KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:23 2014 Check: 00 .. Name: ENSTTRP00000008003/1-1512 Len: 1581 Check: 2132 Weight: 1.00 Name: ENSP00000300651/1-1581 Len: 1581 Check: 4272 Weight: 1.00 Name: ENSBTAP00000053186/1-1575 Len: 1581 Check: 5253 Weight: 1.00 Name: BACU007007/1-1550 Len: 1581 Check: 5366 Weight: 1.00 Name: bmy_12734T0/1-1077 Len: 1581 Check: 9358 Weight: 1.00 // 1 50 ENSTTRP00000008003/1-1512 MKAQGETEES EKLSKMSSLL ERLHAKFNQN RPWSETIKLV RQVMEKRVVM ENSP00000300651/1-1581 MKAQGETEES EKLSKMSSLL ERLHAKFNQN RPWSETIKLV RQVMEKRVVM ENSBTAP00000053186/1-1575 MKAQGETEES EKLSKMSSLL ERLHAKFNQN RPWSETIKLV RQVMEKRVVM BACU007007/1-1550 MKAQGETEES EKLSKMSSLL ERLHAKFNQN RPWSETIKLV RQVMEKRVVM bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008003/1-1512 SSGGHQHLVS CLETLQKALK VTSLPAMTDR LESIARQNGL GSHLSASGTE ENSP00000300651/1-1581 SSGGHQHLVS CLETLQKALK VTSLPAMTDR LESIARQNGL GSHLSASGTE ENSBTAP00000053186/1-1575 SSGGHQHLVS CLETLQKALK VTSLPAMTDR LESIARQNGL GSHLSASGTE BACU007007/1-1550 SSGGHQHLVS CLETLQKALK VTSLPAMTDR LESIARQNGL GSHLSASGTE bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008003/1-1512 CYITSDMFYV EVQLDPAGQL CDVKVAHHGE NPVSCPELVQ QLREKNFDEF ENSP00000300651/1-1581 CYITSDMFYV EVQLDPAGQL CDVKVAHHGE NPVSCPELVQ QLREKNFDEF ENSBTAP00000053186/1-1575 CYITSDMFYV EVQLDPAGQL CDVKVAHHGE NPVSCPELVQ QLREKNFDEF BACU007007/1-1550 CYITSDMFYV EVQLDPAGQL CDVKVAHHGE NPVSCPELVQ QLREKNFDEF bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008003/1-1512 -KHLKGLVNL YNV-GDNKLK TKMYLALQSL EQDLSKMAVM YWKATNAGPL ENSP00000300651/1-1581 SKHLKGLVNL YNLPGDNKLK TKMYLALQSL EQDLSKMAIM YWKATNAGPL ENSBTAP00000053186/1-1575 SKHLKGLVNL YNLPGDNKLK TKMYLALQSL EQDLSKMAVM YWKATNAGPL BACU007007/1-1550 SKHLKGLVNL YNLPGDNKLK TKMYLALQSL EQDLSKMAVM YWKATNAGPL bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008003/1-1512 DKILHGSVGY LTPRSGGHLM NLKYYASPSD LLDDKTTSPI ILHENNVPRS ENSP00000300651/1-1581 DKILHGSVGY LTPRSGGHLM NLKYYVSPSD LLDDKTASPI ILHENNVSRS ENSBTAP00000053186/1-1575 DKILHGSVGY LTPRSGGHLM NLKYYASPSD LLDDKTTSPI ILHENNVPRS BACU007007/1-1550 DKILHGSVGY LTPRSGGHLM