KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:02 2014 Check: 00 .. Name: ENSP00000264350/1-1024 Len: 1437 Check: 2486 Weight: 1.00 Name: ENSBTAP00000052996/1-959 Len: 1437 Check: 1450 Weight: 1.00 Name: BACU010625/1-1110 Len: 1437 Check: 2221 Weight: 1.00 Name: ENSTTRP00000003668/1-1018 Len: 1437 Check: 6859 Weight: 1.00 Name: bmy_19304T0/1-1390 Len: 1437 Check: 741 Weight: 1.00 // 1 50 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 ---------- ---------- ---------- ---------M TTRLRDPPLR ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- ---------- bmy_19304T0/1-1390 MRNMGKKRLS RKSQSLFTEK AAHALRSHIV VVEIEAQSEI TTRLRDPPLR 51 100 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 ALPYRSPRQE ALSVLLLPPE CPVMHDPKNW MTLVVPFAEA VHHMTGQSSQ ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- ---------- bmy_19304T0/1-1390 ALPYRSPHQE ALSVFLMLPE CPVMHDPKNW MTLVVPFAEA VHNMTGQSSQ 101 150 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 VLSKCDYLYV TL-------- ---------- ---------- ---------- ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- -----MWR-- bmy_19304T0/1-1390 VLSKCDYLYI PAENLSPIIF SDFPFVFNLL SKIKLLQANS HIKMLIWRDD 151 200 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003668/1-1018 ---------- ---------- --RP------ ---------- ---------- bmy_19304T0/1-1390 GCSQNCKLRT VLPIQMHPCR EGKPESEGKE CMDFGQIILQ GKDESPPFTL 201 250 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 ---SSHLVED ALRQLSQAEV TDFRKILVAE FIKEIHSVGE GVKSEFFHCI ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- ---------- bmy_19304T0/1-1390 RVRQSHLVED ALRQLSQAEV TDLRKILVVE FIKEIRSVGE GVKSEFFHGF 251 300 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 FEDMTKKEYG MFIYPEKGSY VRFPVNKKRY FLFGMLCGLS LYNFNVVDLP ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- ---------- bmy_19304T0/1-1390 FF-------- LLLFPPK--- ----FEKKRY FLFGMLCGLS LYNFNVVDLP 301 350 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 FPLALFKKLL DQEPSLDL-- ---------- ---------- ---------- ENSTTRP00000003668/1-1018 ---------- ---------- ---------- ---------- ---------- bmy_19304T0/1-1390 FPLALFKKLL DQEPSLEDLK ELGLLLGKNL QEVLNDEADD IKEVLGIRFS 351 400 ENSP00000264350/1-1024 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------M BACU010625/1-1110 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003668/1-1018 ---------- --------WS S--------- ---------- ---------- bmy_19304T0/1-1390 NSRYGPGYCK SHPTILMFWN AFHKLTLDEK RKFLCPESGG TAVEPGKTVM 401 450 ENSP00000264350/1-1024 ERRSRRKSRR N-GRSTAGKA AATQ------ -----PAKSP GAQLWLFPSA ENSBTAP00000052996/1-959 EGRPRRRSRG G-ARPVPGRV SESRPPPASR PSATVPAVSW GAKLWLFPSA BACU010625/1-1110 ---------- --KELSPL-- LGKK------ -----DYVSK CVDY-IFNTS ENSTTRP00000003668/1-1018 ---SRRR--- --ARLAPG-- SASR------ -----PAKLR GAKL-LFPSA bmy_19304T0/1-1390 ERRPRRKSRG GGARLASGLV PASR------ -----PAEPR AAKLWLFPSA 451 500 ENSP00000264350/1-1024 AGLHRALLRR VEVTRQLCCS PGRLAVLERG GAGVQVHQLL AGSGGARTPK ENSBTAP00000052996/1-959 AGLRSALSKR PEATRQMCCT RRRLAVLERG GAGVEVHQLP AGSDGARKPK BACU010625/1-1110 V--------- ------MAVY KE----FQRG F-----HKV- ---------- ENSTTRP00000003668/1-1018 T-LRSALSRK AEATLQMCCT RERLIVLERG GADVEVHQLP AGSDGARKPK bmy_19304T0/1-1390 APLCSALSRR TEATRQMCCT RERLAVLERG GAGVEVHQLP AGSDGARKPK 501 550 ENSP00000264350/1-1024 CIKLGKNMKI HSVDQGAEHM LILSSDGKPF EYDNYSMKHL RFESILQEKK ENSBTAP00000052996/1-959 CIKLGKKMKI HSMDQGEEHM LVLSSDGKPF EY-KYSIEHA RFQCILQEKN BACU010625/1-1110 ---FDKEILK HFQPEELITA IVGNTD---Y DW-KQFEKNS RYGPGYCKPH ENSTTRP00000003668/1-1018 CIKLGKKMKI HSMDQGAEHM LVLSSDGKPF EY-NYSIKHA RFQCILQEKN bmy_19304T0/1-1390 CIKLGKKMKI HSMDQGAEHL LVLSSDGKPF EY-NYSXEHA RFQCILQEKN 551 600 ENSP00000264350/1-1024 -IIQITCGDY HSLALSKGGE LFAWGQNLHG QLGVGRKFPS TTTPQIVEHL ENSBTAP00000052996/1-959 -IIQITCGDY HSLALSKGGE LFAWGQNLDG QLGVGRIFAS TSTPEIVENL BACU010625/1-1110 PTILMFWNAF HKLTLDEKRK F------LFG VFGEPRSRYL VLSDDVCRRF ENSTTRP00000003668/1-1018 NIIQITCGDY HSLALSKGGE LFAWGQNSDG QLGVGRGFAS VPTPQIVEHL bmy_19304T0/1-1390 TIIQITCGDY HSLALSKGGE LFAWGRNLDG QLGVGRKCAS NPTPQIVEHL 601 650 ENSP00000264350/1-1024 AGVPLAQISA GEAHSMALSM SGNIYSWGKN ECGQLGLGHT ESKDDPSLIE ENSBTAP00000052996/1-959 SGVPLVQISA GEAHSMALSM SGNVYSWGRN DCGQLGLGHT YNKESPSCIE BACU010625/1-1110 KECVQLRFS- -------VVI SAEIRSGVRS -------SDS TGKDSPSLVE ENSTTRP00000003668/1-1018 SGVPLVQISA GEAHSMALSM SGNIYSWGRN DCGQLGLGHT DNKDSPCLIE bmy_19304T0/1-1390 SGVPLVQISA GEAHSMALSM SGNVYSWGRN DCGQLGLGHT DNKDSPSLIE 651 700 ENSP00000264350/1-1024 GLDNQKVEFV ACGGSHSALL TQDGLLFTFG AGKHGQLGHN STQNELRPCL ENSBTAP00000052996/1-959 ALDDQKVEFL ACGGCHTALL TKSGLVFTFG DGKYGQLGHN STQNELRPRL BACU010625/1-1110 VLDNQTVEFL ACGGSHTALL TKDGLVFTFG AGKYGQLGHN STQNELRPCL ENSTTRP00000003668/1-1018 MPDNQKVEFL ACGGSHTALL TKGGLVFTFG AGKYGQLGHN STQNELRPCL bmy_19304T0/1-1390 VLDNQKVEFL ACGGSHTALL TKDGLVFTFG AGKYGQLGHN STQNELRPCL 701 750 ENSP00000264350/1-1024 VAELVGYRVT QIACGRWHTL AYVSDLGKVF SFGSGKDGQL GNGGTRDQLM ENSBTAP00000052996/1-959 VTGLVGNRVT QIACGRQHTL AYVSDTGKVF SFGSGKEGQL GNGGTRNQLI BACU010625/1-1110 VTGLAGNRVT QIACGRQHTL AYVSDLGKVF SFGSGKEGQL GNGGTHNQLI ENSTTRP00000003668/1-1018 VTGFVGNRVT QIACGRQHTL AYVSDLGKVF SFGSGKEGQL GNGGTHNQLI bmy_19304T0/1-1390 VTGLVGNRVT QIACGRQHTL AYVSDLGKVF SFGSGKEGQL GNGGTHNQLI 751 800 ENSP00000264350/1-1024 PLPVKVSSSE ELKLESHTSE KELIMIAGGN QSILLWIKKE NSYVNLKRTI ENSBTAP00000052996/1-959 PRPMKLLSSE