KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:14 2014 Check: 00 .. Name: ENSP00000263265/1-779 Len: 789 Check: 8692 Weight: 1.00 Name: ENSBTAP00000053170/1-783 Len: 789 Check: 2156 Weight: 1.00 Name: ENSTTRP00000001172/1-777 Len: 789 Check: 4171 Weight: 1.00 Name: bmy_06412T0/1-712 Len: 789 Check: 4518 Weight: 1.00 Name: BACU002193/1-781 Len: 789 Check: 8588 Weight: 1.00 // 1 50 ENSP00000263265/1-779 MEGSRPRSSL SLASSASTIS SLSSLSPKKP TRAVNKIHAF GKRGNALRRD ENSBTAP00000053170/1-783 MEDGRPRSSL SLASSASTIS SLSGLSTKKS TRAVSKVHAF GKRGNALRRD ENSTTRP00000001172/1-777 MEEGRPRSSL SLASSASTIS SLGSLSTKKS TRAVSKVHAF GKRGNALRRD bmy_06412T0/1-712 MEEGRPRSSL SLASSASTIS SLGSLSTKKS TRAVSKVHAF GKRGNALRRD BACU002193/1-781 MEEGRPRSSL SLASSASTIS SLGSLSTKKS TRAVSKVHAF GKRGNALRRD 51 100 ENSP00000263265/1-779 PNLPVHIRGW LHKQDSSGLR LWKRRWFVLS GHCLFYYKDS REESVLGSVL ENSBTAP00000053170/1-783 PNLPVHIRGW LHKQDSSGLR LWKRRWFVLS GHCLFYYKDS REESVLGSVL ENSTTRP00000001172/1-777 PNLPVHIRGW LHKQXXXXXX XXXXXXXXXX XXXXXXXXXS REESVLGSVL bmy_06412T0/1-712 PNLPVHIRGW LHKQDSSGLR LWKRRWFVLS GHCLFYYKDS REESVLGSVL BACU002193/1-781 PNLPVHIRGW LHKQDSSGLR LWKRRWFVLS GHCLFYYKDS REESVLGSVL 101 150 ENSP00000263265/1-779 LPSYNIRPDG PGAPRGRRFT FTAEHPGMRT YVLAADTLED LRGWLRALGR ENSBTAP00000053170/1-783 LPSYIIRPDG PGAPRGRRFT FTAEHPGMRT YVLAADTLED LRGWLRALGR ENSTTRP00000001172/1-777 LPSYSIRPDG PGAPRGRRFT FTAEHPGMRT YVLAADTLED LRGWLRALGR bmy_06412T0/1-712 LPSYSIRPDG PGAPRGRRFT FTAEHPGMRT YVLAADTLED LRGWLRALGR BACU002193/1-781 LPSYSIRPDG PGAPRGRRFT FTAEHPGMRT YVLAADTLED LRGWLRALGR 151 200 ENSP00000263265/1-779 ASRAEGDDYG QPRSPARPQP GEGPGGPGGP PEVSRG-EEG RISESPEVTR ENSBTAP00000053170/1-783 ASRAEGDDCG QPRSSARPQT GEGPGGPGGP PEVNRGTEEG RGSESPEVAR ENSTTRP00000001172/1-777 ASRAEGDDCG QPRSSARPQT GEGPGGPGGP PEVSRG-EEG CGSESPEVAR bmy_06412T0/1-712 ASRAEGDDCG QPRLSARPQT GEGPGGPGGP PEVSRG-EEG RGSESPEVAR BACU002193/1-781 ASRAEGDDCG QPRLSARPQT GEGPGGPGGP PEVSRG-EEG RGSESPEVAR 201 250 ENSP00000263265/1-779 LSRGRGRPRL LTPSPTTDLH SGLQMRRARS PDLFTPLSRP PSPLSLPRPR ENSBTAP00000053170/1-783 LSRGRGRPGL LTPSPTADLQ SGPRIRRTRS PDLFTPLSRP PSPPSLPRPR ENSTTRP00000001172/1-777 LSRGRGR--L LTPSPMADLQ SGPRIRRTRS PDLFTPFSRP PSPLSLPRPR bmy_06412T0/1-712 LSRGRGR--L LTPSPMADLQ SGPRIRRTRS PDLFTPFSRS PSPLSLPRPR BACU002193/1-781 LSRGRGR--L LTPSPMADLQ SGPRIRRTRS PDLFTPFSRS PSPLSLPRPR 251 300 ENSP00000263265/1-779 SAPARRPPAP SGDTAPPARP HTPLSRIDVR PPLDWGPQRQ TLSRPPTPRR ENSBTAP00000053170/1-783 SAPARRPPPS SGDAAPSARP HTPLSRIDVR PPLDWGLQRQ TLSRPPTPRR ENSTTRP00000001172/1-777 SAPARRPPPS SGDTAPSARP HTPLSRIDVR PPLDWAPQRQ TLSRPPTPRR bmy_06412T0/1-712 SAPARRPPLS SGDTAPSARP HTPLSRIDVR PPLDWGPQRQ TLSRXPTPRR BACU002193/1-781 SAPARRPPLS SGDTAPSARP HTPLSRIDVR PPLDWGPQRQ TLSRPPTPRR 301 350 ENSP00000263265/1-779 GPPSEAGGGK PPRSPQHWSQ EPRTQ----A HSGSPTYLQL PPRPPGTRAS ENSBTAP00000053170/1-783 GPSSEARGGR PPRSPQHWSQ EARTP----A HSGTSTYLQL PPRPPGTRAS ENSTTRP00000001172/1-777 GPSSEAGGGR DPRSPQHWSQ EARTP----A PSGSSTYLQL PPRPPGTRAS bmy_06412T0/1-712 GPSSEAGGGR DPRSPQHWSQ EARTPYSSQA PSGSSTYLQL PPRPPGTRAS BACU002193/1-781 GPSSEAGGGR DPRSPQHWSQ EARTPYSSQA PSGSSTYLQL PPRPPGTRAS 351 400 ENSP00000263265/1-779 MVLLPGPPLE STFHQSLETD TLLTKLCGQD RLLRRLQEEI DQKQEEKEQL ENSBTAP00000053170/1-783 MVILPGPPLD STFHQSLETD TLLTKLCGQD RLLRRLQEEI DQRQEEKEQL ENSTTRP00000001172/1-777 MVLLPGPPLD STFHQSLETD TLLTKLCGQD RLLRRLQEEI DQKQEEKEQL bmy_06412T0/1-712 MVLLPGPPLD STFHQSLETD TLLTKLCGQD RLLRRLQEEI DQRQEEKEQL BACU002193/1-781 MVLLPGPPLD STFHQSLETD TLLTKLCGQD RLLRRLQEEI DQRQEEKEQL 401 450 ENSP00000263265/1-779 EAALELTRQQ LGQATREAGA PGRAWGRQRL LQDRLVSVRA TLCHLTQ--- ENSBTAP00000053170/1-783 EAALELTRQQ LGQTTREAAA PGRAWGHQRL LQDRLVSVRA TLCHLTQGPE ENSTTRP00000001172/1-777 EAALELTRQQ LGQTTREAAA PGRAWGRQRL LQDRLVSVRA ALCHLTQ--- bmy_06412T0/1-712 EAALELTRQQ LGQTTREAAA PGRAWGRQRL LQDRLVSVRA ALCHLTQ--- BACU002193/1-781 EAALELTRQQ LGQTTREAAA PGRAWGRQRL LQDRLVSVRA ALCHLTQ--- 451 500 ENSP00000263265/1-779 ERERVWDTYS GLEQELGTLR ETLEYLLHLG SPQDRVSAQQ QLWMVEDTLA ENSBTAP00000053170/1-783 ERERVWDTYS SLERELGTLR ETLEYLLHLG SPQDRASAQQ QLWMVEDTLA ENSTTRP00000001172/1-777 ERERVWDTYN SLEQELSTLR ETLEYLLHLG SPQDRASAQQ QLWMVEDTLA bmy_06412T0/1-712 ERERVWDTYN SLEQELSTLR ETLEYLLHLG SPQDRASAQQ QLWMVEDTLA BACU002193/1-781 ERERVWDTYN SLEQELSTLR ETLEYLLHLG SPQDRASAQQ QLWMVEDTLA 501 550 ENSP00000263265/1-779 GLGGPQKPPP HTEPDSPSPV LQGEESSERE SLPESLELSS PRSPETDWGR