KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:11 2014 Check: 00 .. Name: ENSP00000352413/1-1100 Len: 1298 Check: 2277 Weight: 1.00 Name: ENSBTAP00000053166/1-1089 Len: 1298 Check: 9195 Weight: 1.00 Name: ENSTTRP00000013810/1-1091 Len: 1298 Check: 7012 Weight: 1.00 Name: bmy_07520T0/1-1147 Len: 1298 Check: 5437 Weight: 1.00 Name: BACU016037/1-1261 Len: 1298 Check: 7066 Weight: 1.00 // 1 50 ENSP00000352413/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053166/1-1089 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013810/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_07520T0/1-1147 ---------- ----MFHYQ- ------IPKG AAD------- ---------- BACU016037/1-1261 MNVGSKVLML LGAEEADYDP CFPSVWLPCG RLDVQYRDSR QCFTTKYQRV 51 100 ENSP00000352413/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053166/1-1089 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013810/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_07520T0/1-1147 -----GLLAD ATSFNLHTEA LNLLLCGPAG LPT------- ----PIPDP- BACU016037/1-1261 LQMGFSLMLQ VSTSTEKRST YSFVVQRDSP PPSQTQQKAA TGRQPVSHAT 101 150 ENSP00000352413/1-1100 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053166/1-1089 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013810/1-1091 ---------- ---------- ---------- ---------- ---------- bmy_07520T0/1-1147 ---------- -----AEALS IGYRRAVQLL RTGGQSTSQI QFRNLRWSRL BACU016037/1-1261 LEAAGMKVTL ETNGDARAPS IGYRRAVQLL RTGGQSTSQI QFRNLRWSRL 151 200 ENSP00000352413/1-1100 ---------- ---------- -MKTSKASQR YRGIRRNASQ CYLYQESLLL ENSBTAP00000053166/1-1089 ---------- ---------- -MKPPKASQR FRSIRRNANQ HYFYQESLLL ENSTTRP00000013810/1-1091 ---------- ---------- -MKPSKASQR YRSIRRNASQ HYFYQESLLL bmy_07520T0/1-1147 LPAGFPAPCP PVLITGSQSA PMKPSKASQR YRSIRRNASQ HYFYQESLLL BACU016037/1-1261 LPAGFPAPCP PALITGSQSA AMKPSKASQR YRSIRRNASQ HYFYQESLLL 201 250 ENSP00000352413/1-1100 SNLDDSFSAD ETGDSNDPEQ IFQNIQFQKD LMANIRCRPW TMGQKLRALR ENSBTAP00000053166/1-1089 SNLEDSFTAD ETGDSHDPEQ IFQNIQFQKD LMANIRCRPW TMGQKLRALR ENSTTRP00000013810/1-1091 SNLDDSFTAD ETGDSHDPEQ IFQNIQFQKD LMANIRCRPW TMGQKLRALR bmy_07520T0/1-1147 