ELKSESSTSV KELIMVAGGN QSILIWMEKE NSYVNLRRKI BACU010625/1-1110 PHPMKSPSNE ELTFG----- -KFFRSTGFD MNTLVERLIV NSYVNLRRKI ENSTTRP00000003668/1-1018 PCPMKLSSKE ELTFESHTSE KELIMIAGGD QSILLWVEKE NSYVNLRRRI bmy_19304T0/1-1390 PRPMKLPSNE ELTFESRTSE KELIMIAGGD QSILLWVEKE NSYVNLRRKI 801 850 ENSP00000264350/1-1024 PTLNEGTVKR WIADVETKRW QSTKREIQEI FSSPACLTGS FLRKRRTTEM ENSBTAP00000052996/1-959 PTLNEGTVKR WIADVGTKRW QNTKREIREI FSSPACLTGS FLRERIDGKM BACU010625/1-1110 PTLNKGTVKR WIADVGTKQW QNTKRS---- ---------- ------AGEM ENSTTRP00000003668/1-1018 PTLNEGTVKR WIADVGTKQW QNTKREIREI FSSPACLAGS FLRERIAAET bmy_19304T0/1-1390 PTLNEGTVKR WIADVGTKQW QNTKRR---- ---------- ------AGET 851 900 ENSP00000264350/1-1024 MPVYLDLNKA RNIFKELTQK DWITN-MITT CLKDNLLKRL PFHSPPQEAL ENSBTAP00000052996/1-959 ISIHLDLNTA RNTFKELTQK DWITN-TITS CLKDNLLKNL PFNSPHQEAL BACU010625/1-1110 TSIHLDLNTA RETFKELTQK DWITNMVITT CLRDTLFKNL PFHSPHQEAL ENSTTRP00000003668/1-1018 MSLHLDLNAA RDTFMELTQK DWITN-TITT CLRDTLLKNL PFHSPHQEAL bmy_19304T0/1-1390 MSVHLDLNTA RDTFKELTQK DWITNMVITT CLRDTLFKNL PFHSPHQEAL 901 950 ENSP00000264350/1-1024 EIFFLLPECP MMHISNNWES LVVPFAKVVC KMSDQSSLVL EEYWATLQES ENSBTAP00000052996/1-959 EVFFLLPECP VMHDSNNWES LVVPFAEAVC KMNDQMSGVL EEYWASLKES BACU010625/1-1110 EVFFLLPECS VMHDPNNWES LVVPFAEAVY KMHAQSSEVL EEYWASLQES ENSTTRP00000003668/1-1018 GVFFLLPECP VMHDCNNWES LVVPFAEALY KMRGQSSEVL EEYWASLQEA bmy_19304T0/1-1390 EVFFLLPECP VMHDSDNWER LVVPFAEAVY KMRAQSSEVL EEYWASLQES 951 1000 ENSP00000264350/1-1024 TFSKLVQMFK TAVICQLDYW DESAEENGNV QALLEMLKKL HRVNQVKCQL ENSBTAP00000052996/1-959 IFINLVQMFK RAVIAQLHYW TESSENNSHI KALLEVLKKL YR-------- BACU010625/1-1110 AFIGLVQMFK AAVIAQLNYW AGTAENNYHI KTLLEMLKKL HRVNQTAYQL ENSTTRP00000003668/1-1018 AFIRLVQMFK TAVIAQLNYW AGTTENNYHI KTLLEMLKKL HRVNQTKCQL bmy_19304T0/1-1390 AFIRLVQMFK TAVIAQLNYW AGTAENNYHI KTLLEMLKKL HRVNQTKYQL 1001 1050 ENSP00000264350/1-1024 PESIFQVDEL LHRLNFFVEV CRRYLWKMTV DASENVQCCV IFSHFPFIFN ENSBTAP00000052996/1-959 ---------- ---------- ---------- ---------- ---------- BACU010625/1-1110 PENIFEVNEL THWLDFYEDA SKRTASIMNA DTSMDIRYPV IFSHFPFIFN ENSTTRP00000003668/1-1018 PENIFKVNEL THLLDFYGDA YRRTIWKMGA DTSVDIHYPV IFSHFPFIFN bmy_19304T0/1-1390 PENIFKVNEL THWLDFYEDA SKRTTSKMNA DTSMDIRCPV IFSHFPFIFN 1051 1100 ENSP00000264350/1-1024 NLSKIKLLHT DTLLKIESKK HKAYLRSAAI EEERESEFAL RPTFDLTVRR ENSBTAP00000052996/1-959 ---------- -------EKK FRACMRLAGI VDQERSALSS LPTFNLIVRR BACU010625/1-1110 ILSKIKLLYA DSLLKIQEKR LRAFMRLVGV VEQEGSEFAL LPTFNLTVRR ENSTTRP00000003668/1-1018 ILSKVKLLYA DSLLKIQEKR WRACVSLAGI VEQERSEFAL LPTVNLTVRR bmy_19304T0/1-1390 ILSKIKLLYA DSSLKMQEKR WRACMRLVGI VEQEESEFAL LPTFNLTVRR 1101 1150 ENSP00000264350/1-1024 