KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:20 2014 Check: 00 .. Name: ENSP00000358140/1-1382 Len: 1392 Check: 9726 Weight: 1.00 Name: ENSBTAP00000053182/1-1378 Len: 1392 Check: 5212 Weight: 1.00 Name: ENSTTRP00000001581/1-1346 Len: 1392 Check: 8461 Weight: 1.00 Name: bmy_08522T0/1-1332 Len: 1392 Check: 3515 Weight: 1.00 Name: BACU004701/1-1047 Len: 1392 Check: 1414 Weight: 1.00 // 1 50 ENSP00000358140/1-1382 MPAYFQRPEN ALKRANEFLE VGKKQPALDV LYDVMKSKKH RTWQKIHEPI ENSBTAP00000053182/1-1378 MPAYFQRPEN ALKRANEFLE VGKKQPALDV LYDVMKSKKH RTWQKIHEPI ENSTTRP00000001581/1-1346 MPAYFQRPEN ALKRANEFLE VGKKQPALDV LYDVMKSKKH RTWQKIHEPI bmy_08522T0/1-1332 ---------- ---------- ---------- ----MKSKKH RTWQKIHEPI BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000358140/1-1382 MLKYLELCVD LRKSHLAKEG LYQYKNICQQ VNIKSLEDVV RAYLKMAEEK ENSBTAP00000053182/1-1378 MLKYLELCVD LRKSHLAKEG LYQYKNICQQ VNIKSLEDVV RAYLKLAEEK ENSTTRP00000001581/1-1346 MLKYLELCVD LRKSHLAKEG LYQYKNICQQ VNIKSLEDVV RAYLKLAEEK bmy_08522T0/1-1332 MLKYLELCVD LRKSHLAKEG LYQYKNICQQ VNIKSLEDVV RAYLKLAEEK BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000358140/1-1382 TEAAKEESQQ MVLDIEDLDN IQTPESVLLS AVSGEDTQDR TDRLLLTPWV ENSBTAP00000053182/1-1378 TEAAKEESQQ MVLDIEDLDN IQTPESVLLS AVSGEDTQDR TDRLLLTPWV ENSTTRP00000001581/1-1346 TEAAKEESQQ MVLDIEDLDN IQTPESVLLS AVSGEDTQDR TDRLLLTPWV bmy_08522T0/1-1332 TEAAKEESQQ MVLDIEDLDN IQTPESVLLS AVSGEDTQDR TDRLLLTPWV BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000358140/1-1382 KFLWESYRQC LDLLRNNSRV ERLYHDIAQQ AFKFCLQYTR KAEFRKLCDN ENSBTAP00000053182/1-1378 KFLWESYRQC LDLLRNNSRV ERLYHDIAQQ AFKFCLQYTR KAEFRKLCDN ENSTTRP00000001581/1-1346 KFLWESYRQC LDLLRNNSRV ERLYHDIAQQ AFKFCLQYTR KAEFRKLCDN bmy_08522T0/1-1332 KFLWESYRQC LDLLRNNSRV ERLYHDIAQQ AFKFCLQYTR KAEFRKLCDN BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000358140/1-1382 LRMHLSQIQR HHNQSTAINL NNPESQSMHL ETRLVQLDSA ISMELWQEAF ENSBTAP00000053182/1-1378 LRMHLSQIQR HHNQSTAINL NNPESQSMHL ETRLVQLDSA ISMELWQEAF ENSTTRP00000001581/1-1346 LRMHLSQIQR HHNQSTAINL NNPESQSMHL ETRLVQLDSA ISMELWQEAF bmy_08522T0/1-1332 LRMHLSQIQR HHNQSTAINL NNPESQSMHL ETRLVQLDSA ISMELWQEAF BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000358140/1-1382 KAVEDIHGLF