KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:02:05 2014 Check: 00 .. Name: bmy_12372T0/1-1480 Len: 1480 Check: 2521 Weight: 1.00 Name: ENSP00000354293/1-776 Len: 1480 Check: 5006 Weight: 1.00 Name: ENSTTRP00000004662/1-648 Len: 1480 Check: 1826 Weight: 1.00 Name: ENSBTAP00000053109/1-776 Len: 1480 Check: 444 Weight: 1.00 // 1 50 bmy_12372T0/1-1480 MEAGERKKCF LKQRQVLIXF VLLGIAQAGS EPRHYSVAEE MDSGSFVANL ENSP00000354293/1-776 MEIG------ ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 MEIG------ ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 METG------ ---------- ---------- ---------- ---------- 51 100 bmy_12372T0/1-1480 LKDLGLEVDD LAARAPRVVS KGKKMPLHFD RQTGDLLLNE KLDREELCGP ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_12372T0/1-1480 TKPCVLPFQM LLENPLKFFQ AELRIRDIND HSPVFLDKEI ILKISESITP ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_12372T0/1-1480 GTTFLIERAQ DLDLHYEVHV LENSPIGSQV AIVSARDLDI GTYGEISYVL ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_12372T0/1-1480 SQASEDIRKT FGINAKSGEL LLTQELDFES IQTYTLNIQA TDGGGLSGSC ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_12372T0/1-1480 VVFVQVMDLN DNPPELTMST VISEIPENLQ ETVIAVFSVS DPDSGDNGRM ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_12372T0/1-1480 VCSIQDDLPF ILKPSVENFY TLVTNTALDR ETRSEYNITI TVTDMGTPRL ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_12372T0/1-1480 KTQHNITVLV SDVNDNAPAF TQTSYTLSVR ENNSPALHIG SVRATDRDAG ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_12372T0/1-1480 ANAQVTYSLL PPLDAHVPLA SLVSINPDNG HLFALRSLDY EALRAFEFRV ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 451 500 bmy_12372T0/1-1480 GAADRGSPAL SSQALVRVLV ADDNDNAPFV LYPLQNASAP CTELVPRAAE ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_12372T0/1-1480 AGYLVTKVVA VDGDSGQNAW LSYQLLKATE PGLFGVWAHN GEVRTARLLS ENSP00000354293/1-776 ---------- ---------- ---------- ------WMHN R--------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ------WMHN P--------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ------RMHN H--------- 551 600 bmy_12372T0/1-1480 ERDAAKHRLV VLVKDNGEPP LSASVTLHVL LVDGFSQPYL PAPEAEAADA ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_12372T0/1-1480 APAAPLTVYL VVALASVSSL FLFSVLVFVA VRLCRRGGAA SVGRCSVPEG ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_12372T0/1-1480 PFPGHLVDVS GTGTLSQSYQ YEVCLTGGSG TSKFFKPIIP NFLTQDEERA ENSP00000354293/1-776 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_12372T0/1-1480 