KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:15 2014 Check: 00 .. Name: ENSP00000222823/1-953 Len: 954 Check: 9984 Weight: 1.00 Name: ENSBTAP00000053171/1-954 Len: 954 Check: 9520 Weight: 1.00 Name: ENSTTRP00000010516/1-953 Len: 954 Check: 6461 Weight: 1.00 Name: bmy_22094T0/1-817 Len: 954 Check: 6810 Weight: 1.00 Name: BACU005841/1-633 Len: 954 Check: 7890 Weight: 1.00 // 1 50 ENSP00000222823/1-953 MEEQGHSEME IIPSESHPHI QLLKSNRELL VTHIRNTQCL VDNLLKNDYF ENSBTAP00000053171/1-954 MEKHGCSKME IVPSESHSFI KLLKVNREHL VTHIRNTQCL LDNLLQNDYF ENSTTRP00000010516/1-953 MEKQGRSEME IIRSESHSYI KLLKVNREHL VTHVRNTQCL LDNLLQNEYF bmy_22094T0/1-817 MEKQGRSEME IIPSESQSYI KLLKVNREHL VTHVRNTQCL LDNLLQNDYF BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000222823/1-953 SAEDAEIVCA CPTQPDKVRK ILDLVQSKGE EVSEFFLYLL QQLADAYVDL ENSBTAP00000053171/1-954 SNEDAEIVCA CPTQPDKVRR ILDLVQSKGE EVSEFFLHVI QQLADAYVDL ENSTTRP00000010516/1-953 SAEDVEIVCA CPTQPDKVRR ILDLVQSKGE EVSEFFLYVL QRLTDAYVDL bmy_22094T0/1-817 STEDVEIVCA CPTQPDKVRK ILDLVQSKGE EVSEFFLCVL QRLTDAYVDL BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000222823/1-953 RPWLLEIGFS PSLLTQSKVV VNTDPVSRYT QQLRHHLGRD SKFVLCYAQK ENSBTAP00000053171/1-954 RPWLSEIGFS PSPLIQSKAV VNTDPVSGYS QKLQQQLGRD SKFILCYAQK ENSTTRP00000010516/1-953 RPWLSEISFS PSQLIQSKAV VNTDPVSRYS QKLRQQLGRD SKFVLCYAQK bmy_22094T0/1-817 RPWLSEISFS PSQLIQSKAV VNTDPVSRYS QKLRQQLGRD SKFILCYAQK BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000222823/1-953 EELLLEEIYM DTIMELVGFS NESLGSLNSL ACLLDHTTGI LNEQGETIFI ENSBTAP00000053171/1-954 EELLLEQMYT DTVVELVNFS NESLGSLDSL ACLLDASTGV LNEQGEIIFV ENSTTRP00000010516/1-953 EELLLEEMYT DTVVELVDFG NESLGSLGSL ACLLDPSTGV LNEQGETIFI bmy_22094T0/1-817 EELLLEEMYT DTIVELVDFA NESLGNLGSL ACLLDPSTGV LNEHGETIFV BACU005841/1-633 -------MYT DTIVELVDFG NESLGSLGSL ACLLDPSTGV LNEHGETIFV 201 250 ENSP00000222823/1-953 LGDAGVGKSM LLQRLQSLWA TGRLDAGVKF FFHFRCRMFS CFKESDRLCL ENSBTAP00000053171/1-954 FGDAGMGKSM LLQRLQSLWA AGQLDPGIKF FFHFRCRTLS CFKKSAALCL ENSTTRP00000010516/1-953 FGDAGVGKSM LLQRLQSLWA AGQLDAELRF FFHFRCRTFS CFKESASLCL bmy_22094T0/1-817 FGDAGVGKSM LLQRLQSLWA AGQLDAELRF FFHFRCRTFS CFKESASLCL BACU005841/1-633 FGDAGVGKSM LLQRLQSLWA AGQLDAELRF FFHFRCRTFS CFKESASLCL 251 300 ENSP00000222823/1-953 QDLLFKHYCY PERDPEEVFA FLLRFPHVAL FTFDGLDELH SDLDLSRVPD ENSBTAP00000053171/1-954 QDLLFKHYCY PEQDPGEVFA FLLRFPHTAL FTFDGLDELH SDFDLSSEPD ENSTTRP00000010516/1-953 QDLLFKHYCY PEQDPEEVFA FLLRFPHTAL FTFDGLDELH SDFDLSGEPD bmy_22094T0/1-817 RDLLFKHYCY PEQDPEEVFA FLLRFPHTAL FTFDGLDELH SDFDLSREPD BACU005841/1-633 RDLLFKHYCY