KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:12 2014 Check: 00 .. Name: bmy_01643T0/1-944 Len: 1483 Check: 8065 Weight: 1.00 Name: BACU014702/1-1200 Len: 1483 Check: 2427 Weight: 1.00 Name: ENSP00000343158/1-1087 Len: 1483 Check: 8684 Weight: 1.00 Name: ENSTTRP00000006820/1-1091 Len: 1483 Check: 7869 Weight: 1.00 Name: ENSBTAP00000053167/1-1113 Len: 1483 Check: 2060 Weight: 1.00 // 1 50 bmy_01643T0/1-944 --ADCVRTFF YLTEKKENPG K--------- ---------- ---------- BACU014702/1-1200 MVSEEAAVLG FGDELLEDLG FEIGLMYKKH DS-------- ---------- ENSP00000343158/1-1087 MTTESGSDSE SKPDQEAEPQ EAAGAQG-RA GA-PVPEPPK EEQQQALEQF ENSTTRP00000006820/1-1091 MTTESGSDLE SKPEPEAEPQ E--GHAGAQG GA-PGAEPGS EEQPQALEQL ENSBTAP00000053167/1-1113 MTTESGSDSE SKPEQEAEPQ EAAGREGAQP GAQPGPEPAA EEQPQAPEQF 51 100 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ------NDLH BACU014702/1-1200 ----RALAVC KYFLTSKDSS TVVHAVKNGA LNQGAPDRDS EVRKQSQPWT ENSP00000343158/1-1087 AAAAAHSTPV RREVTDKEQE FAARAAKQLE YQQLEDDKLS Q-KSSSSKLS ENSTTRP00000006820/1-1091 EEAAAHSTPV RKEVTDKDQE F--GTAKQPE YQQFEDDKLS Q-KSSSSKLS ENSBTAP00000053167/1-1113 EEAAAHSTPV RKEVTDKDQE FAAGPAKQLE YQQLEDDKLS Q-KSSSSKLS 101 150 bmy_01643T0/1-944 RVQVSDLGSS SGL------- ---------- KRSRGQVLFD KVCEHLNLLE BACU014702/1-1200 CRPAGTPGGP HGL------L HVSDKAGE-H KRSRGQVLFD KVCEHLNLLE ENSP00000343158/1-1087 RSPLKIVKKP KSMQCKVILL DGSEYTCDVE KRSRGQVLFD KVCEHLNLLE ENSTTRP00000006820/1-1091 RSPLKIVKKP KSMQCKVILL DGSEYTCDVE KRSRGQVLFD KVCEHLNLLE ENSBTAP00000053167/1-1113 RSPLKIVKKP KSMQCKVILL DGSEYTCDVE KRSRGQVLFD KVCEHLNLLE 151 200 bmy_01643T0/1-944 KDYFGLTYQD AENQKNWLDP AKEIKKQIRS GAWHFSFNVK FYPPDPAQLS BACU014702/1-1200 KDYFGLTYQD AENQKNWLDP AKEIKKQIRS GAWHFSFNVK FYPPDPAQLS ENSP00000343158/1-1087 KDYFGLTYRD AENQKNWLDP AKEIKKQVRS GAWHFSFNVK FYPPDPAQLS ENSTTRP00000006820/1-1091 KDYFGLTYRD AESQKNWLDP AKEIKKQIRS GAWHFSFNVK FYPPDPSQLS ENSBTAP00000053167/1-1113 KDYFGLTYRD AENQKNWLDP AKEIKKQIRS GAWHFSFNVK FYPPDPAQLS 201 250 bmy_01643T0/1-944 EDITRYYLCL QLRDDIVSGR LPCSFVTLAT LGSYTVQSEL GDYDPDECGS BACU014702/1-1200 EDITRYYLCL QLRDDIVSGR LPCSFVTLAT LGSYTVQSEL GDYDPDECGS ENSP00000343158/1-1087 EDITRYYLCL QLRDDIVSGR LPCSFVTLAL LGSYTVQSEL GDYDPDECGS ENSTTRP00000006820/1-1091 EDITRYYLCL QLRDDIVSGR LPCSSVTLAT LGSYTVQSEL GDYDPDECGS ENSBTAP00000053167/1-1113 EDITRYYLCL QLRDDIVSGR LPCSFVTLAL LGSYTVQSEL GDYDPDECGS 251 300 bmy_01643T0/1-944 DYISEFRFAP