SNLDDSFTAD ETGDSHDPEQ IFQNIQFQKD LMANIRCRPW TMGQKLRALR BACU016037/1-1261 SNLDDSFTAD ETGDSHDPEQ IFQNIQFQKD LMANIRCRPW TMGQKLRALR 251 300 ENSP00000352413/1-1100 QAKNIVLKFE GRLTRTRGYQ AAGAE----- ---------- ---------- ENSBTAP00000053166/1-1089 RAKDIVLKFE GRLTRTRGYQ AAGAE----- ---------- ---------- ENSTTRP00000013810/1-1091 RAKDIVLKFE GRLTRTRGYQ AAGAE----- ---------- ---------- bmy_07520T0/1-1147 RAKDIVLKFE GRLTRTRGYQ AAGAE----- ---------- ---------- BACU016037/1-1261 RAKDIVLKFE GRLTRTRGYQ AAGAEEMKNQ KAMVFLSMLE EKKPGEQYKG 301 350 ENSP00000352413/1-1100 -LWRKFARLA CNFVVIFIPW EMRIKKIESH FGSGVASYFI FLRWLFGINI ENSBTAP00000053166/1-1089 -LWRKFARLA CNFVVIFIPW EMRIKKIESH FGSGVASYFI FLRWLFGINI ENSTTRP00000013810/1-1091 -LWRKFARLA CNFVVIFIPW EMRIKKIESH FGSGVASYFI FLRWLFGINI bmy_07520T0/1-1147 -LWRKFARLA CNFVVIFIPW EMRIKKIESH FGSGVASYFI FLRWLFGINI BACU016037/1-1261 NLWRKFARLA CNFVVIFIPW EMRIKKIESH FGSGVASYFI FLRWLFGINI 351 400 ENSP00000352413/1-1100 VLTIMTGAFI VIPELIAGQP FGSTARKTIP KEQVSSAQDL DTVWSLGGYL ENSBTAP00000053166/1-1089 VLTIMTGAFI VLPELIAGQP FGSTASKTIP KEHIASAQDL DTVWSLGGYL ENSTTRP00000013810/1-1091 VLTIMTGAFI VVPEXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_07520T0/1-1147 VLTIMTGAFI VIPELIAGQP FGSTASKTIP KEHIASAQDL DTVWSLGGYL BACU016037/1-1261 VLTIMTGAFI VIPELIAGQP FGSTASKTIP KEHIASAQDL DTVWSLGGYL 401 450 ENSP00000352413/1-1100 QYSVLFYGYY GRERKIGRAG YRLPLAYFLV GMAVFAYSFI ILLKKMAKNS ENSBTAP00000053166/1-1089 QYSVLFYGYY GRERRIGRAG YRLPLAYFLV GMAVFAYSFI ILLKKMAKNS ENSTTRP00000013810/1-1091 XXXXXXXXXX XXXXRIGRAG YRLPLAYFVV GMAVFAYSFI ILLKKMAKNS bmy_07520T0/1-1147 QYSVLFYGYY GSERRIGRAG YRLPLAYFLV GMAV------ ---------- BACU016037/1-1261 QYSVLFYGYY GSERRIGRAG YRLPLAYFLV GMAVFAYSFI ILLKKMAKNS 451 500 ENSP00000352413/1-1100 RTSLASASNE NYTFCWRVFC AWDYLIGNPE AAESKTAAIV NSIREAILEE ENSBTAP00000053166/1-1089 RMSLASASNE NYTFCWRVFC AWDYLIGNPE AAESKTAAIV NSIREAILEE ENSTTRP00000013810/1-1091 RMSLASASNE NYTFCWRVFC AWDYLIGNPE AAESKTAAIV NSIREAILEE bmy_07520T0/1-1147 -------GGR EQNRCHREQH QGGYTGRTGE EKEQKPGALC RARYIVLIPA BACU016037/1-1261 RMSLASASNE NYTFCWRVFC AWDYLIGNPE AAESKTAAIV