KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:13 2014 Check: 00 .. Name: ENSP00000264144/1-1193 Len: 1196 Check: 7077 Weight: 1.00 Name: ENSBTAP00000053169/1-1193 Len: 1196 Check: 5919 Weight: 1.00 Name: ENSTTRP00000007273/1-1190 Len: 1196 Check: 1499 Weight: 1.00 Name: bmy_10505T0/1-1149 Len: 1196 Check: 6468 Weight: 1.00 Name: BACU005804/1-1191 Len: 1196 Check: 9534 Weight: 1.00 // 1 50 ENSP00000264144/1-1193 MPALWLGCCL CFSLLLPAAR ATSRREVCDC NGKSRQCIFD RELHRQTGNG ENSBTAP00000053169/1-1193 MPALWLSGCL CLSLLLPAAR ANSRTPVCDC NGKSRQCIFD QELHRLTGNG ENSTTRP00000007273/1-1190 MPALWLSCCL CFSLLLPAAR ANSRTPVCDC SGKSRQCVFD EELHRLTGNG bmy_10505T0/1-1149 ------MSFF ALTL------ ------VCDC SGKSRQCVFD EELHRQTGNG BACU005804/1-1191 MPALWLSCCF CFSLLLPAAR ANSRTPVCDC SGKSRQCVFD EELHRQTGNG 51 100 ENSP00000264144/1-1193 FRCLNCNDNT DGIHCEKCKN GFYRHRERDR CLPCNCNSKG SLSARCDNSG ENSBTAP00000053169/1-1193 FRCLHCSDNT GGIHCERCKE GFYRHRERDR CLPCNCNSKG SLSPRCDNTG ENSTTRP00000007273/1-1190 FRCLHCSDNT GGVHCQRCKE GFYRQRDRDR CLPCNCNSKG SLSARCDNAG bmy_10505T0/1-1149 FRCLHCSDNT GGXHCQRCKE GFYRQRDRDR CLPCNCNSKG SLSARCDNAG BACU005804/1-1191 FRCLHCSDNT GGIHCQRCKE GFYRQRDRDR CLPCNCNSKG SLSARCDNAG 101 150 ENSP00000264144/1-1193 RCSCKPGVTG ARCDRCLPGF HMLTDAGCTQ DQRLLDSKCD CDPAGIAGPC ENSBTAP00000053169/1-1193 RCSCKPGVTG DRCDRCLPGF HTLTDAGCTQ DRKLLDSKCD CDPAGIVGPC ENSTTRP00000007273/1-1190 RCSCKPGVTG DRCDRCLPGF HTLTEAGCTQ DQRLLDSKCD CDPAGISGPC bmy_10505T0/1-1149 RCSCKPGVTG DRCDRCLPGF HTLTEAGCTQ DQRLLDSKCD CDPAGISGPC BACU005804/1-1191 RCSCKPGVTG DRCDRCLPGF HTLTEAGCTQ DQRLLDSKCD CDPAGISGPC 151 200 ENSP00000264144/1-1193 DAGRCVCKPA VTGERCDRCR SGYYNLDGGN PEGCTQCFCY GHSASCRSSA ENSBTAP00000053169/1-1193 DTGRCVCKPA VTGERCDRCR PGYYHLDGRN PEGCTQCFCY GHSASCQSSG ENSTTRP00000007273/1-1190 DTGRCVCKSA VTGGRCDRCR PGYYHLDGGN PEGCTQCFCY GHSASCRSSG bmy_10505T0/1-1149 DTGRCVCKPA VTGGRCDRCR PGYYHLDGGN PEGCTQCFCY GHSASCRSSG BACU005804/1-1191 DTGHCVCKPA VTGGRCDRCR PGYYHLDGGN PEGCTQCFCY GHSASFQSSG 201 250 ENSP00000264144/1-1193 EYSVHKITST FHQDVDGWKA VQRNGSPAKL QWSQRHQDVF SSAQRLDPVY ENSBTAP00000053169/1-1193 DYSVHKITST FHQDVDGWKA VQRNGFPAKL QWSQRHQDVF SSARRSDPVY ENSTTRP00000007273/1-1190 DYSVHKITST FHQDVDGWKA VQRNGSPAKL QWSQRHRDVF SSARQSDPVY bmy_10505T0/1-1149 DYSVHKITST FHQDVDGWKA VQRNGSPAKL QWSQRHQDVF SSARQSDPVY BACU005804/1-1191 DYSVHKITST FYQDVDGWKA VQRNGSPAKL QWSQRHQDVF SSARQSDPVY 251 300 ENSP00000264144/1-1193 FVAPAKFLGN QQVSYGQSLS FDYRVDRGGR HPSAHDVILE GAGLRITAPL ENSBTAP00000053169/1-1193 