SLSKKPPKPQ LMANYYNKVS TVFWKSGNAL FHASTLHRLY ENSBTAP00000053182/1-1378 KAVEDIHGLF SLSKKPPKPQ LMANYYNKVS TVFWKSGNAL FHASTLHRLY ENSTTRP00000001581/1-1346 KAVEDIHGLF SLSKKPPKPQ LMANYYNKVS TVFWKSGNAL FHASTLHRLY bmy_08522T0/1-1332 KAVEDIHGLF SLSKKPPKPQ LMANYYNKVS TVFWKSGNAL FHASTLHRLY BACU004701/1-1047 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000358140/1-1382 HLSREMRKNL TQDEMQRMST RVLLATLSIP ITPERTDIAR LLDMDGIIVE ENSBTAP00000053182/1-1378 HLSREMRKNL TQEEMQRMST RVLLATLSIP ITPERTDIAR LLDMDGIIVE ENSTTRP00000001581/1-1346 HLSREMRKNL TQEEMQRMST RVLLATLSIP ITPERTDIAR LLDMDGIIVE bmy_08522T0/1-1332 HLSREMRKNL TQEEMQRMST RVLLATLSIP ITPERTDIAR LLDMDGIIVE BACU004701/1-1047 ---------- ---------M SXXXXXLSIP ITPERTDIAR LLDMDGIIVE 351 400 ENSP00000358140/1-1382 KQRRLATLLG LQAPPTRIGL INDMVRFNVL QYVVPEVKDL YNWLEVEFNP ENSBTAP00000053182/1-1378 KQRRLATLLG LQAPPTRIGL INDMVRFNVL QYVVPEVKDL YNWLEVEFNP ENSTTRP00000001581/1-1346 KQRRLATLL- ---------- -RPXVRFNVL QYVVPEVKDL YNWLEVEFNP bmy_08522T0/1-1332 KQRRLATLLG LQAPPTRIGL INDMVRFNVL QYVVPEVKDL YNWLEVEFNP BACU004701/1-1047 KQRRLATLLG LQAPPTRIGL INDMVRFNVL QYVVPEVKDL YNWLEVEFNP 401 450 ENSP00000358140/1-1382 LKLCERVTKV LNWVREQPEK EPELQQYVPQ LQNNTILRLL QQVSQIYQSI ENSBTAP00000053182/1-1378 LKLCERVTKV LNWVREQPEK EPELQQYVPQ LQNNTILRLL QQVAQIYQSI ENSTTRP00000001581/1-1346 LKLCDRVTKV LNWVREQPEK EPELQQYVPQ LQNNTILRLL QQVAQIYQSI bmy_08522T0/1-1332 LKLCERVTKV LNWIREQPEK EPELQQYVPQ LQSNTILRLL QQVAQIYQSI BACU004701/1-1047 LKLCERVTKV LNWIREQPEK EPELQQYVPQ LQNNTILRLL QQVAQIYQSI 451 500 ENSP00000358140/1-1382 EFSRLTSLVP FVDAFQLERA IVDAARHCDL QVRIDHTSRT LSFGSDLNYA ENSBTAP00000053182/1-1378 EFSRLTSLVP FVDAFQLERA IVDAARHCDL QVRIDHTSRT LSFGSDLNYA ENSTTRP00000001581/1-1346 EFSRLTSLVP FVDAFQLERA IVDAARHCDL QVRIDHTSRT LSFGSDLNYA bmy_08522T0/1-1332 EFSRLTSLVP FVDAFQLERX IVDAARHCDL QVRIDHTSRT LSFGSDLNYA BACU004701/1-1047 EFSRLTSLVP FVDAFQLERA IVDAARHCDL QVRIDHTSRT LSFGSDLNYA 501 550 ENSP00000358140/1-1382 TREDAPIGPH LQSMPSEQIR NQLTAMSSVL AKALEVIKPA HILQEKEEQH ENSBTAP00000053182/1-1378 TREDAPIGPH LQSMPSEQIR NQLTAMSSVL AKALEVIKPA HILQEKEEQH ENSTTRP00000001581/1-1346 TREDAPIGPH LQSMPSEQIR NQLTAMSSVL AKALEVIKPA HILQEKEEQH bmy_08522T0/1-1332 TREDAPIGPH LQSMPSEQIR NQLTAMSSVL AKALEVIKPA HILQEKEEQH BACU004701/1-1047 