NHLIEDVLNQ LSQFENEDLR KELWVSFSGE IGYDLGGVKK EFFYCLFAEM ENSBTAP00000052996/1-959 SHLIEDVFSQ LNQFENEDLR RELMVSFSGE IGYNFGGVRA EFFYCLFQEM BACU010625/1-1110 GHLIEDVLNQ LNQFENEDLR RELLVSFSGE IGYDFGGVRA EFFHCLFEEM ENSTTRP00000003668/1-1018 SHLIEDVLNQ LNQFENEDLR RELWVSFSGE IGYDAGGVRA EFFRCLFEEM bmy_19304T0/1-1390 GHLIEDVLNQ LNQFENEDLR RELLVSFSGE IGFDFGGVRA EFFHCLFEEM 1151 1200 ENSP00000264350/1-1024 IQPEYGMFMY PEGASCMWFP VKPKFEKKRY FFFGVLCGLS LFNCNVANLP ENSBTAP00000052996/1-959 TRPEYGMFTY PEEASYMWFP VRPKFEKKSY FFFGLLCGLS LFNCNVADIP BACU010625/1-1110 TRPEYGMFTY PEEASYMWFP VKPKFEKKNY FFFGVLCGLC LFSCNVANIP ENSTTRP00000003668/1-1018 TRPEYGMFTY PEEASYMWFP VKPKFEKKSY FFFGVLCGLC LFSRNVANIP bmy_19304T0/1-1390 TRPEYGMFTY PEEASYMWFP VKPKFEKKNY FFFGVLCGLC LFSCNVANIP 1201 1250 ENSP00000264350/1-1024 FPLALFKKLL DQMPSLEDLK ELSPDLGKNL QTLLDDEGDN FEEVFYIHFN ENSBTAP00000052996/1-959 FPLALFKKLL DQTPSLEDLK ELSPVLGESL QTLLDDDGDD LEEVFHIHFN BACU010625/1-1110 FPLALFKKLL DQAPSLEDLK ELSPVLGKSL QTLLDDEGDD FREVFHIHFN ENSTTRP00000003668/1-1018 FPLALFKKLL DQVPSLEDLK ELSPVLGXXX XXXXXXXXXX XXXXXXXXXX bmy_19304T0/1-1390 FPLALFKKLL DQVPSLEDLK ELSPVLGKSL QTLLDDEGDD FGEVFHIHFN 1251 1300 ENSP00000264350/1-1024 VHWDRNDTNL IPNGSSITVN QTNKRDYVSK YINYIFNDSV KAVYEEFRRG ENSBTAP00000052996/1-959 VHWDKNDVDL IPDGSHVIVD QTNKRDYVSK YVNYIFNISV KAVYEEFQRG BACU010625/1-1110 VHWDKNDVDL IPNGSHIAVD QTNKRDYVSK YVDYIFNISV KAFYEEFQRG ENSTTRP00000003668/1-1018 VHWDKHDVDL IPNGSHITVD HANKRDYVSK YVSYIFNISV KAVYEEFQRG bmy_19304T0/1-1390 VHWDKNDVDL VPNGSHIAVD QTNKRDYISK YVDYIFNISV KAVYEEFQRG 1301 1350 ENSP00000264350/1-1024 FYKMCDEDII KLFHPEELKD VIVGNTDYDW KTFEKNARYE PGYNSSHPTI ENSBTAP00000052996/1-959 FYKVCDKEII EFFHPEQLKD VIIGNTDYDW ETFEKNAHYE HGYDSSHPTI BACU010625/1-1110 FYKLCDKEII EFFHPEELRD VIIGNTDYDW ETFEKNACYE QGYDSSHPTI ENSTTRP00000003668/1-1018 FYKVCDKEII EFFHPEELKD VIIGNTDYDW ETFEKNARYE QGYDSSHPTI bmy_19304T0/1-1390 FYKLCDKEII EFFHPEELRD VIIGNTDYDW ETLEKNARYE QGYDSSHPTI 1351 1400 ENSP00000264350/1-1024 VMFWKAFHKL TLEEKKKFLV FLTGTDRLQM KDLNNMKITF CCPESWNERD ENSBTAP00000052996/1-959 VMFWKALHKL TLEEKKKFLV FLTGTDRIQV KGLKNMKITF HCPENLNEKD BACU010625/1-1110 VMFWKALHKL TLEEKKKFLA FLTGTDRIQV KGLKNMKITF CCPEYLNEKD ENSTTRP00000003668/1-1018 VMFWKALHKL TSEEKKKFLA FLTGTDRIQL IGLKNMKITF RCPEDLNEKD bmy_19304T0/1-1390 VMFWKALHKL TLEEKKKFLA FLTGTDRIQV KGLKNMKITF CCPEYLNEKD 1401 1450 ENSP00000264350/1-1024 PIRALTCFSV LFLPKYSTME TVEEALQEAI NNNRGFG ENSBTAP00000052996/1-959 PIRAQTCFSV LYLPKYSTME RVEEALQAAI NNKRGFG BACU010625/1-1110 PMRAQTCFSV LYLPKYSTME RVEEALQVAI NSSRGFG ENSTTRP00000003668/1-1018 PIRAQTCFSV LYLPKYS-ME RVEEALQVAI NSNR-FG bmy_19304T0/1-1390 PIRAQTCYSV LYLPKYSTME RVEEALQVAI NSNRGFG