NLKYYASPSD LLDDKTTSPI ILHENNVPRS bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000008003/1-1512 LGMNASVTIE GTSAMYKLPI APLIMGSHPV DNKXXXXXXX XXXXXXXXXX ENSP00000300651/1-1581 LGMNASVTIE GTSAVYKLPI APLIMGSHPV DNKWTPSFSS ITSANSVDLP ENSBTAP00000053186/1-1575 LGMNASVTIE GTSAMYKLPI APLIMGSHPV DNKWTPSFSL VTSANSVDLP BACU007007/1-1550 LGMNASVTIE GTSAMYKLPI APLIMGSHPV DNKWTPSFSS VTSANSVDLP bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000008003/1-1512 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000300651/1-1581 ACFFLKFPQP IPVSRAFVQK LQNCTGIPLF ETQPTYAPLY ELITQFELSK ENSBTAP00000053186/1-1575 ACFFLKFPQP LPVSRAFVQK IQNCTGIPLF ETQPTYVPLY ELITQFELSK BACU007007/1-1550 ACFFLKFPQP IPVSRAFVQK LQNCTGIPLF ETQPTYVPLY ELITQFELSK bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000008003/1-1512 XXXXXXXXXX XXXXXALPGQ QHCYFLNKDA PLPDGRSLQG TLVSKITFQH ENSP00000300651/1-1581 DPDPIPLNHN MRFYAALPGQ QHCYFLNKDA PLPDGRSLQG TLVSKITFQH ENSBTAP00000053186/1-1575 DPDPLPLNHN MRFYAALPGQ QHCYFLNKDA PLPDGRSLQG TLVSKITFQH BACU007007/1-1550 DPDPIPLNHN MRFYAALPGQ QHCYFLNKDA PLPDGRSLQG TLVSKITFQH bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000008003/1-1512 PGRVPLILNL IRHQVAYNTL IGSCVKRTIL KEDSPGLLQF EVCPLSESRF ENSP00000300651/1-1581 PGRVPLILNL IRHQVAYNTL IGSCVKRTIL KEDSPGLLQF EVCPLSESRF ENSBTAP00000053186/1-1575 PGRVPLILNL IRHQVAYNTL IGSCVKRTIL KEDSPGLLQF EVCPLSESRF BACU007007/1-1550 PGRVPLILNL IRHQVAYNTL IGSCVKRTIL KEDSPGLLQF EVCPLSESRF bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000008003/1-1512 SVSFQHPVND SLVCVVMDVQ DSTHVSCKLY KGLSDALICT DDFIAKVVQR ENSP00000300651/1-1581 SVSFQHPVND SLVCVVMDVQ DSTHVSCKLY KGLSDALICT DDFIAKVVQR ENSBTAP00000053186/1-1575 SVSFQHPVND SLVCVVMDVQ DSTHVSCKLY KGLSDALICT DDFIAKVVQR BACU007007/1-1550 SVSFQHPVND SLVCVVMDVQ DSTHVSCKLY KGLSDALICT DDFIAKVVQR bmy_12734T0/1-1077 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000008003/1-1512 CMSIPVTMRA IRRKAETIQA DTPALSLIAE TVEDMVKKNL PPASSPGYGM ENSP00000300651/1-1581 CMSIPVTMRA IRRKAETIQA DTPALSLIAE TVEDMVKKNL PPASSPGYGM ENSBTAP00000053186/1-1575 CMSIPVTMRA IRRKAETIQA DTPALSLIAE