KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:24 2014 Check: 00 .. Name: ENSP00000267584/1-723 Len: 760 Check: 1162 Weight: 1.00 Name: ENSTTRP00000004667/1-724 Len: 760 Check: 4451 Weight: 1.00 Name: ENSBTAP00000053188/1-724 Len: 760 Check: 9067 Weight: 1.00 Name: bmy_13121T0/1-538 Len: 760 Check: 952 Weight: 1.00 Name: BACU007706/1-608 Len: 760 Check: 7666 Weight: 1.00 // 1 50 ENSP00000267584/1-723 MAEEEETAAL TEKVIRTQRV FINLLDSYSS GNIGKFLSNC VVGASLEEIT ENSTTRP00000004667/1-724 MAEEEEVAVR TEKVKRIQRV FINLLDSYSS RNIGKFLSTS VVGASLEEIT ENSBTAP00000053188/1-724 MAEEEESAAP AEKAIRIQRV FINLVDSYSS RNIGKFLSNC VVGASLEEIT bmy_13121T0/1-538 MAEEEEVAAR TEKVIRIQRV FINLLDSYSS RNIGKFLSNS VVGASLEEIT BACU007706/1-608 ---------- ---------M TVNFL----- ---------- ---------- 51 100 ENSP00000267584/1-723 EEEEEEDENK SAMLEASSTK VKEGTFQIVG TLSKPDSPRP DFAVETYSAI ENSTTRP00000004667/1-724 EEEEKHDEDK SAVPEASSAN LKEGTFQIVG TLSTLETPCP NFAMETYYAI ENSBTAP00000053188/1-724 EEEEEDDENK SAMPEASMAK LKEGTFQIVG TVSKLDIPRP EFAVETYCGI bmy_13121T0/1-538 EEEEEHDEDK SAVPEASSAN LKEGTFQIVG TLSTLETPCP SFAVETYYAI BACU007706/1-608 ---------- ---------- ---------- ---------- ------FQAI 101 150 ENSP00000267584/1-723 SREDLLMRLL ECDVIIYNIT ESSQQMEEAI WAVSALSEEV SHFEKRKLFI ENSTTRP00000004667/1-724 SREDLLMHLL ECDVIIYNIT ENPQQVEEAI WAVSALNEEI SHFEKRKVFI ENSBTAP00000053188/1-724 SQEDLLLRLL ECDVIIYNIT ENPQQAEEAI WAVSALNEET SHFEKRKVFI bmy_13121T0/1-538 SREDLLMQLL ECDVIIYNIT ENPQQVEEAI WAVSALNEEI SHFEKRKVFI BACU007706/1-608 SREDLLMHLL ECDVIIYNIT ENPQQVEEAI WAVSALNEEI SHFEKRKVFI 151 200 ENSP00000267584/1-723 LLSTVMTWAR SKALDPEDSE VPFTEEDYRR RKSHPNFLDH INAEKMVLKF ENSTTRP00000004667/1-724 LVSTVMTWAR SKPLDPGDSE IPFTEEDYRR RKHHPNFLDH INAEKLVLKL ENSBTAP00000053188/1-724 LVSTVMTWAR SKPLDPDDSE VPFTEEDYRR RKQHPNFLDH INAEKMVLKF bmy_13121T0/1-538 LVSTVMTWAR SKPLDPDDSE IPFTEEDYRR RKHHPNFLDH INAEKMVLKF BACU007706/1-608 LVSTVMTWAR SKPLDPDDSE IPFTEEDYRR RKHHPNFLDH INAEKMVLKF 201 250 ENSP00000267584/1-723 GKKARKFAAY VVAAGLQYGA EGGMLHTFFK MAWLGEIPAL PVFGDGTNVI ENSTTRP00000004667/1-724 GKKVRKFATY VVAAGLQYGM EGGILHAFFK LAWSGEVPAL PVFGDGTNVI ENSBTAP00000053188/1-724 