GGERFLRQRQ VLFLFVFLGG SLAGSQSRRY SVAEEKERGF LISNLAKDLG ENSP00000354293/1-776 ------RQRQ VLVFFVLLSL SGAGAELGSY SVVEETERGS FVANLGKDLG ENSTTRP00000004662/1-648 ------RKRQ VLVFFVLLSM YGASAELGPY SVVEETERGS FVANVGKDLG ENSBTAP00000053109/1-776 ------RQRQ VLVFFVCLSM SWGSADLGPY SVVEETERGS FVANLAKDLE 751 800 bmy_12372T0/1-1480 LSVGKLAARG AQVVSKGNRQ HFQLNHQTGD LLLHEKLDRE ELCGSAEPCI ENSP00000354293/1-776 LGLTEMSTRK ARIISQGNKQ HLQLKAQTGD LLINEKLDRE ELCGPTEPCI ENSTTRP00000004662/1-648 LGLTEMSTRG ARIISQWNKE HLQLKVQTGD LLINDKLDRE KLCGPSEPCI ENSBTAP00000053109/1-776 LGLAEMATRA VRIISQGNKE HLQLKVQTGD LLLNEKLDRE ELCGPTEPCI 801 850 bmy_12372T0/1-1480 LHFQILLQNP LQFITNELQV IDVNDHSPAF SENEMQLKIL ENTPPGTIIP ENSP00000354293/1-776 LHFQVLMENP LEIFQAELRV IDINDHSPMF TEKEMILKIP ENSPLGTEFP ENSTTRP00000004662/1-648 LHFQVLMEKP LEIFQAELRV KDINDHSPVF TEREMFLKIP ENSPIGISFP ENSBTAP00000053109/1-776 LHFQVLMEKP LEIFQAELRV KDINDHSPVF NEREIILKIP ENSPTGTAFP 851 900 bmy_12372T0/1-1480 LGNAEDLDVG RNSLQNYTIT PNSHFHVLTR SRRDGRKYPE LVLDKALDRE ENSP00000354293/1-776 LNHALDLDVG SNNVQNYKIS PSSHFRVLIH EFRDGRKYPE LVLDKELDRE ENSTTRP00000004662/1-648 LSNALDLDVG SNNVQNYKIS PNSHFRVLTQ NRSDGRKYPE LVLDKELDRE ENSBTAP00000053109/1-776 LSNALDLDVG SNNIQNYTIS PNFHFRVITH KRSDGRKYPE LVLDKELDRE 901 950 bmy_12372T0/1-1480 EQPELRLMLT ALDGGTPRRS GTVQVHILVL DINDNTPEFT QSLYEVQVLE ENSP00000354293/1-776 EEPQLRLTLT ALDGGSPPRS GTAQVRIEVV DINDNAPEFE QPIYKVQIPE ENSTTRP00000004662/1-648 EEPEISLTLT ALDGGSPPRY GTAQVRIEVV DINDNAPEFE QSLYKVHIPE ENSBTAP00000053109/1-776 EEPEISLTLT ALDGGSPPRY GTAQVRIEVV DINDNAPQFQ QLLYKVHIPE 951 1000 bmy_12372T0/1-1480 NSPVNSLIVT VSASDLDTGN LGTISYAFFH VSEEIRKTFQ LNPVTGDIRL ENSP00000354293/1-776 NSPLGSLVAT VSARDLDGGA NGKISYTLFQ PSEDISKTLE VNPMTGEVRL ENSTTRP00000004662/1-648 DSPVDSLVVT VSASDVDSGV YGKISYAFFQ PSEDISKTLE VNPMTGEIRL ENSBTAP00000053109/1-776 NSPVGSLVVT VSASDVDSGL YGKISYTFFQ PSEDISKTLE VNPKTGEIRL 1001 1050 bmy_12372T0/1-1480 IKYLNFEAIQ TYEVDIEAKD GGGLSGKSTV IVQVVDVNDN PPELTLSSIT ENSP00000354293/1-776 RKQVDFEMVT SYEVRIKATD GGGLSGKCTL LLQVVDVNDN PPQVTMSALT ENSTTRP00000004662/1-648 RKKVDFETVL SYEVDIKATD GGGLSGKCTL LLQVVDVNDN PPEVTVSALT ENSBTAP00000053109/1-776 RKQVDFETVF SYEVDVKATD GGGLSGKCTL LLQVVDVNDN PPEVTVSALT 1051 1100 bmy_12372T0/1-1480 SPIPENSPET VVAVFSVSDL DSGDNGKMVC SIENDLPFIL KPSVENFYTL ENSP00000354293/1-776 SPIPENSPEI VVAVFSVSDP DSGNNGKTIS SIQEDLPFLL KPSVKNFYTL ENSTTRP00000004662/1-648 TPIPENSPDI VVAVFSVSDP DSGDNGKTIS SIQDDLPFLL KPSVKNFYTL ENSBTAP00000053109/1-776 