NSIREAILEE 501 550 ENSP00000352413/1-1100 QEKKKSKNLA VTICLRIIAN ILVLLSLAGS IYLIYFVVDR SQKLEQSKKE ENSBTAP00000053166/1-1089 QEKKKSKNLA VTICLRVVAN ILVLVSLAGS IYLIYFVVDR SQKLAQSKKE ENSTTRP00000013810/1-1091 QEKKKSKNLA VTICLRVIAN ILVLLSLAGS IYLIYFVVDR SQKLAQSKKE bmy_07520T0/1-1147 SPRR-----A VTICLRVVAN ILVLLSLAGS IYLIYFVVDR SQKLAQAKKE BACU016037/1-1261 QEKKKNKNLA VTICLRVVAN ILVLLSLAGS IYLIYFVVDR SQKLAQSKKE 551 600 ENSP00000352413/1-1100 LTLWEKNEVS VVVSLVTMIA PSAFDLIAAL EMYHPRTTLR FQLARVLVLY ENSBTAP00000053166/1-1089 LTLWEKNEVS VVVSLVTMLA PSAFDLIAAL EMYHPRTTLR FQLARVLVLY ENSTTRP00000013810/1-1091 LTLWEKNEVS VVVSLVTMLA PSAFDLIAAL EMYHPRTTLR FQLARVLVLY bmy_07520T0/1-1147 LTLWEKNEVS VVVSLVTMLA PSAFDLIAAL EMYHPRTTLR FQLARVLVLY BACU016037/1-1261 LTLWEKNEVS VVVSLVTMLA PSAFDLIAAL EMYHPRTTLR FQLARVLVLY 601 650 ENSP00000352413/1-1100 LGNLYSLIIA LLDKVNSMSI EEMATKNNTS HWIDSTTFFA TRTAPEEEKW ENSBTAP00000053166/1-1089 LGNLYSLIIA LLDKVNSMSI EEAAPQNSTS HWIDSTVFFA TRAAPREDRW ENSTTRP00000013810/1-1091 LGNLYSLIIA LLDKVNSMST EETAPPNSTT HWIDSTIFFV TRAAPGEEKW bmy_07520T0/1-1147 LGNLYSLIIA LLDKVNSMST EETAPPNSTS HWIDSTIFFV TRAAPGEEKW BACU016037/1-1261 LGNLYSLIIA LLDKVNSMST EETAPPNSTS HWIDSTIFFV TRAAPGEEKW 651 700 ENSP00000352413/1-1100 STSRPGMGLR RNNTWALEET SISAYTMPLI KANKTSLHTQ SPQDQCWETY ENSBTAP00000053166/1-1089 STLGPGIGLR RNSTWASDEA NIPTYISPLS GANKTTVSTR SPQDQCWETY ENSTTRP00000013810/1-1091 STPGPGIGLR RNSTWALEQA NVLTYTSPLS EANKTTASTQ SPQGQCWETY bmy_07520T0/1-1147 STPGPGIGLR RNSTWALEQA NLLTYTSPLS EANKTTASTQ SPQGQCWETY BACU016037/1-1261 STPGPGIGLR RNSSWALEQA NVLTYTSPLS EANKTTASTQ SPQGQCWETY 701 750 ENSP00000352413/1-1100 VGQEMLKLSI IDMLFTVASI LLIDFFRGLF VRYLSDYWCW DLESKFPEYG ENSBTAP00000053166/1-1089 VGQEMLKLSI IDMLFTVASI LLIDFFRGLF VRYLSDYWCW DLESKFPEYG ENSTTRP00000013810/1-1091 VGQEMLKLSI IDMLFTVASI LLIDFFRGLF VRYLSDYWCW DLESKFPEYG bmy_07520T0/1-1147 ---EMLKLSI IDMLFTVASI LLIDFFRGLF VRYLSDYWCW DLESKFPEYG BACU016037/1-1261 VGQEMLKLSI IDMLFTVASI LLIDFFRGLF VRYLSDYWCW DLESKFPEYG 751 800 ENSP00000352413/1-1100 EFKIAENVLH LVYNQGMIWM GAFFSPCLPA FNVLKLIGLM YLRSWAVLTC ENSBTAP00000053166/1-1089 EFKIAENVLH