FVAPAKFLGN QQVSYGQSLS FDYRVDRGGR HPSAHDVILE GAGLQITAPL ENSTTRP00000007273/1-1190 FIAPAKFLGN QQVSYGQSLS FDYRVDRGGR HPSAHDVILE GAGLRITAPL bmy_10505T0/1-1149 FIAPAKFLGN QQVSYGQSLS FDYRVDRRGR HPSAHDVILE GAGLWITAPL BACU005804/1-1191 FIAPAKFLGN QQVSYGQSLS FDYRVDRGGR HPSAHDVILE GVGLRISAPL 301 350 ENSP00000264144/1-1193 MPLGKTLPCG LTKTYTFRLN EHPSNNWSPQ LSYFEYRRLL RNLTALRIRA ENSBTAP00000053169/1-1193 MPRDKTLPCG ITKTYTFRLN EHPSSNWRPK LSYFEYRRLL RNLTALRIRA ENSTTRP00000007273/1-1190 IPPGKTLPCG VTKTYTFRLN ENPSSNWSPQ LSYFEYRRLL RNLTALRIRA bmy_10505T0/1-1149 IPPGKTLPCG VTKTYTFRLN ENPSSNWSPQ LSYFEYRRLL RNLTALRIRA BACU005804/1-1191 IPPGKTLPCG VTKTYTFRLN ENPSSNWSPQ LSYFEYRRLL RNLTALRIRA 351 400 ENSP00000264144/1-1193 TYGEYSTGYI DNVTLISARP VSGAPAPWVE QCICPVGYKG QFCQDCASGY ENSBTAP00000053169/1-1193 TYGEYSTGYL DNVTLISARP VSGTPAPWVE QCVCPVGYKG QFCHECASGY ENSTTRP00000007273/1-1190 TYGEYSTGYL DNVTLISARP ISGAPAPWVE QCVCPVGYKG QFCQECASGY bmy_10505T0/1-1149 TYGEYSTGYL DNVTLISARP ISGDPALWVE QCVCPVGYKG QFCQECASGY BACU005804/1-1191 TYGEYSTGYL DNVTLISARP ISGDPALWVE QCVCPVGYKG QFCQECASGY 401 450 ENSP00000264144/1-1193 KRDSARLGPF GTCIPCNCQG GGACDPDTGD CYSGDENPDI ECADCPIGFY ENSBTAP00000053169/1-1193 KRDSARLGPF GTCIPCNCQG GGACDPDTGD CYSGDENPDI ECEDCPIGFY ENSTTRP00000007273/1-1190 KRDSARLGPF GTCIPCNCQG GGACDPDTGD CYSGDENPDI ECADCPIGFY bmy_10505T0/1-1149 KRDSARLGPF GTCIPCNCQG GGACDPDTGD CYSGDENPDI ECADCPIGFY BACU005804/1-1191 KRDSARLGPF GTCIPCNCQG GGACDPDTGD CYSGDENPDI ECADCPIGFY 451 500 ENSP00000264144/1-1193 NDPHDPRSCK PCPCHNGFSC SVMPETEEVV CNNCPPGVTG ARCELCADGY ENSBTAP00000053169/1-1193 NDPHDPGSCK PCPCRNGFSC SVMPETEEVV CNNCPHGITG ARCELCADGY ENSTTRP00000007273/1-1190 NDPRDPRSCK PCPCRNGFSC SVMPETEEVV CNNCPHGVTG ARCELCADGY bmy_10505T0/1-1149 NDPRDPRSCK PCPCRNGLSC SVMPETEEVV CNNCPHGVTG ARCELCADGY BACU005804/1-1191 NDPRDPRSCK PCPCRNGFSC SVMPETEEVV CNNCPHGVTG ARCELCADGY 501 550 ENSP00000264144/1-1193 FGDPFGEHGP VRPCQPCQCN NNVDPSASGN CDRLTGRCLK CIHNTAGIYC ENSBTAP00000053169/1-1193 FGDPFGEHGP VRPCQPCQCS DNVDPSAPGN CDRLTGRCLK CLHNTTGAHC ENSTTRP00000007273/1-1190 FGDPSGEHGP VRPCQPCQCN NNVDPSASGN CDRLTGRCLK CLHGTAGAHC bmy_10505T0/1-1149 FGDPFGEHGP VRPCQPCQCN NNVDPRASGN CDRLTGRCLK CLHGTAGTHC BACU005804/1-1191 FGDPFGEHGP VRPCQPCQCN NNVDPRASGN CDRLTGRCLK YLHGTAGTHC 551 600 ENSP00000264144/1-1193 DQCKAGYFGD PLAPNPADKC RACNCNPMGS EPVGCRSDGT CVCKPGFGGP ENSBTAP00000053169/1-1193 DQCKAGYYGD PLAPNPADKC RACNCNPMGS EPVECRSDGS CVCKPGFDGL ENSTTRP00000007273/1-1190 DQCKAGYFGD