TVEDMVKKNL PPASSPGYGM BACU007007/1-1550 CMSIPVTMRA IRRKAETIQA DTPALSLIAE TVEDMVKKNL PPASSPGYGM bmy_12734T0/1-1077 -MSIPVTMRA IRRKAETIQA DTPALSLIAE TVEDMVKKNL PPASSPGYGM 551 600 ENSTTRP00000008003/1-1512 TTGNNPMSGT TTPTNTFPGG PITTLFNMSM SIKDRHESVG HGEDFSKVSQ ENSP00000300651/1-1581 TTGNNPMSGT TTPTNTFPGG PITTLFNMSM SIKDRHESVG HGEDFSKVSQ ENSBTAP00000053186/1-1575 TTGNNPMSGT TTPTNTFPGG PITTLFNMSM SIKDRHESVG HGEDFSKVSQ BACU007007/1-1550 TTGNNPMSGT TTPTNTFPGG PITTLFNMSM SIKDRHESVG HGEDFSKVSQ bmy_12734T0/1-1077 TTGNNPMSGT TTPTNTFPGG PITTLFNMSM SIKDRHESVG HGEDFSKVSQ 601 650 ENSTTRP00000008003/1-1512 NPILTSLLQI TGNGGSTIGS SLT-PHHMPP PVSSKAGNTK NHPKLMNLLK ENSP00000300651/1-1581 NPILTSLLQI TGNGGSTIGS SPTPPHHTPP PVSSMAGNTK NHPMLMNLLK ENSBTAP00000053186/1-1575 NPILTSLLQI TGNGGSTIGS SPTPPHHTPP PVSSMAGNTK NHPMLMNLLK BACU007007/1-1550 NPILTSLLQI TGNGGSTIGS SPTPPHHTPP PVSSMAGNTK NHPMLMNLLK bmy_12734T0/1-1077 NPILTSLLQI TGNGGSTIGS SPTPPHHTPP PVSSMAGNTK NHPMLMNLLK 651 700 ENSTTRP00000008003/1-1512 DIPAQDFSTL YGSSTLERQN SSSGAPRMEM CLGSNQ-RKK KKTRLSPDKP ENSP00000300651/1-1581 DNPAQDFSTL YGSSPLERQN SSSGSPRMEI CSGSNKTKKK KSSRLPPEKP ENSBTAP00000053186/1-1575 DNPAQDFSTL YGSSPLERQN SSSGSPRMEM CSGSNKTKKK KSSRLPPDKP BACU007007/1-1550 DNPAQDFSTL YGSSPLERQN SSSGSPRMEM CSGSNKAKKK KSSRLPPDKP bmy_12734T0/1-1077 DNPAQDFSTL YGSSPLERQN SSSGSPRMEM CSGSNKAKKK KSSRLPPDKP 701 750 ENSTTRP00000008003/1-1512 KHQTEDDFQR ELFSMDVDSQ -PIFDVNMTA DTLDMPHIIP APSQCSNPPT ENSP00000300651/1-1581 KHQTEDDFQR ELFSMDVDSQ NPIFDVNMTA DTLDTPHITP APSQCSTPPT ENSBTAP00000053186/1-1575 KHQTEDDFQR ELFSMDVDSQ NPIFDVNMTA DTLDTPHITP APSQCSTPPT BACU007007/1-1550 KHQTEDDFQR ELFSMDVDSQ NPIFDVNMTA DTLDTPHITP APSQCSTPPT bmy_12734T0/1-1077 KHQTEDDFQR ELFSMDVDSQ NPIFDVNMTA DTLDTPHITP APSQCSTPPT 751 800 ENSTTRP00000008003/1-1512 NYRQQVIHPQ PSIQRRGLGL RLDSIGPDVT DILSDIAEEA SKLPSTSDDC ENSP00000300651/1-1581 TYPQPVPHPQ PSIQRMVRLS SSDSIGPDVT DILSDIAEEA SKLPSTSDDC ENSBTAP00000053186/1-1575 TYPQPVPHPQ PSIQRMVRLS SSDSIGPDVT DILSDIAEEA SKLPSTSDDC BACU007007/1-1550 TYPQPVPHPQ SSIQRMVRLS SSDSIGPDVT DILSDIAEEA SKLPSTSDDC bmy_12734T0/1-1077 TYPQPVPHPQ SSIQRMVRLS SSDSIGPDVT DILSDIAEEA SKLPSTSDDC 801 850 ENSTTRP00000008003/1-1512 PPIGTPVRDS SSSGHSQSAL FDPDVFQANN NENPYTDPAD LIADAAGSPS ENSP00000300651/1-1581 PAIGTPLRDS SSSGHSQSTL FDSDVFQTNN NENPYTDPAD LIADAAGSPS ENSBTAP00000053186/1-1575 PPIGTPVRDS SSSGHSQSAL FDPDVFQANN NENPYTDPAD LIADAAGSPS BACU007007/1-1550 PPIGTPVRDS SSSGHSQSAL FDPDVFQANN NENPYTDPAD LIADAAGSPS bmy_12734T0/1-1077 PPIGTPVRDS SSSGHSQSAL FDPDVFQANN NENPYTDPAD LIADAAGSPS 851 900 ENSTTRP00000008003/1-1512 SDSPTNHFFP DGVDFNPDLL NSQSQSGFGE EYFDESSQSG DNDDFKGFTS ENSP00000300651/1-1581 SDSPTNHFFH DGVDFNPDLL NSQSQSGFGE EYFDESSQSG DNDDFKGFAS ENSBTAP00000053186/1-1575 SDSPTNHFFP DGVDFNPDLL NSQSQSGFGE EYFDESSQSG DNDDFKGFAS BACU007007/1-1550 SDSPTNHFFP DGVDFNPDLL NSQSQSGFGE EYFDESSQSG DNDDFKGFTS bmy_12734T0/1-1077 SDSPTNHFFP DGVDFNPDLL NSQSQSGFGE EYFDESSQSG DNDDFKGFTS 901 950 ENSTTRP00000008003/1-1512 QALNTLGVPM LGGDNGETKF KGNSQADTVD FSIIAVAGKA LGPTDLMEHH ENSP00000300651/1-1581 QALNTLGVPM LGGDNGETKF KGNNQADTVD FSIISVAGKA LAPADLMEHH ENSBTAP00000053186/1-1575 QALNTLGVPM LGGDNGETKF KGNSQADTVD FSIIAVAGKA LGPTDLMEHH BACU007007/1-1550 QALNTLGVPM LGGDNGETKF KGNSQADTVD FSIIAVA--- ---------- bmy_12734T0/1-1077 QALNTLGVPM LGGDNGETKF KGNSQADTVD FSIIAVAGKA LGPTDLMEHH 951 1000 ENSTTRP00000008003/1-1512 SGSQSPLLTT GDLGKEKTQK RVKEGNGTSS SSLSGPGLDS KPGKRSRTPS ENSP00000300651/1-1581 SGSQGPLLTT GDLGKEKTQK RVKEGNGTSN STLSGPGLDS KPGKRSRTPS ENSBTAP00000053186/1-1575 SGSQSPLLTT GDLGKEKTQK RVKEGNGASN SSLSGTGLDS KPGKRSRTPS BACU007007/1-1550 ---------- -----EKTQK RVKEGNGTSN SSLSGPGLDS KPGKRSRTPS bmy_12734T0/1-1077 SGSQSPLLTT GDLGKEKTQK RVKEGNGTSN SSLSGPGLDS KPGKRSRTPS 1001 1050 ENSTTRP00000008003/1-1512 NDGKSKDKPP KRKKADTEGK SPSHSCSNRP FTPPTSTGGS KSPGSSGRSQ ENSP00000300651/1-1581 NDGKSKDKPP KRKKADTEGK SPSHSSSNRP FTPPTSTGGS KSPGSAGRSQ ENSBTAP00000053186/1-1575 NDGKSKDKPP KRKKADTEGK SPSHS-SNRP FTPPTSTGGS KSPGSSGRSQ BACU007007/1-1550 NDGKSKDKPP KRKKADTEGK SPSHSSSNRP FTPPTSTGGS KSPGSSGRSQ bmy_12734T0/1-1077 NDGKSKDKPP KRKKADTEGK SPSHSSSNRP FTPPTSTGGS KSPGSSGRSQ 1051 1100 ENSTTRP00000008003/1-1512 TPPGVATPPI PKITIQIPKG TVMVGKPSSH