TREDAPIGPH LQSMPSEQIR NQLTAMSSVL AKALEVIKPA HILQEKEEQH 551 600 ENSP00000358140/1-1382 QLAVTAYLKN SRKEHQRILA RRQTIEERKE RLESLNIQRE KEELEQREAE ENSBTAP00000053182/1-1378 QLAVTAYLKN SRKEHQRILA RRQTIEERKE RLESLNIQRE KEELEQREAE ENSTTRP00000001581/1-1346 QLAVTAYLKN SRKEHQRILA RRQTIEERKE RLESLNIQRE KEELEQREAE bmy_08522T0/1-1332 QLAVTAYLKN SRKEHQRILA RRQTIEERKE RLESLNIQRE KEELEQREAE BACU004701/1-1047 QLAVTAYLKN SRKEHQRILA RRQTIEERKE RLESLNIQRE KEELEQREAE 601 650 ENSP00000358140/1-1382 LQKVRKAEEE RLRQEAKERE KERILQEHEQ IKKKTVRERL EQIKKTELGA ENSBTAP00000053182/1-1378 LQKVRKAEEE RLRQEAKERE KERILQEHEQ IKKKTVRERL EQIKKTELGA ENSTTRP00000001581/1-1346 LQKVRKAEEE RLRQEAKERE KERILQEHEQ IKKKTVRERL EQIKKTELGA bmy_08522T0/1-1332 LQKVRKAEEE RLRQEAKERE KERILQEHEQ IKKKTVRERL EQIKKTELGA BACU004701/1-1047 LQKVRKAEEE RLRQEAKERE KERILQEHEQ IKKKTVRERL EQIKKTELGA 651 700 ENSP00000358140/1-1382 KAFKDIDIED LEELDPDFIM AKQVEQLEKE KKELQERLKN QEKKIDYFER ENSBTAP00000053182/1-1378 KAFKDIDIED LEELDPDFIM AKQVEQLEKE KKELQERLKN QEKKIDYFER ENSTTRP00000001581/1-1346 KAFKDIDIED LEELDPDFIM AKQVEQLEKE KKELQERLKN QEKKIDYFER bmy_08522T0/1-1332 KAFKDIDIED LEELDPDFIM AKQVEQLEKE KKELQERLKN QEKKIDYFER BACU004701/1-1047 KAFKDIDIED LEELDPDFIM AKQVEQLEKE KKELQERLKN QEKKIDYFER 701 750 ENSP00000358140/1-1382 AKRLEEIPLI KSAYEEQRIK DMDLWEQQEE ERITTMQLER EKALEHKNRM ENSBTAP00000053182/1-1378 AKRLEEIPLI KSAYEEQRIK DMDLWEQQEE ERITTMQLER EKALEHKNRM ENSTTRP00000001581/1-1346 AKRLEEIPLI KSAYEEQRIK DMDLWEQQEE ERITTMQLER EKALEHKNRM bmy_08522T0/1-1332 AKRLEEIPLI KSAYEEQRIK DMDLWEQQEE ERITTMQLER EKALEHKNRM BACU004701/1-1047 AKRLEEIPLI KSAYEEQRIK DMDLWEQQEE ERITTMQLER EKALEHKNRM 751 800 ENSP00000358140/1-1382 SRMLEDRDLF VMRLKAARQS VYEEKLKQFE ERLAEERHNR LEERKRQRKE ENSBTAP00000053182/1-1378 SRMLEDRDLF VMRLKAARQS VYEEKLKQFE ERLAEERHNR LEERKRQRKE ENSTTRP00000001581/1-1346 SRMLEDRDLF VMRLKAARQS VYEEKLKQFE ERLAEERHNR LEERKRQRKE bmy_08522T0/1-1332 SRMLEDRDLF VTRLKAARQS VYEEKLKQFE ERLAEERHNR LEERKRQRKE BACU004701/1-1047 SRMLEDRDLF VTRLKAARQS VYEEKLKQFE ERLAEERHNR LEERKRQRKE 801 850 ENSP00000358140/1-1382 ERRITYYREK EEEEQRRAEE QMLKEREERE RAERAKREEE LREYQERVKK ENSBTAP00000053182/1-1378 ERRITYYREK EEEEQRRAEE KMLKEREERE RAERAKREEE LREYQERVKK ENSTTRP00000001581/1-1346 ERRITYYREK EEEEQRRAEE