PLAPNPMDKC RACNCNPVGS EPVECRSDGS CVCKPGFGGL bmy_10505T0/1-1149 DQCKAGYFGD PLAPNPVDKC RACNCNPVGS EPVECRSDGS CVCKPGFGGL BACU005804/1-1191 DQCKAGYFGD PLAPNPVDKC RACNCNPVGS EPVECRSDGS CVCKPGFGGL 601 650 ENSP00000264144/1-1193 NCEHGAFS-C PACYNQVKIQ MDQFMQQLQR MEALISKAQG GDGVVPDTEL ENSBTAP00000053169/1-1193 NCDHAALTNC PACYNQVKSQ MDQFMQQLES LETLLSKAQA GGGAVPDTEL ENSTTRP00000007273/1-1190 NCEHAALTIC PACYNQVKIQ MDQFMQQLQN LETLISKAQG DGGAVPNTEL bmy_10505T0/1-1149 NCEHAALTNC PACYNQVKIQ MDQFMQQLQS LETMISKAQG GGGTVPNTEL BACU005804/1-1191 NCEHAALTNC PACYNQVKIQ MDQFMQQLQS LETMISKAQA GGGTVPNTEL 651 700 ENSP00000264144/1-1193 EGRMQQAEQA LQDILRDAQI SEGASRSLGL QLAKVRSQEN SYQSRLDDLK ENSBTAP00000053169/1-1193 EGRMQQAEQA LQDLLREAQI SEGAIRSLNL QLAKARSQEN SYQTRLDDLK ENSTTRP00000007273/1-1190 EGRMQWVEQT LQDILREAQI SEGAIRSLNL QLAKARSQEN SYRNRLDDLK bmy_10505T0/1-1149 EGRMQWVEQT LRDILREAQI SEGAIRSLSL QLAKARSQEN SYRNRLDDLK BACU005804/1-1191 EGRMQWVEQT LRDILREAQI SEGAIRSLNL QLAKARSQEN SYRNRLDDLK 701 750 ENSP00000264144/1-1193 MTVERVRALG SQYQNRVRDT HRLITQMQLS LAESEASLGN TNIPASDHYV ENSBTAP00000053169/1-1193 MTVERLRTLG SQHQDRVQDT RRLITQMRLS LEESEAALRN TNIPPSEHYT ENSTTRP00000007273/1-1190 MTVERVRALG SQHQNRVQDT HRLITQMRLS LEESEAALRN TDVPPSEDYM bmy_10505T0/1-1149 MTVERVRALG SQHQNRVQDT HRLITQMRLS LEKSEAALRN TDVPPSEHYM BACU005804/1-1191 MTVERVRALG SQHQNRVQDT HRLITQMRLS LEESEAALRN TDVPSSEHYM 751 800 ENSP00000264144/1-1193 GPNGFKSLAQ EATRLAESHV ESASNMEQLT RETEDYSKQA LSLVRKALHE ENSBTAP00000053169/1-1193 GPNGFKSLAQ EATRLADSHV ESANNMEQLV RETEDYSKQA LTLARKAAAE ENSTTRP00000007273/1-1190 GPNGFKSLAL DAARLADSHV ESANNMEQLA RETEDYSEQA LSLARKALSE bmy_10505T0/1-1149 GPNGFKSLAQ EATRLADSHV ESANNMEQLA RETEDYSKQA LSLARKALSE BACU005804/1-1191 GPNGFKSLAQ EATRLADSHV ESANNMEQLA RETEDFSKQA LSLARKALSE 801 850 ENSP00000264144/1-1193 GVGSGSGSPD GAVVQGLVEK LEKTKSLAQQ LTREATQAEI EADRSYQHSL ENSBTAP00000053169/1-1193 GGSS--GSLR GSVVQELGGK LEKIKSLAQQ LSREATQIDN EADTSYQHSL ENSTTRP00000007273/1-1190 GGGS--GTLD GSVVQGLVGK LEKTKSLAQQ LSREATQTDM EADTSYQHSL bmy_10505T0/1-1149 GGGS--GRLD GAVVQGLVGK LEKTKSLAQQ LSREVSQTDI EADRSYQHSL BACU005804/1-1191 GGGS--GRLD GSVVQGLVGK LEKTKSLAQQ LSREVTQTDI EADRSYQHSL 851 900 ENSP00000264144/1-1193 RLLDSVSRLQ GVSDQSFQVE EAKRIKQKAD SLSSLVTRHM DEFKRTQKNL ENSBTAP00000053169/1-1193 RLLSSATQLQ GVNDQSFQV- EAKKIRQKAD SLSSLVTKRM DEFKRVQSSL ENSTTRP00000007273/1-1190 RLLNSASQLQ GVNDQSFQV- ETKRIRQKAD SVSSLVTKRV DEFKRVQSNL bmy_10505T0/1-1149 RLLDSASQLQ GINDQSFQV- ETKRIRQKAD SVSSLVTKRV