LVYNQGMIWM GAFFSPCLPA FNVLKLIGLM YLRSWAVLTC ENSTTRP00000013810/1-1091 EFKIAENVLH LVYNQGMIWM GAFFSPCLPA FNVLKLIGLM YLRSWAVLTC bmy_07520T0/1-1147 EFKIAENVLH LVYNQGMIWM GAFFSPCLPA FNVLKLIGLM YLRSWAVLTC BACU016037/1-1261 EFKIAENVLH LVYNQGMIWM GAFFSPCLPA FNVLKLIGLM YLRSWAVLTC 801 850 ENSP00000352413/1-1100 NVPHQQVFRA SRSNNFYLAM LLFMLFLCML PTIFAIVRYK PSLNCGPFSG ENSBTAP00000053166/1-1089 NAPHQQVFRA SRSNNFYLAM LLFMLFLCML PTIFAIVRYK PSLNCGPFSG ENSTTRP00000013810/1-1091 NVPHQQVFRA SRSNNFYLAM LLFMLFLCML PTIFAIVRYK PSLNCGPFSG bmy_07520T0/1-1147 NVPHQQVFRA SRSNNFYLAM LLFMLFLCML PTIFAIVRYK PSLNCGPFSG BACU016037/1-1261 NVPHQQVFRA SRSNNFYLAM LLFMLFLCML PTIFAIVRYK PSLNCGPFSG 851 900 ENSP00000352413/1-1100 QEKIYDIVSE TIEKDFPVWF GSVVGHISSP VVILPAVLLL FMLIYYLQSI ENSBTAP00000053166/1-1089 QEKIYDIVSE TIEKDFPTWF GSVIGYISSP VVILPAVLLL FMLIYYLQSI ENSTTRP00000013810/1-1091 QEKIYDIVSE TIEKDFPAWF GSVVGYISSP VVILPAVLLL FMLIYYLQSI bmy_07520T0/1-1147 QEKIYDIVSE TIEKDFPAWF GSVVGYISSP VVILPAVLLL FMLIYYLQSI BACU016037/1-1261 QEKIYDIVSE TIEKDFPAWF GSVVGYVSSP VFILPAVLLL FKSPTY---- 901 950 ENSP00000352413/1-1100 ARSLKLSNHQ LKMQIQNARS EDKKKVAQMV E-ARIQTQEE STKKLPNDSD ENSBTAP00000053166/1-1089 ARSLKLSNHQ LRMQIQNARS EDRKKVAQMV E-ARIQTQDE TTKRFPKDSD ENSTTRP00000013810/1-1091 ARSLKLSNHQ LRTQIQNARS EDKKKVAQMV EGKRIQTQDD STKRFPKDSD bmy_07520T0/1-1147 ARSLKLSNHQ LRMQIQNA-- ---------- --TRIQTQDE STKRFPKDSD BACU016037/1-1261 --------EQ VPLRERN--- ---------- --PRIQTQDE STKRFPKDSN 951 1000 ENSP00000352413/1-1100 LTSQLSSAHS GTPQNNGNVA HFDSGSSKSG RIETVAQSMP QSPRPGDRAP ENSBTAP00000053166/1-1089 LGSQLSSAYS VTPQNNGTVV NFDSSSSRSS RVETVAQPTT PSPQPGPGSP ENSTTRP00000013810/1-1091 FGSQLSSAHS ATPQNNGNVV IFDSSSSMSS RVETITQPVP PSPQPGPGNP bmy_07520T0/1-1147 FGSQLSSAHS ATPQNNGNVV NFDSSSSKSS RVETVTQPTP PSPQPGPGSP BACU016037/1-1261 FGSQLSSAHT ATPQNNGNVV NFDSSSSKSS RVETITQPTP LSPQPGPGSP 1001 1050 ENSP00000352413/1-1100 SSPLPGVPKS RLEHETNRYL HGLCASTSDL HRNRSRTPMT FTTHIEDVHS ENSBTAP00000053166/1-1089 SSPLPGFSRS R--HYSTRYP CGPRMSTSDL HRSRSCTPGM FTKHIEDVHS ENSTTRP00000013810/1-1091 SLPLPGVSRS G--HNSTRYP RGLCASTSDL YRKRPCTPGM FTKRIEDVHS bmy_07520T0/1-1147 