KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:04 2014 Check: 00 .. Name: ENSP00000268281/1-855 Len: 1150 Check: 611 Weight: 1.00 Name: ENSBTAP00000053077/1-855 Len: 1150 Check: 3142 Weight: 1.00 Name: ENSTTRP00000014744/1-855 Len: 1150 Check: 2628 Weight: 1.00 Name: bmy_00723T0/1-1103 Len: 1150 Check: 9771 Weight: 1.00 Name: BACU011956/1-1023 Len: 1150 Check: 1458 Weight: 1.00 // 1 50 ENSP00000268281/1-855 MARHLLLPLV MLVISPIPGA FQDSALSPTQ EEPEDLDCGR PEPSARIVGG ENSBTAP00000053077/1-855 MSQHLLLPLV ILAISPIPEA FQDSALSPTQ EEPEDLDCGR PKPSARIVGG ENSTTRP00000014744/1-855 MSQHLLLPLA VLAISPIPGA FQDSALSPTK EEPEDLDCGR PEPSARIMGG bmy_00723T0/1-1103 ---------- ---------- ---------- ---------- -------MGG BACU011956/1-1023 ---------- ---------- ---------- ---------- -------MGG 51 100 ENSP00000268281/1-855 SNAQPGTWPW QVSLHHGGGH ICGGSLIAPS WVLSAAHCFM TNGTLEPAAE ENSBTAP00000053077/1-855 SDSQPGTWPW QVSLHHGGGH ICGGSLIAPS WVLSAAHCFV TNGTLEPAAE ENSTTRP00000014744/1-855 SDSQPGTWPW QVSLHQGGGH ICGGSLIAPS WVLSAAHCFV TNGTLEPAAE bmy_00723T0/1-1103 SDAQPGTWPW QVSLHQGGGH ICGGSLIAPS WVLSAAHCFV TNGTLEPAAE BACU011956/1-1023 SDAQPGTWPW QVSLHQGGGH ICGGSLIAPS WVLSAAHCFV TNGTLEPAAE 101 150 ENSP00000268281/1-855 WSVLLGVHSQ DGPLDGAHTR AVAAIVVPAN YSQVELGADL ALLRLASPAS ENSBTAP00000053077/1-855 WSVVLGVHSQ DGPLDGAHVR AVAAILVPDN YSSVERGADV ALLRLASPAR ENSTTRP00000014744/1-855 WSVVLGVHSY DGPLDGAHVR SVAAILVPDN YSGVESGADV ALLRLASPAR bmy_00723T0/1-1103 WSVVLGVHSQ DGPLDGAHVR AVAAILVPDN YSGVERGADV ALLRLASPAR BACU011956/1-1023 WSVVLGVHSQ DGPLEGAHVR AVAAILVPDN YSGVERGADV ALLRLASPAR 151 200 ENSP00000268281/1-855 LGPAVWPVCL PRASHRFVHG TACWATGWGD VQEADPLPLP WVLQEVELRL ENSBTAP00000053077/1-855 LGPSVRPVCL PRASHRFAQG TACWATGWGD VQEEDPLPLP WVLQEVELRL ENSTTRP00000014744/1-855 LGPTVRPVCL PRASHRFAHG TACWATGWGD VQEADPLPLP WVLQEVELRV bmy_00723T0/1-1103 LGPAVRPVCL PRASHRFAHG TACWATGWGD VQEADPLPLP WVLQEVELRL BACU011956/1-1023 LGPAVRPVCL PRASHRFAHG TACWATGWGD VQEADPLPLP WVLQEVELRL 201 250 ENSP00000268281/1-855 LGEATCQCLY SQPGPFNLTL QILPGMLCAG YPEGRRDTCQ GDSGGPLVCE ENSBTAP00000053077/1-855 LGEAACQCLY SRPGPFNLTF QLLPGMLCAG YREGRRDTCQ GDSGGPLVCK ENSTTRP00000014744/1-855 LGEAACQCLY SRPGPFNLTF QLLPGMLCAG YPEGRKDTCQ GDSGGPLVCK bmy_00723T0/1-1103 LGEAACQCLY SRPGPFNLTF QLLPGMLCAG YPEGRRDTCQ GDSGGPLVCE BACU011956/1-1023 LGEAACQCLY SRPGPFNLTF