KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:01:58 2014 Check: 00 .. Name: ENSP00000331106/1-305 Len: 373 Check: 5715 Weight: 1.00 Name: ENSBTAP00000052887/1-268 Len: 373 Check: 5157 Weight: 1.00 Name: ENSTTRP00000005324/1-322 Len: 373 Check: 1793 Weight: 1.00 Name: bmy_08975T0/1-253 Len: 373 Check: 1859 Weight: 1.00 Name: BACU007535/1-295 Len: 373 Check: 1608 Weight: 1.00 // 1 50 ENSP00000331106/1-305 MKSDSSTSAA PLRGLGGPLR SSEPVRAVPA RAPAVDLLEE AADLLVVHLD ENSBTAP00000052887/1-268 MKSDPATSAA PLRALGGALR SSEPVRAVPA PSAAALLLEE AADLLVVNLD ENSTTRP00000005324/1-322 MRSDPATSAV PLRGLGGPLR SSEPVRAAPA PSAAALLLEE AADLLVVHLD bmy_08975T0/1-253 ---------- -MR------- ---------- ---------- ---------- BACU007535/1-295 ---------- -MRGLGGPLR SSEPVRAAPA PSAAALLLED AADLLVVHLD 51 100 ENSP00000331106/1-305 FRAALETCER AWQSLANHAV AEEPAGT--- --------SL EVKCSLCVVG ENSBTAP00000052887/1-268 FGAALRTCER AWQGL----- AEEPAGA--- --------SL EVKCSLCVVG ENSTTRP00000005324/1-322 FRAALRTCER AWQGL----- AEEPAGA--- --------CL EVKCSLCVVG bmy_08975T0/1-253 ---------- ---------- ---------- ---------- ---------- BACU007535/1-295 FRAALRTCER AWQGL----- AEEPAGAYVV GSVRLRGRCL EVKCSLCVVG 101 150 ENSP00000331106/1-305 IQALAEMDRW QEVLSWVLQY YQVPEKLPPK VLELCILLYS KMQEPGAVLD ENSBTAP00000052887/1-268 IQALAEMDRW REVLSWVLQY YQAPEKLPPK VLELCVLLYS KMQEPGAVLD ENSTTRP00000005324/1-322 IQALAEMDRW QEVLSWVLRC YQVPEKLPPK VLELCVLLYS KMREPGAVLD bmy_08975T0/1-253 VTALAEMDRW QEVLSWVLRC YQVPEKLPPK VLELCVLLYS KMREPGAMLE BACU007535/1-295 IQALAEMDRW QEVLSWVLRC YQVPEKLPPK VLELC----- KMREPGAVLD 151 200 ENSP00000331106/1-305 VVGAWLQDPA NQNLPEYGAL AEFHVQRVLL PLGCLSEAEE LVVGSAAFGE ENSBTAP00000052887/1-268 GVRAWLQDPD NQGLPEYRSL AELHLQRVLL PLGLLSEAEE LVVGSAAFSE ENSTTRP00000005324/1-322 TVSAWLQDAD NQGLPEYRAL AELHLQRVLL PLGCLSEAEE LVAGSAVFSE bmy_08975T0/1-253 TVSAWLQDAG NQGLPEYRAL AELHLQRVLL PLGCLSEAEE LVAGSAAFSE BACU007535/1-295 TVSAWLQDAG NQGLPEYRAL AELHLRRVLL PLGCLSEAEE LVAGSAAFSE 201 250 ENSP00000331106/1-305 ERRLDVLQAI HTARQQQKQE HSGSEEAQKP NLE------- ---------- ENSBTAP00000052887/1-268 KQRLDALQAV SAARQQQTHG HSGSEETRTL NQE------- ---------- ENSTTRP00000005324/1-322 KQRLDALQAI STARQEQKHG QSGSEETQKL NQE------- ---------- bmy_08975T0/1-253 EQRLDALQAI SMARQQQKHG QSGSEETQKL NQEGETLSFF LASLQWSNGL BACU007535/1-295 EQRLDALQAI STARQQQKHG QSGSEETQKL NQE------- ---------- 251 300 ENSP00000331106/1-305 ---------- --------GS VSHKFLSLPM LVRQLWDSAV SHFFSLPFKK ENSBTAP00000052887/1-268 ---------- --------GS SSHKFLSLLT LLHQLWDSAV SHFFSLPFSK ENSTTRP00000005324/1-322 ---------- --------GF SSHRFLSLLT LLRQLWDSAV RHFFSLPFRK bmy_08975T0/1-253 SPEPWRSSLY DYARSPRPGS SSHKFLSLLT LLRQLWDSAV SHFFALPFRK BACU007535/1-295 ---------- --------GS SSHKFLSLLT LLRQLWDSAV SHFFALPFRK 301 350 ENSP00000331106/1-305 SLLAALILCL LVVRFDPASP SSLHFLYKLA QLFRWIR--- ---------- ENSBTAP00000052887/1-268 SLLAALLLCL LVLRFDPGE- ---------- ---------- ---------- ENSTTRP00000005324/1-322 SLLAALLLCL LVVRFDPASP ASLPFIYKLA QIFGSARPWL LLSAGLPSTT bmy_08975T0/1-253 SLLAALLLCL LVVRFDPASP ASLPFLYKLA QIFHRIR--- ---------- BACU007535/1-295 SLLAALLLCL LVVRFDPASP ASLPFLYKLA QIFHRIR--- ---------- 351 400 ENSP00000331106/1-305 --KAAFSRLY -QLRIRD--- --- ENSBTAP00000052887/1-268 ---------- ---------- --- ENSTTRP00000005324/1-322 EWSSCSPPWS PRLPDNRASR PRQ bmy_08975T0/1-253 --KAVTSPLC -RLPVHD--- --- BACU007535/1-295 --KAVTSPLC -RLPVHD--- ---