SLPLPGISRS G--RNSTRYP RGLCASTGDL YRKRSCTPGM FTKHIEDVHS BACU016037/1-1261 SLPLPGISRS G--RNSTRYP RGLCASTGDL YRKRSCTPGM FTKHIEDVHS 1051 1100 ENSP00000352413/1-1100 EPLFRKDFQQ INPPHRGPQA STLLAQGPRP HAPRYYVINE CDSYKKKHLN ENSBTAP00000053166/1-1089 E-LFRKDLQP IN---HGLGV SALVPHSPRS HALRYYLINE RDSQQKKHST ENSTTRP00000013810/1-1091 EPLFRKDLQQ ID---HGSRV SALVPRGHRS RAPRYYMVNE RDPHQENHST bmy_07520T0/1-1147 EPLFPKDLQQ ID---HGSRV SALVPRGRRS RAPRYYMVNE RDPHQKNHST BACU016037/1-1261 EPLFPKDLQQ ID---HGSRV SALVPRGRRS RAPRYYMVNE RDPHQKNHST 1101 1150 ENSP00000352413/1-1100 VWPERHFKID ASGDIVELYP RNVRQYASRV PRQPPSPQLS EEEEETPSRD ENSBTAP00000053166/1-1089 FWPERHFKID TSGDTVDMYP RNMRPCAPLA -----SPQLS EEEEEVPRRQ ENSTTRP00000013810/1-1091 FWPERRFKVD IFGDAVEMYP RNMQQCIPWA -----SPQLS EEEEEMQRRK bmy_07520T0/1-1147 FWPERRFKID IFGDAVEMYP RNMQQCMPWA -----SPQLS EEEEEMQRRK BACU016037/1-1261 FWPERRFKID IFGDPVEMYP RNMQQCMPWA -----SPQLS EEEEEMQRSK 1151 1200 ENSP00000352413/1-1100 WIKRSLPPRS LIDLRRAPHF YIGERSESQT RDPEHQGRVH YKSWNEDFEG ENSBTAP00000053166/1-1089 VSRRAFHPRS LTDLHGVHHF YVGESSESQA LTPELQRPTH YTSWNDGFEG ENSTTRP00000013810/1-1091 MSRRAFYPRS LTDLHGAPHF YVGRSLESQA LTPELQRRTH YKSWNDGIEG bmy_07520T0/1-1147 VSRRAFYPRS LTDLHGAPHF YVGKRLESQG LSPELQRWTH YKSWNDGVEG BACU016037/1-1261 ASRQAFYPRS LTDLHGAPHF YVGKSLESQG LTPELQRRTH YKSWNDGVEG 1201 1250 ENSP00000352413/1-1100 HLERPAYVPR KPRSRNFQYP QPPLKPRGKP RFEPSLTESD SVSAASSSDQ ENSBTAP00000053166/1-1089 QLDRPLYMHK KARSQNFQYP QHPLKPRVKA KFEPSVTESD FMSAASSRDQ ENSTTRP00000013810/1-1091 QLDRPMYVYK KPRYRNFQPP PHPLKPRVKG KFEPSVTESD SMSAASSSDQ bmy_07520T0/1-1147 QLDRPMYVHK KPRYRNFQHP QHPLKPRVKA KFEPSVTESD SMSAASSSDQ BACU016037/1-1261 QLDRPMYVHK KPRYRNFQHP QHPLKTRVKA KFEPSVTESD SMSAASSSDQ 1251 1300 ENSP00000352413/1-1100 QNSSADQYLQ VTHSQGRFPR SVGQPSRRKA KSGQELTVDL DDLICSDV ENSBTAP00000053166/1-1089 QNSGTNQYFQ VTHSQPKFPR SAGQFGRRKA ISRQELTAGL NDLICSNV ENSTTRP00000013810/1-1091 QNSSTDQCLQ VTRSQPKFPR SAGQFGRRKA MSRQELTTDL NDLICSNV bmy_07520T0/1-1147 QNSSTDQCLQ VTRSHPKFPR SAGQFGRRKA ISRQELTTDL NDLICSNV BACU016037/1-1261 QNSSTDQCLQ VTRSQPKFPR SAGQFGRRKA ISRQELTTDL NDLICSNV