NHTKELEDKV IELHKSHRGM TPAEAE-MYF LENAKKLSMY BACU014702/1-1200 DYISEFRFAP NHTKELEDKV IELHKSHRGM TPAEAE-MYF LENAKKLSMY ENSP00000343158/1-1087 DYISEFRFAP NHTKELEDKV IELHKSHRGM TPAEAE-MHF LENAKKLSMY ENSTTRP00000006820/1-1091 DYINEFRFAP NHTKELEDKV IELHKSHRGM TPAEADXXXX XXXXXXXXXX ENSBTAP00000053167/1-1113 DYISEFRFAP NHTKELEDKV IELHKSHRGM TPAEAE-MHF LENAKKLSMY 301 350 bmy_01643T0/1-944 GVDLHHAKDS EGVEIMLGVC ASGLLIYRDR LRINRFAWPK VLKISYKRNN BACU014702/1-1200 GVDLHHAKDS EGVEIMLGVC ASGLLIYRDR LRINRFAWPK VLKISYKRNN ENSP00000343158/1-1087 GVDLHHAKDS EGVEIMLGVC ASGLLIYRDR LRINRFAWPK VLKISYKRNN ENSTTRP00000006820/1-1091 XXXXXXXXDS EGVEIMLGVC ASGLLIYRDR LRINRFAWPK VLKISYKRSN ENSBTAP00000053167/1-1113 GVDLHHAKDS EGVDIMLGVC ASGLLIYRDR LRINRFAWPK VLKISYKRNN 351 400 bmy_01643T0/1-944 FYIKIRPGEF EQFESTIGFK LPNHRAAKRL WKVCVEHHTF FRLLLPEAPP BACU014702/1-1200 FYIKIRPGEF EQFESTIGFK LPNHRAAKRL WKVCVEHHTF FRLLLPEAPP ENSP00000343158/1-1087 FYIKIRPGEF EQFESTIGFK LPNHRAAKRL WKVCVEHHTF FRLLLPEAPP ENSTTRP00000006820/1-1091 FYIKIRPGEF EQFESTIGFK LPNHRAAKRL WKVCVEHHTF FRLLLPEAPP ENSBTAP00000053167/1-1113 FYIKIRPGEF EQFESTIGFK LPNHRAAKRL WKVCVEHHTF FRLLLPEAPP 401 450 bmy_01643T0/1-944 KKFLTLGSKF RYSGRTQAQT RRASALIDRP APYFERSSSK RYTMSRSLDG BACU014702/1-1200 KKFLTLGSKF RYSGRTQAQT RRASALIDRP APYFERSSSK RYTMSRSLDG ENSP00000343158/1-1087 KKFLTLGSKF RYSGRTQAQT RRASALIDRP APYFERSSSK RYTMSRSLDG ENSTTRP00000006820/1-1091 KKFLTLGSKF RYSGRTQAQT RRASALIDRP APYFERSSSK RYTMSRSLDG ENSBTAP00000053167/1-1113 KKFLTLGSKF RYSGRTQAQT RRASALIDRP APYFERSSSK RYTMSRSLDG 451 500 bmy_01643T0/1-944 ASVNENHEIY MKDSVSAAEV GTGQYITTKG ISQTNLITTV TPEKKAEEER BACU014702/1-1200 ASVNENHEIY MKDSVSAAEV GTGQYITTKG ISQTNLITTV TPEKKAEEER ENSP00000343158/1-1087 ---------- --------EV GTGQYATTKG ISQTNLITTV TPEKKAEEER ENSTTRP00000006820/1-1091 ---------- --------EV GTGQYMTTKG ISQTNLITTV TPEKKAEEER ENSBTAP00000053167/1-1113 ASVNENHEIY MKDSVSAAEV GTGQYITTKG MSQTNLITTV TPEKKAEEER 501 550 bmy_01643T0/1-944 DEEEDRRQKA EEATPVAAVR PEGK------ ---------- ---------- BACU014702/1-1200 DEEEDRRQKG EEATPVAAVR PEGK------ ---------- ---------- ENSP00000343158/1-1087 DEEEDKRRKG EEVTPISAIR HEGKSPGLGT DSCPLSPPST HCAPTSPTEL ENSTTRP00000006820/1-1091 GEEDDRRQKA EEATPVAAVR PEGKSPGLGT DSCPPSPPSA RSPPASPTGL ENSBTAP00000053167/1-1113 DEEEDRRKKA EEATPVAAVR HEGKSPGLGT DSCPPLPPSA HRPPASPTGL 551 600 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ---------- BACU014702/1-1200 ---------- ---------- ---------- ---------- ---------- ENSP00000343158/1-1087 RRRCKENDCK LPGYEPSR-A EHLPGEPALD SDGPGRPYLG DQDVAFSYRQ ENSTTRP00000006820/1-1091 RRRCKENGHP PPGVEPARDP GHLHGEPASD SDGRGKPCLG DHDVAFSCKQ ENSBTAP00000053167/1-1113 RRRCKENGQP PLGVELARDS RRQHGEPASD PDSRGKPCPG DHDVALGYKP 601 650 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ---------- BACU014702/1-1200 ---------- ----LPESFP SLLDDDGYLS FPSLSESNLL PQSLQHYLPI ENSP00000343158/1-1087 QTGKGTTLFS FSLQLPESFP SLLDDDGYLS FPNLSETNLL PQSLQHYLPI ENSTTRP00000006820/1-1091 RPGRGATLFS FSLQLPESFP SLLDDDGYLS FPNLSESHLL PQSLRHYLPI ENSBTAP00000053167/1-1113 QPGRGATLFS FSLQLPGSFP SLLDDDGYLS FPNLSESALL PQSLQHYLPI 651 700 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ---------- BACU014702/1-1200 RSPSLVPCVL FIFFFLLSAS FSVPYALTLS FPLALCLCCL EPKAASLSAS ENSP00000343158/1-1087 RSPSLVPCFL FIFFFLLSAS FSVPYALTLS FPLALCLCYL EPKAASLSAS ENSTTRP00000006820/1-1091 RSPSLVPCVL FIFFFLLSAS FSVPYALTLS FPLALCLCCL EPKAASLSAS ENSBTAP00000053167/1-1113 RSPSLVPCFL FIFFFLLSAS FSVPYALTLS FPLALCLCYL EPKAASLSAS 701 750 bmy_01643T0/1-944 ---------- --TDSERTDT AADGETTATE SDQEEDAELK AQNSLIKRIK BACU014702/1-1200 LDNDPSDSSE EETDSERTDT AADGETTATE NS-------- ----LIKRIK ENSP00000343158/1-1087 LDNDPSDSSE EETDSERTDT AADGETTATE SDQEEDAELK A--------- ENSTTRP00000006820/1-1091 LDNDPSDSSE EETDSERTDT AADGETTATE SDQEEDAELK A--------- ENSBTAP00000053167/1-1113 LDNDPSDSSE EETDSERTDT AADGETTATE SDQEEDAELK A--------- 751 800 bmy_01643T0/1-944 GENVYVKHSN LMLEELDKTQ DDLMKHQTNI SELKRTFLET STDTAITNEW BACU014702/1-1200 GENVYVKHSN LMLEELDKTQ DDLMKHQTNI SELKRTFLET STDTAITNEW ENSP00000343158/1-1087 ---------- ---QELEKTQ DDLMKHQTNI SELKRTFLET STDTAVTNEW ENSTTRP00000006820/1-1091 ---------- ---QELDKTQ DDLMKHQTNI SELKRTFLET STDTAITNEW ENSBTAP00000053167/1-1113 ---------- ---QELDKTQ DDLMKHQTNI SELKRTFLET STDTAITNEW 801 850 bmy_01643T0/1-944 EKRLSTSPVR LAARQEEAPM IEPLVPEETK EEREISEKVL FLHQGSSPFF BACU014702/1-1200 EKRLSTSPVR LAARQEEAPM IEPLVPEE-- ---------- ---------- ENSP00000343158/1-1087 EKRLSTSPVR LAARQEDAPM IEPLVPEE-- ---------- ---------- ENSTTRP00000006820/1-1091 EKRLSTSPVR LAARQEEAPM IEPLVPEE-- ---------- ---------- ENSBTAP00000053167/1-1113 EKRLSTSPVR LAARQEDAPM IEPLVPEE-- ---------- ---------- 851 900 bmy_01643T0/1-944 ESQVYHFCLD SGEGNREFCY YFSYPLAIIS LWLLLLAECD KENSGRRLCG BACU014702/1-1200 ---------- ---------- ---------- ---------- ---------- ENSP00000343158/1-1087 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006820/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053167/1-1113 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_01643T0/1-944 YLSSNHFPEN CPIDPREICG NAGTFFVRTT DMKYSVLFHM ENCLFYVHTT BACU014702/1-1200 ---------- ---------- ---------- ---------- ---------- ENSP00000343158/1-1087 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006820/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053167/1-1113 ---------- ---------- ---------- ---------- ---------- 951 1000 bmy_01643T0/1-944 SKMLFNLDIE NDQTFSIRSN IAFAKFTTKG TEDWVIVDKI PTEVVDGDSK BACU014702/1-1200 ---------- ---------- ---------G TEDWVIVDKI PTEVVDGDSK ENSP00000343158/1-1087 ---------- ---------- ---------- ---------- -TKQSSGE-- ENSTTRP00000006820/1-1091 ---------- ---------- ---------- ---------- -TKQSSGE-- ENSBTAP00000053167/1-1113 ---------- ---------- ---------- ---------- -TKQTSGE-- 1001 1050 bmy_01643T0/1-944 KTVTYKVMTV SGRTDDIRAD LLGSSATEVQ SFEDLAREMH LKEENTQKIY BACU014702/1-1200 KTVTYKVVTT SGRTDDIPTD LLGSSATEVQ SFEDLAREMH LKEENKQKIY ENSP00000343158/1-1087 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006820/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053167/1-1113 ---------- ---------- ---------- ---------- ---------- 1051 1100 bmy_01643T0/1-944 TLGKSYDTVS GKIVTMTGKV KEGEKVVSPS PLEPGLAESV KTPPVLAEFE BACU014702/1-1200 TLGKSYDTVS GKIVTMTGKV KEGEKVLSPS PLEPGLAESV KTPPVLAEFE ENSP00000343158/1-1087 ---------- --------KL MDGSEIFS-- -----LLESA RKPT-----E ENSTTRP00000006820/1-1091 ---------- --------KL MDGSEIFS-- -----LLESA RKPT-----E ENSBTAP00000053167/1-1113 ---------- --------KL MDGSEILS-- -----LLESA RKPT-----E 1101 1150 bmy_01643T0/1-944 VLGALTEDRT RRGPEVHTPK RRLSESLAPI REAESRQQSP EDDALEKSHA BACU014702/1-1200 VLGVLTEDRT RRGPEVHTPK RRPSESLAPI REAESRQQSP EDDALEKRHA ENSP00000343158/1-1087 FIGG------ ---------- ---------- ---------- ---------- ENSTTRP00000006820/1-1091 FIGG------ ---------- ---------- ---------- ---------- ENSBTAP00000053167/1-1113 FIGA------ ---------- ---------- ---------- ---------- 1151 1200 bmy_01643T0/1-944 PGRDASLEGE RLGRAEP--E AEALEVGPFG PHGKSLSEGR YSQEPAVTVA BACU014702/1-1200 PGRDASLEGE RLGRAEPENE AEALKVGPSG PHGKSLSEWI YSQEPAVTVA ENSP00000343158/1-1087 