SQYTSSGSVS SSGSKSHHSH ENSP00000300651/1-1581 TPPGVATPPI PKITIQIPKG TVMVGKPSSH SQYTSSGSVS SSGSKSHHSH ENSBTAP00000053186/1-1575 TPPGVATPPI PKITIQIPKG TVMVGKPSSH SQYTSSGSVS SSGSKSHHSH BACU007007/1-1550 TPPGVATPPI PKITIQIPKG TVMVGKPSSH SQYTSSGSVS SSGSKSHHSH bmy_12734T0/1-1077 TPPGVATPPI PKITIQIPKG TVMVGKPSSH SQYTSSGSVS SSGSKSHHSH 1101 1150 ENSTTRP00000008003/1-1512 --SSSSSASN SGKMKSSKSE GSSSSKLSSS IYSSQGSSGS SQSKNSSQSG ENSP00000300651/1-1581 SSSSSSSAST SGKMKSSKSE GSSSSKLSSS MYSSQGSSGS SQSKNSSQSG ENSBTAP00000053186/1-1575 --SSLSSASN SGKMKSSKSE GSSSSKLSSS IYSSQGSSGS SQSKNSSQSG BACU007007/1-1550 --SSSSSASN SGKMKSSKSE GSSSSKLSSS IYSSQGSSGS SQSKNSSQSG bmy_12734T0/1-1077 --SSSSSASN SGKMKSSKSE GSSSSKLSSS IYSSQGSSGS SQSKNSSQSG 1151 1200 ENSTTRP00000008003/1-1512 GKPGSSPITK HGLSSGSSST KMKPQGKPSS LMNPSLSKPN ISPSHSRPPG ENSP00000300651/1-1581 GKPGSSPITK HGLSSGSSST KMKPQGKPSS LMNPSLSKPN ISPSHSRPPG ENSBTAP00000053186/1-1575 GKPGSSPITK HGLSSGSSST KMKPQGKPSS LMNPSLSKPN ISPSHSRPPG BACU007007/1-1550 GKPGSSPITK HGLSSGSSST KMKPQGKPSS LMNPSLSKPN ISPSHSRPPG bmy_12734T0/1-1077 GKPGSSPITK HGLSSGSSST KMKPQGKPSS LMNPSLSKPN ISPSHSRPPG 1201 1250 ENSTTRP00000008003/1-1512 GSDKLASPMK PVPGTPPSSK AKSPISSGSG GSHMSGTSSS TGMKSSSGLG ENSP00000300651/1-1581 GSDKLASPMK PVPGTPPSSK AKSPISSGSG GSHMSGTSSS SGMKSSSGLG ENSBTAP00000053186/1-1575 GSDKLASPMK PVPGTPPSSK AKSPISSGSG GSHMSGTSSS TGMKSSSGLG BACU007007/1-1550 GSDKLASPMK PVPGTPPSSK AKSPISSGSG GSHMSGTSSS TGMKSSSGLG bmy_12734T0/1-1077 GSDKLASPMK PVPGTPPSSK AKSPISSGSG GSHMSGTSSS TGMKSSSGLG 1251 1300 ENSTTRP00000008003/1-1512 SSGSLSQKTP PSSNSCTASS SSFSSSGSSM SSSQNQHGSS KGKSPSRNKK ENSP00000300651/1-1581 SSGSLSQKTP PSSNSCTASS SSFSSSGSSM SSSQNQHGSS KGKSPSRNKK ENSBTAP00000053186/1-1575 SSGSLSQKTP PSSNSCTASS SSFSSSGSSM SSSQNQHGSS KGKSPSRNKK BACU007007/1-1550 SSGSLSQKTP PSSNSCTASS SSFSSSGSSM SSSQNQHGSS KGKSPSRNKK bmy_12734T0/1-1077 SSGSLSQKTP PSSNSCTASS SSFSSSGSSM SSSQNQHGSS KGKSPSRNKK 1301 1350 ENSTTRP00000008003/1-1512 PSLTAVIDKL KHGVVTSGPG GEDPMDGQVG VSTNSSSHPV SSKHNMSGGE ENSP00000300651/1-1581 PSLTAVIDKL KHGVVTSGPG GEDPLDGQMG VSTNSSSHPM SSKHNMSGGE ENSBTAP00000053186/1-1575 