SPIPENSPEI VVAVFSVSDP DSGDNGKTTC SIQDDLPFLL KPSVKNFYTL 1101 1150 bmy_12372T0/1-1480 VSEGELDREI RAEYNITITV TDMGTPRLKT QHNITVLVSD VNDNAPAFTQ ENSP00000354293/1-776 VTERALDREA RAEYNITLTV TDMGTPRLKT EHNITVQISD VNDNAPTFTQ ENSTTRP00000004662/1-648 VTQKTLDREE RAEYNITITV TDMGTPRLKT EHNITVLVSD VNDNAPAFTQ ENSBTAP00000053109/1-776 VTERTLDREE RAEYNITITV TDMGTPRLKT EHNITVLVSD VNDNAPAFTQ 1151 1200 bmy_12372T0/1-1480 TSYTLSVREN NSPALHIGSV RATDRDAGAN AQVTYSLLPP LDAHVPLASL ENSP00000354293/1-776 TSYTLFVREN NSPALHIGSV SATDRDSGTN AQVTYSLLPP QDPHLPLASL ENSTTRP00000004662/1-648 TSYTLSVREN NSPALHIGSV RATDRDAGAN AQVTYSLLPP LDAHVPLASL ENSBTAP00000053109/1-776 TSYTLWVREN NSPALHIGSV SATDTDAGAN AQVTYSLLPP PDPLVPLASL 1201 1250 bmy_12372T0/1-1480 VSINPDNGHL FALRSLDYEA LRAFEFRVGA ADRGSPALSS QALVRVLVAD ENSP00000354293/1-776 VSINADNGHL FALRSLDYEA LREFEFRVSA TDRGSPALSS EALVRVLVLD ENSTTRP00000004662/1-648 VSINPDNGHL FALRSLDYEA LRAFEFRVGA ADRGSPALSS QALVRVLVVD ENSBTAP00000053109/1-776 VSINPDNGHL FALTSLDYEA LRAFEFRVGA TDRGSPALSS QALVRVLVAD 1251 1300 bmy_12372T0/1-1480 DNDNAPFVLY PLQNASAPCT ELVPXAAEAG YLVTKVVAVD GDSGQNAWLS ENSP00000354293/1-776 ANDNSPFVLY PLQNGSAPCT ELVPRAAEPG YLVTKVVAVD GDSGQNAWLS ENSTTRP00000004662/1-648 DNDNAPFVLY PLQNASAPCT ELVPRAAEAG YLVTKVVAVD GDSGQNAWLS ENSBTAP00000053109/1-776 ANDNAPFVLY PLQNASAPCT ELVPRAAEPG YLVTKVVAVD GDAGQNAWLS 1301 1350 bmy_12372T0/1-1480 YQLLKATEPG LFGVWAHNGE VRTARLLSER DAAKHRLLVL VKDNGEPPLS ENSP00000354293/1-776 YQLLKATEPG LFGVWAHNGE VRTARLLSER DAAKQRLVVL VKDNGEPPRS ENSTTRP00000004662/1-648 YQLLKATEPG LFGVWAHNGE VRTARLLSER DAAKHRLLVL VKDNG----- ENSBTAP00000053109/1-776 YQLLKATEPG LFGVWAHNGE VRTARLLSER DAPKQRLVVL VKDNGEPPLS 1351 1400 bmy_12372T0/1-1480 ASVTLHVLLV DGFSQPYLXA PEAEAADAAP AAPLTVYLVV ALASVSSLFL ENSP00000354293/1-776 ATATLHVLLV DGFSQPFLPL PEA-APGQTQ ANSLTVYLVV ALASVSSLFL ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 ASVTLHVLLV DGFSQPYLPA PEAEAAAAAP ADPLTVYLVV ALASVSSLFL 1401 1450 bmy_12372T0/1-1480 FSVLVFVAVR LCRRGGEASV GRCSVPEGPF PGHLVDVSGT ETLSQSYQYE ENSP00000354293/1-776 FSVLLFVAVR LCRRSRAASV GRCSMPEGPF PGRLVDVSGT GTLSQSYQYE ENSTTRP00000004662/1-648 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053109/1-776 FSVLVFVAVR LCRRGGEASA GRCPVAEGHF PGHLVDVSGT GTLSQSYQYE 1451 1500 bmy_12372T0/1-1480 VCLTGGSGLN EFKFLKPILP SGLIQDTGQD ENSP00000354293/1-776 VCLTGGSETS EFKFLKPIIP NFSP------ ENSTTRP00000004662/1-648 ---------- ---------- ---------- ENSBTAP00000053109/1-776 LCLTRETGTN EFKVLKPILP NLS-------