KMLKEREERE RAERAKREEE LREYQERVKK bmy_08522T0/1-1332 ERRITYYREK EEEEQRRAEE KMLKEREERE RAERAKREEE LREYQERVKK BACU004701/1-1047 ERRITYYREK EEEEQRRAEE KMLKEREERE RAERAKREEE LREYQERVKK 851 900 ENSP00000358140/1-1382 LEEVERKKRQ RELEIEERER RREEERRLGD SSLSRKDSRW GDRDSEGTWR ENSBTAP00000053182/1-1378 LEEVERKKRQ RELEIEERER RREEERRLGD DSLSRKDSRW GDRDTEGTWR ENSTTRP00000001581/1-1346 LEEVERKKRQ RELEIEERER RREEERRLGD DSLSRKDPRW GDRDAEGTWR bmy_08522T0/1-1332 LEEVERKKRQ RELEIEERER RREEERRLGD DPLSRKDSRW GDRDSEGTWR BACU004701/1-1047 LEEVERKKRQ RELEIEERER RREEERRLGD DPLSRKDSRW GDRDSEGTWR 901 950 ENSP00000358140/1-1382 KGPEADSEWR RGPPEKEWRR GEGRDEDRSH RRDEERPRRL GDDEDREPSL ENSBTAP00000053182/1-1378 KGPETDSEWR RGPPEKEWRR GEGRDEERPH RRDDDRPRRL GDDEERESSV ENSTTRP00000001581/1-1346 KVPEVDSEWR RGPPEKEWRR GEGRDEERPQ RRDEDRPKRL GDEEERESSL bmy_08522T0/1-1332 KVPEIDSEWR RGPPEKEWRR GEGRDEERPQ RRDEDRPRRS GDDEERESSL BACU004701/1-1047 KVPEIDSEWR RGPPEKEWRR GEGRDEERPQ RRDEDRPRRS GDDEERESSL 951 1000 ENSP00000358140/1-1382 RPDDDRVPRR GMDDDRGPRR GPEEDRFSRR GADDDRPSWR NTDDDRPPRR ENSBTAP00000053182/1-1378 RPDDDRIPRR GMDDDRGPRR GPDEDRFSRR GADDDRPSWR STDDDRPPRR ENSTTRP00000001581/1-1346 RPDDDRVPRR GMDDDRGPRR GPDEDRFSRR GADDDRPFWR NADDDRPPRR bmy_08522T0/1-1332 RPDDDRVPRR GMDDDRGPRR GPDEDRFSRR GTDDDRPSWR NADDDRPPRR BACU004701/1-1047 RPDDDRVPRR GMDDDRGPRR GPDEDRFSRR GTDDDRPSWR NADDDRPPRR 1001 1050 ENSP00000358140/1-1382 IADEDRGNWR HADDDRPPRR GLDEDRGSWR TADEDRGPRR GMDDDRGPRR ENSBTAP00000053182/1-1378 IGDEDRGSWR HADDDRPPRR GLDEDRGSWR TADEDRGPRR GLDEDRGPRR ENSTTRP00000001581/1-1346 IGDEDRASWR QADDDRPPRR GLDEDRGSWR TADEDRGPRR GLDEDRGLRR bmy_08522T0/1-1332 IGDEDRGVWR QADDDRPPRR GLDEDRGSWR TADEDRGPRR GMDEDRGLRR BACU004701/1-1047 IGDEDRGVWR QADDDRPPRR GLDEDRGSWR TADEDRGPRR GMDEDRGLRR 1051 1100 ENSP00000358140/1-1382 GGADDERSSW RNADDDRGPR RGLDDDRGPR RGMDDDRGPR RGMDDDRGPR ENSBTAP00000053182/1-1378 GGAEDERSSW RNADDDR--- --------PR RGMDDDRGPR RGLDDDRGPR ENSTTRP00000001581/1-1346 GGADEERSSW RNADDDR--- --------PR RGVDDDRG-- --------PR bmy_08522T0/1-1332 GGADEERSSW RNADDDR--- --------PR RGMDDDRG-- --------PR BACU004701/1-1047 GGADEERSSW RNADDDR--- --------PR RGMDDDRG-- --------PR 1101 1150 ENSP00000358140/1-1382 RGMDDDRGPR RGLDDDRGPW RNADDDRIPR RGAEDDRGPW RNMDDDRLSR