DEFKR----- BACU005804/1-1191 RLLDSASQLQ GVNDQSFQV- ETKRIRQKAD SVSSLVTKRV DEFKRVQSNL 901 950 ENSP00000264144/1-1193 GNWKEEAQQL LQNGKSGREK SDQLLSRANL AKSRAQEALS MGNATFYEVE ENSBTAP00000053169/1-1193 GNWEEETQKL LQDGKNERQK SDQLLSRANL AKSRAQEALS MGNATFYEVE ENSTTRP00000007273/1-1190 GNWEEETRKL LQNGKNGRQK SDQLLSRANL AKSRAQEALS MGNATFYEVE bmy_10505T0/1-1149 ---------- ---------K SDQLLSRANL AKSRAQEALS MGNATFYEVE BACU005804/1-1191 GNWEEETRKL LQNGKNGRQK SNQLLSRANL AKSRAQEALS MGNATFYEVE 951 1000 ENSP00000264144/1-1193 SILKNLREFD LQVDNRKAEA EEAMKRLSYI SQKVSDASDK TQQAERALGS ENSBTAP00000053169/1-1193 NILKNLREFD LQVEDRKAEA EEAMKRLSYI SQKVADASDK TRRAETALGG ENSTTRP00000007273/1-1190 NILKNLREFD LQVEDRKAEA EEAMKRLSYI SQKVADASDK TKQAETALGD bmy_10505T0/1-1149 NILKNLREFD LQVEDRKAEA EEAMKRLSYI SQKVADASDK TKRAETALGG BACU005804/1-1191 NILKNLREFD LQVEDRKAEA EEAMKRLSYI SQKVADASDK TKRAETALGG 1001 1050 ENSP00000264144/1-1193 AAADAQRAKN GAGEALEISS EIEQEIGSLN LEANVTADGA LAMEKGLASL ENSBTAP00000053169/1-1193 AATDAQRAKT AAGEALKIAG KIEQEIGSLN VEANVTADGA LAMEKGLATL ENSTTRP00000007273/1-1190 AAADAQRAKN AAGEALEITG SIEQEMGSLN LEANVTADGA LAMEKGLATL bmy_10505T0/1-1149 AAADAQRAKN AAGEALEITG NIEQEMGSLN LEANVTADGA LAMEKGLATL BACU005804/1-1191 AAADAQRAKN AAGEALEITG NIEQEMGSLN LEANVTADGA LAMEKGLATL 1051 1100 ENSP00000264144/1-1193 KSEMREVEGE LERKELEFDT NMDAVQMVIT EAQKVDTRAK NAGVTIQDTL ENSBTAP00000053169/1-1193 KSEMRKVEGE LARKEREFDV DMDTVQMVIT EAQRVDSRAK NAGVTIQDTL ENSTTRP00000007273/1-1190 KSEMREVEGE LARKEREFGT STDAVQTVIT EAQRVDNRAR NAGVTIQDTL bmy_10505T0/1-1149 KSKMREVEGE LARKEREFGT DXDAVQTVIT EAQRVDNRAK NAGVTIQDTL BACU005804/1-1191 KSEMREVEGE LARKEREFGT DTDAVQTVIA EAQRVDNRAK NAGVTIQDTL 1101 1150 ENSP00000264144/1-1193 NTLDGLLHL- -MDQPLSVDE EGLVLLEQKL SRAKTQINSQ LRPMMSELEE ENSBTAP00000053169/1-1193 NTLDGILHLI EIDQPGSVDE EGLILLEQKL FRAKTQINSQ LRPLMSELEE ENSTTRP00000007273/1-1190 NMLDGILHL- -IXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10505T0/1-1149 NTLDGILHL- -IDQPGSMDE EGLILLEQKL FRAKAQINSQ LRPLMSKLEE BACU005804/1-1191 NTLDGILHL- -IDQPGSMDE EGLILLEQKL FRAKAQINSQ LRPLMSKLEE 1151 1200 ENSP00000264144/1-1193 RARQQRGHLH LLETSIDGIL ADVKNLENIR DNLPPGCYNT QALEQQ ENSBTAP00000053169/1-1193 RVRWQRGHLH SLETSIDGIL ADVKNLENIR DNLPPGCYNT QALEQH ENSTTRP00000007273/1-1190 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXPPGCYNT QA-EQH bmy_10505T0/1-1149 RASSQRGHLR SLETSIDGIL ADVKNLENIR DNLPPGCYNT QALEQH BACU005804/1-1191 RASSQRGHLR SLETSIDGIL ADVKNLENIR DNLPPGCYNT QALEQH