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006820/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053167/1-1113 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_01643T0/1-944 TTRYVVTESA TSQVVVT--- ---------- ---------- ---------- BACU014702/1-1200 TTRYVVTESA TSQVVETETK TESGKIEMET TQRPQPLSTE KVVQEMALME ENSP00000343158/1-1087 -----VTSTS QSWVQKMETK TESSGIETEP TVHHLPLSTE KVVQETVLVE ENSTTRP00000006820/1-1091 -----VTSTS QSWVQKMETK MESGKIETET TQHPQPLSTQ KVVQETALVE ENSBTAP00000053167/1-1113 -----VTSTS QSWVQKTETK MESSDIETET AQQPQPPSVE KVVQETVLVE 1251 1300 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ---------- BACU014702/1-1200 ERHVMNVHAS GDASYAAGDD MDAVTQAASA DASDVKGKEI SALTEGAKEE ENSP00000343158/1-1087 ERRV--VHAS GDASYSAGDS GDAAAQPA-- -FTGIKGKEG SALTEGAKEE ENSTTRP00000006820/1-1091 ERQVMNAHAS GDASYAAGDD MDAVTQAASA DVSDVKGKEV SALTEGAKEE ENSBTAP00000053167/1-1113 ERHVMNVHAS GDACYVAGDD ADTATQAAPA DASGAKEKEG SALTEGAKEE 1301 1350 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- ---------- BACU014702/1-1200 KGEVADKAVL EQGEMAAASQ EPEEEQSAAI HVSEALEQKP HFESSTVKTE ENSP00000343158/1-1087 GGEEVAKAVL EQEETAAASR ERQEEQSAAI HISETLEQKP HFESSTVKTE ENSTTRP00000006820/1-1091 KGEVADKTVL EQGEMAAASQ EPEEEQSAAI HVSEASEEKP HFESSTVKTE ENSBTAP00000053167/1-1113 KGEVADKVVV EQDEMATASC EPEEEQTAAV HVSETLEQKP HFESSTVKTE 1351 1400 bmy_01643T0/1-944 ---------- ---------- ---------- ---------- GAAFGPPFPI BACU014702/1-1200 TISFDSVSPG EVKLEISTKE VPVVHTETKT ITYESSQVDL GADLEPGVLM ENSP00000343158/1-1087 TISFGSVSPG GVKLEISTKE VPVVHTETKT ITYESSQVDP GTDLEPGVLM ENSTTRP00000006820/1-1091 TVSFGSVSPG GVKLEISTKE VPVVHTETKT ITYESSQVDL GADLEPGVLM ENSBTAP00000053167/1-1113 TISFGSVSPG EVKLEISTKE VPVVHTETKT ITYESSQVDL GADLEPGVLM 1401 1450 bmy_01643T0/1-944 PA-------- ---------- ---------- ---------- ---------- BACU014702/1-1200 SAQTITSETT STTTTTHITK TVKGGISETR IEKRIVITGD ADIDHDQALA ENSP00000343158/1-1087 SAQTITSETT STTTTTHITK TVKGGISETR IEKRIVITGD ADIDHDQALA ENSTTRP00000006820/1-1091 SAQTITSETT GTTTTTHITK TVKGGISETR IEKRIVITGD ADIDHDQALA ENSBTAP00000053167/1-1113 SAQTITSETT STTTTTHITK TVKGGISETR IEKRIVITGD ADIDHDQALA 1451 1500 bmy_01643T0/1-944 ---------- ---------- ---------- --- BACU014702/1-1200 QAIKEAREQH PDMSVTKVVV HKETEITPED GED ENSP00000343158/1-1087 QAIKEAKEQH PDMSVTKVVV HKETEITPED GED ENSTTRP00000006820/1-1091 QAIKEAKEQH PDMSVTKVVV HKETEITPED GED ENSBTAP00000053167/1-1113 QAIKEAKEQH PDMSVTKVVV HKETEISPED GED