QLLPGMLCAG YPEGRRDTCQ GDSGGPLVCE 251 300 ENSP00000268281/1-855 EGGRWFQAGI TSFGFGCGRR NRPGVFTAVA TYEAWIREQV MGSEPGPAFP ENSBTAP00000053077/1-855 EGGRWFQAGI TSFGFGCGRR NRPGVFTAVA PYEAWIREQV SGSEPGPAFP ENSTTRP00000014744/1-855 EGGRWFQAGI TSFGFGCGRR NRPGVFTAVA PYEAWIREQV LGSEPGPAFP bmy_00723T0/1-1103 EGGRWFQAGI TSFGFGCGRR NRPGVFTAVA PYEAWIREQV LGSEPGPAFP BACU011956/1-1023 EGGRWFQAGI TSFGFGCGRR NRPGVFTAVA PYEAWIREQV LGSEPGPAFP 301 350 ENSP00000268281/1-855 TQPQKTQSDP QEPREENCTI ALPECGKAPR PGAWPWEAQV MVPGSRPCHG ENSBTAP00000053077/1-855 TQSPEAQSGL PEPMNENCTI ALPECGRAPR PGAWPWEAQV MVPGSRPCYG ENSTTRP00000014744/1-855 TQSPELQSGL PEPTDENCTI ALPECGKAPR PGAWPWEAQV MVPGSRPCYG bmy_00723T0/1-1103 TQSPEPQSGL PEPTDENCTI ALPECGKASR PGAWPWEAQV MVPGSRPCYG BACU011956/1-1023 TQSPEPQSGL PEPTDENCTI ALP------- ---------- ---------- 351 400 ENSP00000268281/1-855 ALVSESWVLA PASCFLDPNS SDSPPRDLDA WRVLLPSRPR AERVARLVQH ENSBTAP00000053077/1-855 ALVSESWVLA PASCFPGHIS SARPPSDLDY WRVQLPSRPR AEQVARLVPH ENSTTRP00000014744/1-855 ALVSESWVLA PASCFPGRIS SDLPPRDLDH WRVMLPSRPR AERVARLVPH bmy_00723T0/1-1103 ALVSESWVLA PASCFPGRIS SDLPPRDLDN WRVMLPSRPR AERVARLVPH BACU011956/1-1023 --------VS PSRS---RIS SDLPPRDLDN WRVMLPSRPR AERVARLVPH 401 450 ENSP00000268281/1-855 ENASWDNASD LALLQLRTPV NLSAASRPVC LPHPEHYFLP GSRCRLARWG ENSBTAP00000053077/1-855 ENASWDDASN LALLQLRAPV NLSAAPRPVC LPHPEHYFLP GSRCRLARWG ENSTTRP00000014744/1-855 ENASWDDASN LALLQLRAPV NLSVAPRPVC LPHPEHYFLP GSRCRLARWG bmy_00723T0/1-1103 DNASWDDASN LALLQLRAPV NLSAAPQPVC LPHPEHYFLP GSRCRLARWG BACU011956/1-1023 DNASWDDASN LALLQLRAPV NLSAAPQPVC LPHPEHYFLP GSRCRLARWG 451 500 ENSP00000268281/1-855 RGEPALGPGA LLEAELLGGW WCHCLYGRQG AAVP-----L PGDPPHALCP ENSBTAP00000053077/1-855 RGEPAPGASS LLEAELLSAW WCHCLYGRQG ASVP-----P PGEPPQALCP ENSTTRP00000014744/1-855 HTEPVPGAGS LLEAELLGAW WCHCLYGRQG ESVP-----P PGEPPLALCP bmy_00723T0/1-1103 HTEPAPGAGS LLEAELLGVW WCHCLYGRQG ASVPPPGVXP PGEPPQVLCP BACU011956/1-1023 HTEPAPGAGS LLEAELLGVW WCHCLYGRQG ASVP-----P PGEPPQALCP 501 550 ENSP00000268281/1-855 AYQEKEEVGS CWNDSRWSLL CQEEGTWFLA GIRDFPSGCL RPRAFFPLQT ENSBTAP00000053077/1-855 AYQEEEAEGS CWNYSHWSLL CREEGTWFLA GIRDLPSDCL RPRVFYPLQT ENSTTRP00000014744/1-855 AYQEEEVAGR CWNYSHWSLL CREEGTWFLA GIRDLPSDCL RPRAFYPLQT bmy_00723T0/1-1103 AYQEEEVAGR CWNYSHWSLL CREEGTWFLA GIGDLPSDCL RPRAFYPLQT BACU011956/1-1023 