ENSBTAP00000053170/1-783 GLGGPQKPPS NTEPDSPSPA LQGEESSERE SLTESLELSS SRSPEVDWGR ENSTTRP00000001172/1-777 GLGGPQKPPH HTDPDSPSPA LQGKESSERE SLPESLELSL PRSPEADWGR bmy_06412T0/1-712 GLGGPQKPPH HTDPDSPSPA LQGEESLERE SLPESLELSL PRSPEADWGR BACU002193/1-781 GLGGPQKPPH HTDPDSPSPA LQGEESLERE SLPESLELSL PRSPEADWGR 551 600 ENSP00000263265/1-779 PPGGDKDLAS PHLGLGSPRV SRASSPEGRH LPSPQLGTKA PVARPRMSAQ ENSBTAP00000053170/1-783 PPGGDRELSI PRSGIVSPRV SRASSPEGRR PTSPQPGTKV PLARPRMSAQ ENSTTRP00000001172/1-777 PPGGDRELAS PRSGLGSPRV SRASSPEGRR PPSPQPGTKV PLARPRMSAQ bmy_06412T0/1-712 PPGGDRELAS PRSGLGSPRV SRASSPEGRR PPSPQPGTKV PLARPRMSAQ BACU002193/1-781 PPGGDRELAS PRSGLGSPRV SRASSPEGRR PPSPQPGTKV PLARPRMSAQ 601 650 ENSP00000263265/1-779 EQLERMRRNQ ECGRPFPRPT SPRLLTLGRT LSPARRQPDV EQRPVVGHSG ENSBTAP00000053170/1-783 EQLERIRRNQ ECGLPLPRPA SPRLLTLGRT LSPARRQPDA EQKPVLGHSG ENSTTRP00000001172/1-777 EQLERMRRHQ EYGRPLPRPA SPRLLTLGRT LSPAGRQPDA EQKPVLGHSG bmy_06412T0/1-712 EQLERMRRHQ EYGRPLPRPA SPRLLPLGRT LL-------- ---------- BACU002193/1-781 EQLERMRRHQ EYGRPLPRPA SPRLLTLGRT LSPAGRQPEA EQKPVLGHSG 651 700 ENSP00000263265/1-779 AQKWLRSSGS WSS--PRNTT PYLPTSEGHR ERVLSLSQAL ATEASQWHRM ENSBTAP00000053170/1-783 AQKWLRSSGS WSS--PRNTT PYLLTSEGHR ERVLSLSQAL AAEASQWRGM ENSTTRP00000001172/1-777 AQKWLRSSGS WSS--PRNTT PYLPTSEGHR ERVLSLSQAL ATEASQWHRM bmy_06412T0/1-712 ---------S WDTQEPRN-- ---------- ---------- ---------- BACU002193/1-781 AQKWLRSSGS WSS--PRNTT PYLPTSEGHR ERVLSLSQAL ATEASQWHRM 701 750 ENSP00000263265/1-779 MTGGNLDSQG DPLPGVPLPP SDPTRQETPP PRSPPVANSG STGFSRRGSG ENSBTAP00000053170/1-783 MTGGNLDCRG DPLPPAPPPR SDPTPQASSP RRSPPTANSC STGFSPRGSG ENSTTRP00000001172/1-777 MTGGNLESRG DPLPPAPPPP SEPPPQVSSP PRSPPAANSR SLGFSRRGSG bmy_06412T0/1-712 ----GLEARG --------PG AEPPPQVSSP PRSPPAANSH SSGFSRRGSG BACU002193/1-781 MTGGNLESRG DPLPPAPPPP SEPPPQVSSP PRSPPAANSR SSGFSRRGSG 751 800 ENSP00000263265/1-779 RGGGPTPWGP AWDAGIAPPV LPQDEGAWPL RVTLLQSSF ENSBTAP00000053170/1-783 RGAGPASWEQ TWDSEPAPPA LTPDEGAWPL RVTLLQSSF ENSTTRP00000001172/1-777 RGAGPASWEP TWDSGIAPPA LTQDEGAWPL RVTLLQSSF bmy_06412T0/1-712 RGAGPASWEP TWDSGIAPPA LTQDEGAWPL RVTLLQSSF BACU002193/1-781 RGAGPASWEP TWDSGIAPPA LTQDEGAWPL RVTLLQSSF