GKNVRKFATY VVAAGLQYGM EGGILHAFFK LAWLGEVPAL PVFGDGTNVI bmy_13121T0/1-538 GKKVRKFATY VVAAGLQYGM EGGILHAFFK LAWSGEVPAL PVFGDGTNVI BACU007706/1-608 GKKVRKFATY VVAAGLQYGM EGGILHAFFK LAWSGEVPAL PVFGDGTNVI 251 300 ENSP00000267584/1-723 PTIHVLDLAG VIQNVIDHVP KPHYLVAVDE SVHTLEDIVK CISKNTGPGK ENSTTRP00000004667/1-724 PAIHVLDLAG VIQNVIDHVP KFHYLVAVDE SVHTLEDFVK XISKSTGPGK ENSBTAP00000053188/1-724 PAIHVLDLAG VIQNIIDHVP KLRYLVAVDE SVHTLEDFVK CISKSTGPGK bmy_13121T0/1-538 PAIHVLDLAG VIQNVIDHVP KFRYLVAVDE SVHTLEDFVK CISKSTGPGK BACU007706/1-608 PAIHVLDLAG VIQNVIDHVP KFRYLVAVDE SVHTLEDFVK ---------- 301 350 ENSP00000267584/1-723 IQKIPRENAY LTKDLT---- ---------- ---------- ---------- ENSTTRP00000004667/1-724 IQKVPKENAF LTKDLT---- ---------- ---------- ---------- ENSBTAP00000053188/1-724 IQKVPKENAF LTKDLT---- ---------- ---------- ---------- bmy_13121T0/1-538 IQKVPKENAF LTKDLTVLVL EGFGVRRPGF QVHFSSSCTA GSLTYRNFLF BACU007706/1-608 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000267584/1-723 --QDCLDHLL VNLRMEALFV KENFNIRWAA QTGFVENINT ILKEYKQSRG ENSTTRP00000004667/1-724 --QEDIDHLL VNLRMETLIV KENFNIRWFA QAGFVENINS ILKEYKQSRR ENSBTAP00000053188/1-724 --QENIDHLL VNLRMEALFV KENFNIRWFA QAGFVENINS ILKEYKQSRR bmy_13121T0/1-538 TSQEDIDHLL VNLRMETLFV KDNFNIRWFA QAGFVENINS ILKEYKQSRR BACU007706/1-608 --QEDIDHLL VNLRMETLFV KENFNIRWFA QAGFVENINS ILKEYKQSRR 401 450 ENSP00000267584/1-723 LMPIKICILG PPAVGKSSIA KELANYYKLH HIQLKDVISE AIAKLEAIVA ENSTTRP00000004667/1-724 LLXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXEAIVT ENSBTAP00000053188/1-724 LLPIKICILG PPAVGKSSVA EVLAKYYKLH HIKLKDVISE AIAKLEAIIT bmy_13121T0/1-538 LLPIKICILG PPAVGKSSIA EVLSKYYKLH HIKLKDVISE AIAKLEAIIT BACU007706/1-608 LLPIKICILG PPAVGKSSIA EVLSKYYKLH HIKLKDVISE AIAKLEAIIT 451 500 ENSP00000267584/1-723 PNDVGE-GEE EVEEEEEEEN VEDAQELLDG IKESMEQNAG QLDDQYIIRF ENSTTRP00000004667/1-724 PKHVGEGGEE EGEEEEEAET VEDAQEFLDG IKESLEHNAG RLEDEYIIRF ENSBTAP00000053188/1-724 PKDVTEGGEE EGEEEEEEDN VEDAQELLEG IKESMDQNAG RLEDQYIIRF bmy_13121T0/1-538 PKDVREGGEE EGEEEEEEEN VEDAQELLDG IKESMEQNAG ---------- BACU007706/1-608 PKDVGEGGEE EGEEEEEEEN VEDAQELLDG IKESAEQNAG