVRS KAQAEALALQ ASLRKEQMRI ENSBTAP00000052867/1-810 EKEAQKYQAL KAQAEEKLRQ ASEEIAQVRS KAQTDALALQ AVLRKEQMRV ENSTTRP00000010364/1-759 EKEGQRYQAL KAHAEEKLQL ANEEITQVRS KAQAEALALQ AVLRKEQMRV bmy_05472T0/1-994 EKEGQRYQAL KAHAEEKLQL ANEEITQVRS KAQAEALALQ AVLRKEQMRV BACU009128/1-773 --EGQRYQAL KAHAEEKLQL ANEEITQVRS KAQAEALALQ AVLRKEQMRV 1051 1100 ENSP00000326550/1-838 QSLEKTVEQK TKENEELTRI CDDLISKMEK I ENSBTAP00000052867/1-810 HSLEKVVEQK TKENDELTRI CDDLISKMKR I ENSTTRP00000010364/1-759 HSLEKVVEQK TKENDELTRI CDDLISKMER I bmy_05472T0/1-994 HSLEKVVEQK TKENDELTRI CDDLISKMER I BACU009128/1-773 HSLEKVVEQK TKENDELTRI CDDLISKMER I