KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:05 2014 Check: 00 .. Name: ENSTTRP00000011264/1-441 Len: 707 Check: 9029 Weight: 1.00 Name: bmy_01629T0/1-662 Len: 707 Check: 5985 Weight: 1.00 Name: ENSBTAP00000053098/1-461 Len: 707 Check: 8904 Weight: 1.00 Name: ENSP00000335481/1-443 Len: 707 Check: 961 Weight: 1.00 Name: BACU003353/1-484 Len: 707 Check: 4408 Weight: 1.00 // 1 50 ENSTTRP00000011264/1-441 MGGPRAWALL CFGLLLPGGS AAWSVGGAPF SARRNWCSYV VTRTISCHVQ bmy_01629T0/1-662 MGGPRAWALL CFGLLLPGGS AAWSVGGAPF SARRNWCSYV VTRTISCHVQ ENSBTAP00000053098/1-461 MGGPRAWALL CLGLLLPGGS AAWSVGGAPF SARRNWCSYV VTRTVSCHVQ ENSP00000335481/1-443 MGGPRAWALL CLGLLLPGGG AAWSIGAAPF SGRRNWCSYV VTRTISCHVQ BACU003353/1-484 MGGPRAWALL CFGLLLPGGS AAWSVGGAPF SARRNWCSYV VTRTISCHVQ 51 100 ENSTTRP00000011264/1-441 NGTYLQRVLQ NCPWPMSCPG NSYRTVVRPA YKVMYKTVTA REWRCCPGRS bmy_01629T0/1-662 NGTYLQRVLQ NCPWPMSCPG NSYRTVVRPT YKVMYKTVTA REWRCCPGRS ENSBTAP00000053098/1-461 NGTYLQRVLQ NCPWPMSCPG NSYRTVVRPT YKVMYKMVTA REWRCCPGHS ENSP00000335481/1-443 NGTYLQRVLQ NCPWPMSCPG SSYRTVVRPT YKVMYKIVTA REWRCCPGHS BACU003353/1-484 NGTYLQRVLQ NCPWPMSCPG NSYRTVVRPT YKVMYKTVTA REWRCCPGRS 101 150 ENSTTRP00000011264/1-441 GSSCEEVVGS SGFVEPR--- ---------- ---------- -----WSGNT bmy_01629T0/1-662 GSSCEEVVGS SGFVEPG--- ---------- ---------- -----WSGNA ENSBTAP00000053098/1-461 GPSCEEVTGS PGFVEPG--- ---------- ---------- -----WSGSA ENSP00000335481/1-443 GVSCEEVAAS SASLEPM--- ---------- ---------- -----WSGST BACU003353/1-484 GSSCEEVVGS SGFVEPGWSG NAMWRMALRP TALSVVGSSG FVEPGWSGNA 151 200 ENSTTRP00000011264/1-441 MWRMALRPTA LSGCLNCSKV SELTERLKVL EAKVAVLTVT EQAVPPTPAA bmy_01629T0/1-662 MWRMALRPTA LSGCLNCSKV SELTERLKVL EAKVAVLTVT EQAVPPTPAA ENSBTAP00000053098/1-461 TRRMALRPTG FSGCLNCSKV SELTERLKVL EAKVAVLTVT ERAVPPTPGA ENSP00000335481/1-443 MRRMALRPTA FSGCLNCSKV SELTERLKVL EAKMTMLTVI EQPVPPTPAT BACU003353/1-484 MWRMALRPTA LSGCLNCSKV SELTERLKVL EAKVAVLTVT EQAVPPTPAA 201 250 ENSTTRP00000011264/1-441 PEDPAPLWGS PAAQGSPGDG GLQ------- ---------- DRV--GARGL bmy_01629T0/1-662 PEDPAPLWGS PAAQGSPGDG GLQGLPGTRE NVRASLLPRD GRCWRGGQGW ENSBTAP00000053098/1-461 PEDPAPLWGS PAVQGSPGDG GLRGLPGTRE NQRPPLLPRD DRV--GARGL ENSP00000335481/1-443 PEDPAPLWGP PPAQGSPGDG GLQ------- ---------- DQV--GAWGL BACU003353/1-484 PEDPAPLWGS PAAQGSPGDG GLQGLPGTRE NVRAPLLPRD DRV--GARGL 251 300 ENSTTRP00000011264/1-441 PGPSGPKGDP GSRG------ --PMGMRGLP GPQGPPGIPG QAGAVGTPGE bmy_01629T0/1-662 GQAKRKTGAA ELMNFLPQIE LVPGGFLGPL APRETLAAGA QWGCEARQVR ENSBTAP00000053098/1-461 PGPAGPKGDP GSRG------ --PMGMRGPP GLQGPPGSPG QAGAVGIPGE ENSP00000335481/1-443 PGPTGPKGDA GSRG------ --PMGMRGPP GPQGPPGSPG RAGAVGTPGE BACU003353/1-484 PGPSGPKGDP GSRG------ --PMGMRGPP GPQGPPGSPG QAGAVGTPGE 301 350 ENSTTRP00000011264/1-441 RG-------- ----PPGPPG PPGPPAPLGP -PYARISQHX XXXXXXXXXX bmy_01629T0/1-662 RAPQGALARL ELWAPLERGD LQAPQGLLAP QPHLDHPTPG SPSMGTHFCP ENSBTAP00000053098/1-461 RGPPG----- ----PPGPPG PPGPPAPVGP -PYARISQHG DPILSNTFTE ENSP00000335481/1-443 RGPPG----- ----PPGPPG PPGPPAPVGP -PHARISQHG DPLLSNTFTE BACU003353/1-484 RG-------- ----PPGPPG PPGPPAPLGP -HYTRISQHG DPFLSNTFTE 351 400 ENSTTRP00000011264/1-441 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01629T0/1-662 TPSLRP---- AATGPRDRLG PQAPQDP--- ------WGPP GPTGPKGISG ENSBTAP00000053098/1-461 TSSHWPQGPA GPPGPPGPMG PPGLPGPMGI PGSPGHMGPP GPIGPKGISG ENSP00000335481/1-443 TNNHWPQGPT GPPGPPGPMG PPGPPGPTGV PGSPGHIGPP GPTGPKGISG BACU003353/1-484 TSSHWPQGPA GPPGPPGPMG PPGPPGPMGI PGNPGHIGPP GPTGPKGISG 401 450 ENSTTRP00000011264/1-441 XXXXXXXXXX XXXXXXXXXX XXXGEPGPKG DPGEKSHWAP SLQSFLQQQA bmy_01629T0/1-662 HPGEKGERGL RGEPGPQGFV GQQGEPGPKG DPGEKSHWGE GLH---QLRE ENSBTAP00000053098/1-461 HPGEKGERGM RGEPGPQGSM GQRGEPGPKG DPGEKSHWAP SLQSFLQQQA ENSP00000335481/1-443 HPGEKGERGL RGEPGPQGSA GQRGEPGPKG DPGEKSHWGE GLH---QLRE BACU003353/1-484 HPGEKGERGL RGEPGPQGSM GRQGEPGPKG DPGEKSHWGE GLH---QLRE 451 500 ENSTTRP00000011264/1-441 QLELLARRVT LLEAII---- ---------- ---------- ---------- bmy_01629T0/1-662 ALKILAERVL ILETMIGLYE TDRRTDSPAP ACQASPGPPG WSCLGPVKRL ENSBTAP00000053098/1-461 QLELLARRVT LLEAII---- ---------- ---------- ---------- ENSP00000335481/1-443 ALKILAERVL ILETMIGLYE ---------- ---------- ---------- BACU003353/1-484 ALKILAERVL ILETMIGLYE ---------- ---------- ---------- 501 550 ENSTTRP00000011264/1-441 ---------- ---------- ---------- ---------- ---------- bmy_01629T0/1-662 DKVKGVALET QAPTPVVRPG APDIVGNVVS RPAGEPEVTD FESERNYGQW ENSBTAP00000053098/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000335481/1-443 ---------- ---------- ---------- ---------- ---------- BACU003353/1-484 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000011264/1-441 ---------- ---------- ---------- ---------- ---------- bmy_01629T0/1-662 SQTPELQGIV GNRARLQQCR GLWVITSEPR PPGGLWKEQP RSQQRLTPRL ENSBTAP00000053098/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000335481/1-443 ---------- ---------- ---------- ---------- ---------- BACU003353/1-484 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000011264/1-441 ---------- ---------- ---------- ---------- ---------- bmy_01629T0/1-662 LPGSQRELAP PPTLGAQPSP RRPDTHRLLF SISHQAPSLQ SFLQQQAQLE ENSBTAP00000053098/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000335481/1-443 ---------- ---------- ---------- ---------- ---------- BACU003353/1-484 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000011264/1-441 ---------- ---WPEPE-G SGADPAGTGT PSLLRGKRGG HATSYRIVAP bmy_01629T0/1-662 LLARRVTLLE AIIWPEPE-G SGADPAGTGT PSLLRGKRGG HATSYRIVAH ENSBTAP00000053098/1-461 ---------- ---WPEPE-G SGASLASTGT PSLLRGKRGG HAASYRIVAP ENSP00000335481/1-443 ---------- ------PELG SGAGPAGTGT PSLLRGKRGG HATNYRIVAP BACU003353/1-484 ---------- ------PE-G SGADPAGTGT PSLLRGKRGG HATSYRIVAP 701 750 ENSTTRP00000011264/1-441 RSRNERD bmy_01629T0/1-662 RSRNERD ENSBTAP00000053098/1-461 RSRDERD ENSP00000335481/1-443 RSRDERG BACU003353/1-484 RSRNERD