KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:07 2014 Check: 00 .. Name: ENSTTRP00000001286/1-830 Len: 939 Check: 7632 Weight: 1.00 Name: ENSP00000295824/1-833 Len: 939 Check: 586 Weight: 1.00 Name: ENSBTAP00000053164/1-858 Len: 939 Check: 5364 Weight: 1.00 Name: bmy_13196T0/1-574 Len: 939 Check: 4357 Weight: 1.00 Name: BACU009975/1-812 Len: 939 Check: 1857 Weight: 1.00 // 1 50 ENSTTRP00000001286/1-830 ---------- ---------- ---------L SMDVALTQEG KDDLGERRVF ENSP00000295824/1-833 ---------- ---------- ---------M NMEIGHPHEG KDDLGDKRVI ENSBTAP00000053164/1-858 MCSFLRVPSP KGLEPSKGPV QLTPQRKSPL SMEVGLAPEG KDDLEERRVF bmy_13196T0/1-574 ---------- ---------- ----METWPL ILQGEMKYEG NQ-------- BACU009975/1-812 ---------- ----MSALGG MRVSERKSPL SMDVALTQEG KDDLGERRVF 51 100 ENSTTRP00000001286/1-830 MGTTSPTELG LRVGLGKEDS PC------SN KYEERMASPE TKCPSSNGLD ENSP00000295824/1-833 MGTKFPMELG IRVGLGKEDS RCGESPVVSN KCEGRMAPPE TKFPLSKGLE ENSBTAP00000053164/1-858 MGTTSPTELG LRVGL-RKDF PC------SK TYEERMASPE IRSPSSKGLE bmy_13196T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU009975/1-812 MGTTSPTELG LRVGLGKEDS PC------RH KYEERMASPE TKCPSSNGLD 101 150 ENSTTRP00000001286/1-830 IRLKRQNISR AFMDGSNLGV SRVSASQETK CPLRMLPGRA GLENERFLAG ENSP00000295824/1-833 MGLERQNISR TVMQRGSLGV DSVSASQGTK PSL--LPGRM GLENESLLAG ENSBTAP00000053164/1-858 LRLKRQNISR TVMDGSNLGV HRVSASQETK PPLSALPGRV GLEKERFLAG bmy_13196T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU009975/1-812 IRLKRQNISR TFMDGSNLGV NRVSASQEKK LPLRMLPGRE GLENERFLAG 151 200 ENSTTRP00000001286/1-830 CRPGRVTQSP LGLVCESPQA LGSRRCPVAG DPEELGASVG KQPTLGMEPR ENSP00000295824/1-833 YTHERIIQPP LGRVCGSSQA AGSRRAPLAS GPEGVEELVG K-PAFVMEPR ENSBTAP00000053164/1-858 YCPGRVTQPP LGQGCESPQA SGGRRCPVTG DPEGFGASVS KLPALGMECR bmy_13196T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU009975/1-812 CCPRRVTRSP LGLVCESPQA LGSRRCPVAG DPEELGASVG KQPTLGMEPR 201 250 ENSTTRP00000001286/1-830 RGLEKESTCV VMKPSVEMQP PVQVDMGFPQ PEDPDETKPT EPQMGLVIEP ENSP00000295824/1-833 QEMEKESTCV LMKPNTEIKL PVEVDIGLTQ AEGPDETKNT EPQMGLVIEP ENSBTAP00000053164/1-858 GELGGESACV VMKPRAETEP PVEVDMGLTR LEEPAEMESP EPQMGLVMEP bmy_13196T0/1-574 ---------- ---------- ---------- ---------- ---------- BACU009975/1-812 QELEKESTCV VMKPSTEIQP PVELDLGLPQ PEDPDETKPT EPQMGLVIGP 251 300 ENSTTRP00000001286/1-830 SECQLAQQPE EQRETENIEP GVEPPDRIRP IYSGKFFDRL PCWPSAGKVL ENSP00000295824/1-833 PQCQFAQQHE QRKEAGNIES GVEPPDRIRP IYSGKFFDRT PCWPSAGKVI ENSBTAP00000053164/1-858 PAWQLAQQPE EQREAENTEP GVEPPDRIRP IYSGKFFDRM PCWPSAGKVL bmy_13196T0/1-574 ---------- ---------- ---------- ---------- ----GAGKVL BACU009975/1-812 SECQLAQQPE VQKETENIEP GLEPPDRIRP IYSGKFFDRL PCLPSAGKVL 301 350 ENSTTRP00000001286/1-830 PIGYRAANCL TEKLPR---- -------LVT PPEAKKFFNF RYPPAGAERV ENSP00000295824/1-833 PVGYRVATCL TEKLPR---- -------LIT PPEAKKYFNF RYPPAGVERV ENSBTAP00000053164/1-858 PIGYRAATCL TERFPR---- -------LMT PPEAKKFFNF RYPPAGAERV bmy_13196T0/1-574 PIGYRAANCL TEKLPRDVSF FGAVDPQLMT PPEAKKFFNF RYPPAGAERV BACU009975/1-812 PIGYRAANCL TEKLPR---- -------LMT PPEAKKFFNF RYPPAGAERV 351 400 ENSTTRP00000001286/1-830 FYGRANDPQI APSLTHGIRS KISTPAKVLI NPQPITTFQQ KMKDKKESVY ENSP00000295824/1-833 FYGRANDPQI APYLTHGIRS KISVLANTLI NPQPITTFQQ KIKDKKESIY ENSBTAP00000053164/1-858 FYGRANDPQI APSLTHGIRS KISIPAKVLI NPQPITTFQQ KMKDKKESVY bmy_13196T0/1-574 FYGRANDPQI APSLTHGIRS KISTPAKVLI NPQPITTFQQ KMKDKKESVY BACU009975/1-812 FYGRANDPQI APSLTHGIRS KISTPAKVLI NPQPITTFQQ KMKDKKESVY 401 450 ENSTTRP00000001286/1-830 FSNQRAPLGK SHDQTPGLPK GLDILNTTFG TAVIKELPAR EVVNPPKSYQ ENSP00000295824/1-833 LSNRRAPLGK SHDQAPGLPK GMDTTNTTFG TAVIKEYSAK DVVNPPKSYE ENSBTAP00000053164/1-858 FSNQRAPLGK SHDQTPGLPK GLDILNTTFG TAIVRETSAR DMVNPPKPYK bmy_13196T0/1-574 FSNQRAPLGK SHDQTPGLPK GLDILNTTFG TAVIR----- ---------- BACU009975/1-812 FSNQRAPLGK SHDQTPGLPK GLDILSTTFG TAVIRELSAR EVVNPPKSYQ 451 500 ENSTTRP00000001286/1-830 EVFEEGQAGH DLYIVSHNDY YAGEAKHRKY NPSSFHRFNL YGIPTPHFND ENSP00000295824/1-833 EVFKEGNEGH DLYVVSHNDY YAGEAKNRKY NPSSFHRCSV YGVPTPHFND ENSBTAP00000053164/1-858 EVFEEAQAGH DLYVVSHNDY FVGEAKNRKY DPSSFHRFNL YGIPTPHFND bmy_13196T0/1-574 ---------- ---------- --GEAKHRKY NPSSFHRFXL YGIPTPHFND BACU009975/1-812 EVFEEGQAGH DLYIVSHDDY YAGEAKHRKY NPSSFHRFNL YGIPTPHFND 501 550 ENSTTRP00000001286/1-830 GRNMAKTLHW LHELQMKRGA KVVSKRVDDF KEKFQHKLGR TLDPIAETMN ENSP00000295824/1-833 GRAMAKSLYW LHELQMKRGA KFVSKRADDF KEKFQHKLGR VLDPIAETMN ENSBTAP00000053164/1-858 GRNMAKTLHW LHELQMKRGA KIVSKRVDDF KEKFQHRLGR VLDPIAETMN bmy_13196T0/1-574 GRNMAKTLHW LHELQMKRGA KVVSKRVDDF KEKFQHKLGR ILDPIAETMN BACU009975/1-812 GRNMAKTLRW LHELQMKRGA KVVSKRVDDF KEKFQHKLGR ILDPIAETMN 551 600 ENSTTRP00000001286/1-830 VPPDHIFGAC LRPDDYXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000295824/1-833 VPPDCTFGAC LRPEEYGVGD LIHNRLPDEY LRGKDRQRAL IAAVRHHLKK ENSBTAP00000053164/1-858 VPPDYTFGAF LRPEDYGVGD LIHRRLPGEY LRGKDRQRGL VAAVRHHLKK bmy_13196T0/1-574 VPPDHTFGAC LRPEEYGAGD LIHRRLPGEY LRGKDRQRAL VAAVRHHLKK BACU009975/1-812 VPPDHTFGAC LRPEEYG--- ---------- -PGQKRASAY LSSTRQSY-- 601 650 ENSTTRP00000001286/1-830 XXXXXXXXXX XXXXXXX--- -XKGDGAIDK AELREACDQA SLHIDEKLLD