RLEDEYIIRF 501 550 ENSP00000267584/1-723 MKEKLKSMPC RNQGYILDGF PKTYDQAKDL FNQEDEEEED DVRGRMFPFD ENSTTRP00000004667/1-724 IREKLKSMPC KNQGYILDGF PKTYDQAKDL FNQEEEEEEE EARGKRFPFD ENSBTAP00000053188/1-724 MKEKLKSMPC RNQGYILDGF PKTYDQAKDL FSQEDEEEEE EGRGKMFPYD bmy_13121T0/1-538 ---------- ----YILDGF PKTYDQAKDL FNQDDEEEEE EARGKMFPFD BACU007706/1-608 IKEKLKSMPC KNQGYILDGF PKTYDQAKDL FNQEDEEEEE EARGKMFPFD 551 600 ENSP00000267584/1-723 KLIIPEFVCA LDASDEFLKE RVINLPESIV AGTHYSQDRF LRALSNYRDI ENSTTRP00000004667/1-724 KLIIPEFVCS LDASDEFLKE RVMNLPESIV AGTHYSQGQF LRALSSYRDR ENSBTAP00000053188/1-724 KLIMPEFVCS LDASDEFLKE RVMNLPESIV TGTHYSQDRF LRALSNYRDV bmy_13121T0/1-538 KLIIP----- ---------- ---------- ---------- ---------- BACU007706/1-608 KLIIPEFVCS LDASDEFLKE RVMNLPESIV AGTHYSQGQF LRALSNYRDI 601 650 ENSP00000267584/1-723 NIDDETVFNY FDELEIHPIH IDVGKLEDAQ NRLAIKQLIK EIGEPRNYGL ENSTTRP00000004667/1-724 NTEDETVLNY FDELEIYPIH IDVGKLEDAQ NRLAIKQLIK EIGEPRNYGL ENSBTAP00000053188/1-724 NTEDETVLNY FDELEIHPIH IDVGRLEDAQ NRLAIKQLIK EVGEPRNYGL bmy_13121T0/1-538 ---------- ---------- ---------- ---------- ---------- BACU007706/1-608 NTEDETVLNY FDELEIHPIH IDVGRLEDAQ NRLAIRQLIR EIGEPRNYGL 651 700 ENSP00000267584/1-723 TDEEKAEEER KAAEERLARE AAEEAEREHQ EAVEMAEKIA RWEEWNKRLE ENSTTRP00000004667/1-724 TDEEKAEEER RAAEERLAKE AMEEAERQHK EAAEMAEKIA RWEEWSKRLE ENSBTAP00000053188/1-724 TDEEKAEEER KAAEERLARE AMEEAEREHK EAVETAEKIA RWEEWNKRLE bmy_13121T0/1-538 ---------- ---------- ---------- ---------- -----GKNLH BACU007706/1-608 TDEEKAEEER RAAEEQLAKE AMEEAERQHK EAAETAEKIA RWEEWSKRLA 701 750 ENSP00000267584/1-723 EVKREERELL EAQSIPLRNY LMTYVMPTLI QGLNECCNVR PEDPVDFLAE ENSTTRP00000004667/1-724 EVKREEKELL EAQSIPLRNY LMTHVMPTLM QGLNECCKIR PDDPVDFLAE ENSBTAP00000053188/1-724 EVKREERELL EAQSIPLRNY LMTYVMPTLM QGLNECCKVR PDDPVDFLAE bmy_13121T0/1-538 EV-------- ---------- ---------- ---------- ---------- BACU007706/1-608 EVKREEKELL EAQSLPLRNY LMTHVMPTLM QGLNECCKIR PDDPVDFLAE 751 800 ENSP00000267584/1-723 YLFKNNPEAQ ENSTTRP00000004667/1-724 YLFKNNPEMQ ENSBTAP00000053188/1-724 YLFKNNPETQ bmy_13121T0/1-538 ---------- BACU007706/1-608 YLFKNNPEMQ