PSLTAVIDKL KHGVVTSGPG GEDPMDGQMG VSTN-SSHPV SSKHNMSGGE BACU007007/1-1550 PSLTAVIDKL KHGVVTSGPG GEDPMDGQMG VSTN-SSHAV SSKHNMSGGE bmy_12734T0/1-1077 PSLTAVIDKL KHGVVTSGPG GEDPMDGQMG VSTN-SSHPV SSKHNMSGGE 1351 1400 ENSTTRP00000008003/1-1512 FQGKREKSDK DKSKVSTLGG SVDSSKKTSE SKNVGSTGVA KIIISKHDGG ENSP00000300651/1-1581 FQGKREKSDK DKSKVSTSGS SVDSSKKTSE SKNVGSTGVA KIIISKHDGG ENSBTAP00000053186/1-1575 FQGKREKSDK DKSKVSTSGG SVDSSKKTSE SKNVGSTGVA KIIISKHDGG BACU007007/1-1550 FQGKREKSDK DKSKVSTLGG SVDTSKKTSE SKNVGSTGVA KIIISKHDGG bmy_12734T0/1-1077 FQGKREKSDK DKSKVSTLGG SVDSSKKTSE SKNVGSTGVA KIIISKHDGG 1401 1450 ENSTTRP00000008003/1-1512 SPSIKAKVTL QKPGESSGEG LRPQMASSKN YGSPLISGST PKHERGSPSH ENSP00000300651/1-1581 SPSIKAKVTL QKPGESSGEG LRPQMASSKN YGSPLISGST PKHERGSPSH ENSBTAP00000053186/1-1575 SPSIKAKVTL QKPGEGGGEG LRPQMASSKN YGSPLISGST PKHERGSPSH BACU007007/1-1550 SPSIKAKVTL QKPGESSGEG LRPQMASSKN YGSPLISGST PKHERGSPSH bmy_12734T0/1-1077 SPSIKAKVTL QKPGESSGEG LRPQMASSKN YGSPLISGST PKHERGSPSH 1451 1500 ENSTTRP00000008003/1-1512 SKSPAYTPQN LDSESESGSS IAEKSYQNSP SSDDGIRPLP EYSTEKHKKH ENSP00000300651/1-1581 SKSPAYTPQN LDSESESGSS IAEKSYQNSP SSDDGIRPLP EYSTEKHKKH ENSBTAP00000053186/1-1575 SKSPAYTPQN LDSESESGSS IAEKSYQNSP SSDDGIRPLP EYSTEKHKKH BACU007007/1-1550 SKSPAYTPQN LDSESESGSS IAEKSYQNSP SSDDGIRPLP EYSTEKHKKH bmy_12734T0/1-1077 SKSPAYTPQN LDSESESGSS IAEKSYQNSP SSDDGIRPLP EYSTEKHKKH 1501 1550 ENSTTRP00000008003/1-1512 KKEKKKVKDK DRDRDRDKD- ---------- ---------- ---------- ENSP00000300651/1-1581 KKEKKKVKDK DRDRDRDKDR DKKKSHSIKP ESWSKSPISS DQSLSMTSNT ENSBTAP00000053186/1-1575 KKEKKKVKDK --DRDRDKDR DKKKSHSIKP ESWSKSPISS DQSLSMTSNT BACU007007/1-1550 KKEKKKVKDK DRDRDRDKDR DKKKSHSIKP ESWSKSPISS DQSLSMTSNT bmy_12734T0/1-1077 KKEKKKVKDK DRDRDRDKDR DKKKSHSIKP ESWSKSPISS DQSLSMTSNT 1551 1600 ENSTTRP00000008003/1-1512 ---------- ---------- ---------- - ENSP00000300651/1-1581 ILSADRPSRL SPDFMIGEED DDLMDVALIG N ENSBTAP00000053186/1-1575 ILSTDRPSRL SPDFMIGEED DDLMDVALIG N BACU007007/1-1550 ILSTDRPSRL SPDFMIGEED DDLMDVALIG N bmy_12734T0/1-1077 ILSTDRPSRL SPDFMIGEED DDLMDVALIG N