AYQEEEVAGR CW-------- ---------- ---------- ---------T 551 600 ENSP00000268281/1-855 HGPWISHVTR GAYLEDQLAW DWGPDGEETE TQTCPPHTEH GACGLRLEAA ENSBTAP00000053077/1-855 HGPWISHVTR GAYLEDQLAW DWGPEGEETE AQTCPPHTEN GACGLQPEPA ENSTTRP00000014744/1-855 HGPWISHVTR GAYLEDQLSW DWGPEGEETE TQTCPPHTEH GACGLRPEPA bmy_00723T0/1-1103 HGPWISHVTR GAYLEDQLAW DWGPEGEETE TQTCPPHTEH GACGLRPEPA BACU011956/1-1023 HGPWISHVTR GAYLEDQLAW DWGPEGEETE TQTCPPHTEH GACGLRPEPA 601 650 ENSP00000268281/1-855 PVGVLWPWLA EVHVAGDRVC TGILLAPGWV LAATHCVLRP GSTTVPYIEV ENSBTAP00000053077/1-855 PMGVLWPWLA EVHVAGERVC AGVLVAPGWV LAATHCVLRP GSTTVPYIEV ENSTTRP00000014744/1-855 LTGGLWPWLA EVHVAGERVC TGILVAPGWV LAATHCILRL GSTTVPYIEV bmy_00723T0/1-1103 LMGVLWPWLA EVHVAGERVC TGILVAPGWV LAATHCILRL GSTTVPYIEV BACU011956/1-1023 LMGVLWPWLA EVHVAGERVC TGILVAPGWV LAATHCILRL GSTTVPYIEV 651 700 ENSP00000268281/1-855 YLGRAGASSL PQGHQVSRLV ISIRLPQHLG LRPPLALLEL SSRVEPSPSA ENSBTAP00000053077/1-855 YLGRAGASPL PQSHQVSRLV ISIHLPRHLG LRPPLALLEL SSRVEPSPSA ENSTTRP00000014744/1-855 YLGRAGASPL PQSHQVSRLV ISIRLPRHLG LRPPLALLEL SSRVEPSPSA bmy_00723T0/1-1103 YLGRAGASPL PQSHQVSRLV ISIRLPRHLG LRPPLALLEL SSRVEPSPSA BACU011956/1-1023 YLGRAGASPL PQSHQVSRLV ISIRLPRHLG LRPPLALLEL SSRVEPSPSA 701 750 ENSP00000268281/1-855 LPICLHPAGI PPGASCWVLG WKEPQDRVPV AAAVSILTQR ICDCLYQGIL ENSBTAP00000053077/1-855 LPICLHPGGT PLGASCWVLG WKDPQDRVPV AAAVSILTPR LCHCLYQGLL ENSTTRP00000014744/1-855 LPICLHPGGT PLGASCWVLG WKDPQDRVPV AAAVSILTPR LCHCLYQGIL bmy_00723T0/1-1103 LPICLHPGGT PLGASCWVLG WKDPQDRVPV AAAVSILTPR LCHCLYQGIL BACU011956/1-1023 LPICLHPGGT LLGASCWVLG WKDPQDRVPV AAAVSILTPR LCHCLYQGIL 751 800 ENSP00000268281/1-855 PPGTLCVLYA EGQENRCEMT SAPPLLCQMT EGSWILVGMA VQGSRELFAA ENSBTAP00000053077/1-855 PPGTLCVLYA EGQEDRCEVT SAPPLLCQTE GGSWVLVGMA VRGSRELFAA ENSTTRP00000014744/1-855 PPGTLCVLYA EGQEDRCEVT SAPPLLCQTE EGSWVLVGMA IRGSRDLFAA bmy_00723T0/1-1103 PPGTLCVLYA EGQEDRCEVT SAPPLLCQTE GGSWVLVGMA IRGSRELFAA BACU011956/1-1023 PPGTLCVLYA EGQEDRCEVT SAPPLLCQTE GGSWVLMGMA IRGSRELFAA 801 850 ENSP00000268281/1-855 IGPEEAWISQ TVGEANFLPP SGSPHWPTGG SNLCPPELAK AS-------- ENSBTAP00000053077/1-855 TGPEEAWISQ TVGEAPFLPP SGFPHWLPEG SDLCPPDMAR AS-------- ENSTTRP00000014744/1-855 IGPEETWISQ TVGEAHFLPP SGFPHWLPEG GDLCPPDMAR AS-------- bmy_00723T0/1-1103 IGPEETWISQ TVGEVYFLPP SGFPHWLPEG