PEQDPEEVFA FLLRFPHTAL FTFDGLDELH SDFDLSREPD 301 350 ENSP00000222823/1-953 SSCPWEPAHP LVLLANLLSG KLLKGASKLL TARTGIEVPR QFLRKKVLLR ENSBTAP00000053171/1-954 TSSPWEPAHP LALLASLLSG KLLKGARKLL TARTGVEVPR HLLWKKVLLR ENSTTRP00000010516/1-953 TSSPWEPAHP LVLLANLLSG KLLKGAHKLL TARTGVEIPR HLLWKKVLLR bmy_22094T0/1-817 TSSPWEPAHP LVLLANLLSG KLLKGARKLL TARTGVEIPR HLLWKKVFLR BACU005841/1-633 TSSPWEPAHP LVLLANLLSG KLLKGARKLL TARTGIEIPR HLLWKKVLLR 351 400 ENSP00000222823/1-953 GFSPSHLRAY ARRMFPERAL QDRLLSQLEA NPNLCSLCSV PLFCWIIFRC ENSBTAP00000053171/1-954 GFSPSHLRAY TGRMFPEHAV RQRLLDQLEA NPNLCSLCAV PLFCWIIFRC ENSTTRP00000010516/1-953 GFSPSHLRAY AGRMFPERAV RQRLLDQLEA NANLFSLCAV PLFCWIIFRC bmy_22094T0/1-817 GFSPSHLRAY AGRMFPERAV RQRLLDQLEA NANLFSLCAV PLFCWIIFRC BACU005841/1-633 GFSPSHLRAY AGKMFPERAV RQRLLDQLEA NANLFSLCTV PLFCWIIFRC 401 450 ENSP00000222823/1-953 FQHFRAAFEG SPQLPDCTMT LTDVFLLVTE VHLNRMQPSS LVQRNTRSPV ENSBTAP00000053171/1-954 FQHFHDAFES SPQLPDLTVT LTDIFLLVTE VHLNRTQPTS LVQQNTRSQT ENSTTRP00000010516/1-953 FQHFYDTFDG LLQLPDRAVT LTDVFLLVTE VHLNRTQPTS LVQRNTRSQT bmy_22094T0/1-817 FQHFYDAFDG SPQLPDRTVT LTDVFLLVTE VHLNRTQPTS LVQRNTRSQT BACU005841/1-633 FQHFYDAFDG SPQLPDRTVT LTDVFLLVTE VHLNRTQPTS LVQRNTRSQT 451 500 ENSP00000222823/1-953 ETLHAGRDTL CSLGQVAHRG MEKSLFVFTQ EEVQASGLQE RDMQLGFLRA ENSBTAP00000053171/1-954 ETLRAGRDTL CSLGRVAHRG MEKSLFVFNQ DEVQASEVRE GDLQLGFLRT ENSTTRP00000010516/1-953 ETFRAGRGTL HSLGQVAHRG MEKSFFVFSQ EEVQASEVQE GDLQLGFLRA bmy_22094T0/1-817 ETFRAGRGTL RSLGQVAHWG MEKSFFVFSQ EEVQASEVQE GDLKLGFLRA BACU005841/1-633 ETFRAGRGTL RSLGQVAHWG MEKSFFVFSQ EEVQASEVQE GDLKLGFLRA 501 550 ENSP00000222823/1-953 LPELGPGGDQ QSYEFFHLTL QAFFTAFFLV LDDRVGTQEL LRFFQEWMPP ENSBTAP00000053171/1-954 MPELGLGGEQ QSYEFFHLTL QAFFAALFLV VDDKVGTREL LRFFQEWTPP ENSTTRP00000010516/1-953 VPELGLEGDQ QSYEFFHLTL QAFFAAFFLV VDDKVGTREL LCFFQEWAPH bmy_22094T0/1-817 VPELGLRGDQ QSYEFFHLTL QAFFAAFFLV VDDKVGTREL LRFFQEWAPH BACU005841/1-633 VPELGLGGDQ QSYEFFHLTL QAFFAAFFLV VDDKVGTREL LRFFQEWAPH 551 600 ENSP00000222823/1-953 AGA-ATTSCY PPFLPFQCLQ GSGPAREDLF KNKDHFQFTN LFLCGLLSKA ENSBTAP00000053171/1-954 EEAVATSTCY PPFLPVHCLG GHDLHGEDPF KNKDHFHFTN LFLCGLLSKG ENSTTRP00000010516/1-953 GEA-AAASCY PRFLPIQCLR GRGLAGEDPF KNKDHFHFTN LFLCGLLSKD bmy_22094T0/1-817 GEA-AAASCY PRFLPIQCLG GRGLAGEDPF KNKDHFHFTN LFLCGLLSKG BACU005841/1-633 REA-AAASCY PRFLPSQCLG GRGLAGEDPF KNKDHFHFTN LFLCGLLSKG 601 650 ENSP00000222823/1-953 KQKLLRHLVP AAALRRKRKA LWAHLFSSLR GYLKSLPRVQ VESFNQVQAM ENSBTAP00000053171/1-954 KQKLLQHLVP TAALRRKRKA LWTHLFASLR SHLKSLPRVQ SGGFNQVQAL ENSTTRP00000010516/1-953 KQKLLRHLVP