ENSP00000295824/1-833 VNYQKFDTLL AAFRHYD--- -KKGDGMIDK DELQEACDQA NLSLDDKLLD ENSBTAP00000053164/1-858 VNYQNFDTLL AAFRHYD--- -KKGDGVIDR AELQEACDQA CLHLDEKLLD bmy_13196T0/1-574 VNYQNFDTLL AAFRHYDKAS SKKGDGAIDK AELREACDQA SVHIDEKLLD BACU009975/1-812 ---------- ---------- -LKGDGAIDK AELREACDQA SVHIDEKLLD 651 700 ENSTTRP00000001286/1-830 QLFEYCDVDN DGLINYLEFA NFLNWKDKTP LKEYEERVII KXXXXXXXXX ENSP00000295824/1-833 QLFDYCDVDN DGFINYLEFA NFLNWKDKML LKEYEERVII KGRKPDCVNP ENSBTAP00000053164/1-858 QLFEYCDVDK DGLINYLEFA NFLTWKDKTP LKEYEEKVLI KGRKADCANP bmy_13196T0/1-574 QLFEYCDVDN DGLINYLEFA NFLNWKDKTP LKEYEERVII KGGKPDCANP BACU009975/1-812 QLFEYCDVDN DGLINYLEFA NFLNWKDKTP LKEYEERVII KGGKPDCANP 701 750 ENSTTRP00000001286/1-830 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000295824/1-833 TEANVEEPEQ TLLIKPEDIV LKEAGSTEKT LRTLLRPSDK VSNYYKTTSS ENSBTAP00000053164/1-858 AEANVEESEP ALLLKPEDIV LKEPGSSEKT LRTLLRPSDK VSNHYKTTSS bmy_13196T0/1-574 AEANVEESEP ALLIKPEDIV LKEPGSSEKT LRTLLRPSDK VSNHYKTTSS BACU009975/1-812 AEANVEESEP ALLIKPEDIV LKEPGSSEKT LRTLLRPSDK VSNHYKTTSL 751 800 ENSTTRP00000001286/1-830 XXXXXXXXXX XXXYPTYGVP TIRSDIPAPR IRRISDRTNY GEEGNAYSLL ENSP00000295824/1-833 EINAIVGAIP STCYPICGVP TIRSDIPAPR IRRISDRTNY GEEGSAYSLL ENSBTAP00000053164/1-858 EISAVVGAVP STCYPTYGVP TIRSDIPAPL IRRVSDRTSY GEEGNAYSLL bmy_13196T0/1-574 EISAV----- ---------- ---------- ---------- ---------- BACU009975/1-812 EISAVVGAVP STCYPICGVP TIRSDIPAPQ IRRISDRTNY GEDGNAYSLL 801 850 ENSTTRP00000001286/1-830 YPTIFGQKGL FERDFFKTRS KKEIAEILCN IGVKLPEDEF ENVWNLASKK ENSP00000295824/1-833 YPTIFARKGV FERDFFKTRS KEEIAEILCN IGVKLSDEEF ENVWNLASKK ENSBTAP00000053164/1-858 HPTIFAQKGV FERDFFKTRS KQEISEILCN IGVKLSEDEF ENVWNLASKK bmy_13196T0/1-574 -------KGL FERDFFKTRS KKEIAEILCN IGVKLSEDEF ENVWNLASKR BACU009975/1-812 HPTIFGQKGL FERDFFKTRS KKEIAEILCN IGVKLSEDEF ENVWNLASEK 851 900 ENSTTRP00000001286/1-830 HHGGQVCVET IRTVLSELQY ADWTKCKAAM ---------- ---------- ENSP00000295824/1-833 HHRGEVCVEN IRNVLDELRH ADRIKCKTLM ---------- ---------- ENSBTAP00000053164/1-858 HHRGEVCVEN IRSVLDELQH ADGAKCKAAT ---------- ---------- bmy_13196T0/1-574 HHRGEVCVEN IRNVLNELQH ADWTKCKTAV TKEFAKHLEL TFKLTKGVAQ BACU009975/1-812 HHRGEVCVEN IRNVLNELQH ADWTKCKTAV ---------- ---------- 901 950 ENSTTRP00000001286/1-830 ---------- ---------- ---------- --------- ENSP00000295824/1-833 ---------- ---------- ---------- --------- ENSBTAP00000053164/1-858 ---------- ---------- ---------- --------- bmy_13196T0/1-574 NDAGSVTVTQ LKLNGLLSLC QHLGKTDLIT RSRILGIKT BACU009975/1-812 ---------- ---------- ---------- ---------