GDLCPPDMAR ASASCGVVPQ BACU011956/1-1023 IGPEETWISQ TVGEAYFLPP SGFPHWLPEG GDLCPPDMSR ASASCGVVPQ 851 900 ENSP00000268281/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053077/1-855 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014744/1-855 ---------- ---------- ---------- ---------- ---------- bmy_00723T0/1-1103 ARITGGSDSA HGQWPWQVSI SYNGIHACGG SLLSEQWVLS AAHCFPREHH BACU011956/1-1023 ARITGGSDSA HGQWPWQVSI SYNGVHACGG SLLSEQWVLS AAHCFPREHH 901 950 ENSP00000268281/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053077/1-855 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014744/1-855 ---------- ---------- ---------- ---------- ---------- bmy_00723T0/1-1103 TEDYEVKLGA HKLNYYSSDT EVRTVAQVIS HSSYLQEGSM GDIALLQLSR BACU011956/1-1023 TEDYEVKLGA HRLNHYSSDT QVRTVAQVIS HPSYLQEGSM GDIALLQLSR 951 1000 ENSP00000268281/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053077/1-855 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014744/1-855 ---------- ---------- ---------- ---------- ---------- bmy_00723T0/1-1103 SVNFSRYIRP ICLPAANASF PNGLQCTVTG WGHVAPSVSL QAPKTLQQLE BACU011956/1-1023 SVNFSRYIRP ICLPAANASF PNGLQCTVTG WGHVAPSVSL QAPKTLQQLE 1001 1050 ENSP00000268281/1-855 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053077/1-855 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014744/1-855 ---------- ---------- ---------- ---------- ---------- bmy_00723T0/1-1103 VPLISRETCN CLYSINAKPE EPHFIQQDMV CAGYVNGGKD ACQGDSGGPL BACU011956/1-1023 VPLISRETCN CLYNINAKPE EPHFIQQDMV CAGYVNGGKD ACQGDSGGPL 1051 1100 ENSP00000268281/1-855 ---------- ---------- GSP-HAVYF- ---------- ---------- ENSBTAP00000053077/1-855 ---------- ---------- GSP-RAALF- ---------- ---------- ENSTTRP00000014744/1-855 ---------- ---------- GSP-RAALF- ---------- ---------- bmy_00723T0/1-1103 SCPVGGRWYV AGIVSWGDAC GAPNRPGVYT LTSSYASWIH HKVAELQPQV BACU011956/1-1023 SCPVGGRWYV AGIVSWGDAC GAPNRPGVYT LTSSYASWIH HKVAELQPQV 1101 1150 ENSP00000268281/1-855 ---------- ---------- ---------- -LLLLTL-LI QS-------- ENSBTAP00000053077/1-855 ---------- ---------- ---------- -LLLLTP-LI QG-------- ENSTTRP00000014744/1-855 ---------- ---------- ---------- -LLLLTL-LI QG-------- bmy_00723T0/1-1103 VPQIQESQPD GNLCSNFGAF NSAPAPGLVG PLLLLPLGLT LGLLRPQHDH BACU011956/1-1023 VPQIQESQPD GNLCSNYGAF NSAPAPGLVG PLLLLPLGLT LGLLCPQHDH