ENSBTAP00000053182/1-1378 RGLDDDRGPW RNTDDDRFSR RGADDDRFSR RGADDDRGPW RNMDDDRISR ENSTTRP00000001581/1-1346 RGLDDDRGPW RNTDDDRFSR RSADDDRFSR RGADDDRGPW RNTDDDRISR bmy_08522T0/1-1332 RGLDEDRGPW RNTDDDRFSR RSADDDRFSR RGADDDRGPW RNTDDDRISR BACU004701/1-1047 RGLDDDRGPW RNTDDDRFSR RSADDDRFSR RGADDDRGPW RNTDDDRISR 1151 1200 ENSP00000358140/1-1382 RADDDRFPRR GDDSRPGPWR PLVKP--GGW REKEKAREES WGPPRESRPS ENSBTAP00000053182/1-1378 RADDDRIPRR GDDSRPGPWR PFVKPDLGGW REKEKAREES WGPPRDSRPS ENSTTRP00000001581/1-1346 RADDDRIPRR GDDSRPGPWR PFVKP--GGW REKEKAREES WGPPRESRPS bmy_08522T0/1-1332 RADDDRIPRR SDDSRPGPWR PFVKP--GGW REKEKAREES WGPPRESRPS BACU004701/1-1047 RADDDRIPRR GDDSRPGPWR PFVKP--GGW REKEKAREES WGPPRESRPS 1201 1250 ENSP00000358140/1-1382 EEREWDREKE RDRDNQDREE NDKDP----- ---ERERDRE RDVDREDRFR ENSBTAP00000053182/1-1378 EDREWEREKE RDRDNQDRDE NDRDPERERD RERERERDRE RDGDRDDRFR ENSTTRP00000001581/1-1346 EDREWDREKE RDRDNQDRDE NDRDP----- ---ERERDRE RDGDREDRFR bmy_08522T0/1-1332 EDREWDREKE RDRDNQDRDE NDRDPERERD RERERERDRE RDGDREDRFR BACU004701/1-1047 EDREWDREKE RDRDNQDRDE NDRDPERERD RERERERDRE RDGDREDRFR 1251 1300 ENSP00000358140/1-1382 RPRDEGGWRR GPAEESSSWR DSSRRDDRDR DDRRRERDDR RDLRERRDLR ENSBTAP00000053182/1-1378 RPRDEGGWRR GPAEESSSWR DASRRDDRDR DDRRRERDDR RDLRDR---R ENSTTRP00000001581/1-1346 RPRDEAGWRR GPAEESSSWR DASRRDDRER DDRRRERDER RDLRER---R bmy_08522T0/1-1332 RPRDEAGWRR GPAEESSSWR DASRRDDRDR DDRRRERDER RDLRER---R BACU004701/1-1047 RPRDEAGWRR GPAEESSSWR DASRRDDRDR DDRRRERDER RDLRER---R 1301 1350 ENSP00000358140/1-1382 DDRDRRGPPL RSEREEVSSW RRADDRKDDR VEERDPPRRV PPPALSRDRE ENSBTAP00000053182/1-1378 DDRDRRGPPL RSEREEVSSW RRTDDRKDDR AEERDTPRRV PPAALSRDRD ENSTTRP00000001581/1-1346 DDRDRRGPPL RPEREEVSSW RRADDRKDDR AEERDAPRRV PPAALSRDRE bmy_08522T0/1-1332 DDRDRRGPPL RPEREEVSSW RRADDRKDDR AEERDAPRRV PPAALSRDRE BACU004701/1-1047 DDRDRRGPPL RPEREEVSSW RRADDRKDDR AEERDAPRRV PPAALSRDRE 1351 1400 ENSP00000358140/1-1382 RDRDREREGE KEKASWRAEK DRESLRRTKN ETDEDGWTTV RR ENSBTAP00000053182/1-1378 RDRDREREGE KEKTSWRAEK DRESLRRTKN ETDEDGWTTV RR ENSTTRP00000001581/1-1346 RDRDRDREGE KEKTSWRAEK DRESLRRTKN ETDEDGWTTV RR bmy_08522T0/1-1332 RDRDRDREGE KEKTSWRAEK DRESLRRTKN ETDEDGWTTV RR BACU004701/1-1047 RDRDRDREGE KEKTSWRAEK DRESLRRTKN ETDEDGWTTV RR