AATLRRKRRA LWAYLFASLR SHLKHLPRVR SGGFSQVQAM bmy_22094T0/1-817 KQKLLRHLVP AAALRRKRRA LWAYLFASLR SHLKNLPRVQ SGGFSQVQAM BACU005841/1-633 KQKLLRHLVP AGALRRKRRA LWACLFASLR SHLKNLPRVQ SGSFSQVQAM 651 700 ENSP00000222823/1-953 PTFIWMLRCI YETQSQKVGQ LAARGICANY LKLTYCNACS ADCSALSFVL ENSBTAP00000053171/1-954 PTFIWMLRCI YETQSEKVGQ LAARGICANY LKLTFCNACS ADCSALSFVL ENSTTRP00000010516/1-953 PTFVWMLRCI YETQSEKVGQ LAARGICANY LKLTFCNVCS ADCSALSFVL bmy_22094T0/1-817 PTFLWMLRCI YETQSEKVGQ LAARGICANY LKLTFCNACS ADCSALSFVL BACU005841/1-633 PTFLWMLRCI YETQSEKVGQ LAARGICANY LKLTFCNACS ADCSALSFVL 701 750 ENSP00000222823/1-953 HHFPKRLALD LDNNNLNDYG VRELQPCFSR LTVLRLSVNQ ITDGGVKVLS ENSBTAP00000053171/1-954 HHLRKRLALD LDNNNLNDFG VRELQPCFSR LTVIRLSVNQ ITDSGVKVLY ENSTTRP00000010516/1-953 HHFPKRLALD LDNNNLNDYG VRELQPCFSH LTVIRLSVNQ ITDSGVKVLC bmy_22094T0/1-817 HHFPKRLALD LDNNNVNDYG VRELQPCFSR LTVIRLSVNQ ITDTGVKVLC BACU005841/1-633 HHFPKRLALD LDNNNLNDYG VRELQPCFSH LTVIRLSVNQ ITDSGVKVLC 751 800 ENSP00000222823/1-953 EELTKYKIVT YLGLYNNQIT DVGARYVTKI LDECKGLTHL KLGKNKITSE ENSBTAP00000053171/1-954 EELTKYKILT FLGLYNNQIT DVGARYIARI LDECKGLTHL KLGKNKITSE ENSTTRP00000010516/1-953 EELTKYKILT FLGLYNNQIT DVGATYIARI LDECTGLTHL KLGKNKITSE bmy_22094T0/1-817 EELTKYKILT FLGLYNNQIT DVGARYVARI LDECPGLTHL KLGKNKITSE BACU005841/1-633 EELPKYKILT FLGLYNNQIT DVGARYIARI LDECTGLTHL K--------- 801 850 ENSP00000222823/1-953 GGKYLALAVK NSKSISEVGM WGNQVGDEGA KAFAEALRNH PSLTTLSLAS ENSBTAP00000053171/1-954 GGKSLALAVK NSKSIFEVGM WGNQIGDEGA KAFAEALRNH PSLTNLSLAF ENSTTRP00000010516/1-953 GGKCLALAVK NSKSIFEVGX XXXXXGDEGA RAFAEALRNH PSLTNLSLAF bmy_22094T0/1-817 GGKCLALAVK NSKSIFEV-- ---------- ---------- ---------- BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000222823/1-953 NGISTEGGKS LARALQQNTS LEILWLTQNE LNDEVAESLA EMLKVNQTLK ENSBTAP00000053171/1-954 NGISTEGGKS LAWALQQNAS LRIFWLTKNE LDDEVAESFA EMLKVNQTLK ENSTTRP00000010516/1-953 NGISTEGGKS LAWALQQNAS LKIFWLTKNE LDDEVAESLA EMLKVNQTLK bmy_22094T0/1-817 ---------- ---------- ---------- ---------- ---------- BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000222823/1-953 HLWLIQNQIT AKGTAQLADA LQSNTGITEI CLNGNLIKPE EAKVYEDEKR ENSBTAP00000053171/1-954 HLWLIQNQIT AKGIAQLAEA LQKNTGIMEI CLNGNLIKPE EAKVFEDEKR ENSTTRP00000010516/1-953 HLWLIQNQIT AKGIAQLADA LQKNTGIMEI CLNGNLIKPE EAKVFEDEKR bmy_22094T0/1-817 ---------- ---------- ---------- ---------- ---------- BACU005841/1-633 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000222823/1-953 IICF ENSBTAP00000053171/1-954 IICF ENSTTRP00000010516/1-953 IVCF bmy_22094T0/1-817 ---- BACU005841/1-633 ----