KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:34 2014 Check: 00 .. Name: ENSP00000366620/1-791 Len: 792 Check: 952 Weight: 1.00 Name: ENSBTAP00000053207/1-792 Len: 792 Check: 8854 Weight: 1.00 Name: ENSTTRP00000010358/1-791 Len: 792 Check: 8547 Weight: 1.00 Name: bmy_06048T0/1-467 Len: 792 Check: 155 Weight: 1.00 Name: BACU003002/1-784 Len: 792 Check: 7619 Weight: 1.00 // 1 50 ENSP00000366620/1-791 MWNMLIVAMC LALLGCLQAQ ELQGHVSIIL LGATGDLAKK YLWQGLFQLY ENSBTAP00000053207/1-792 VWKILMAAMC VALLSGLQAQ DLPRQVSIIL LGATGDLARK YLWQGLFHLY ENSTTRP00000010358/1-791 AWNMLTAAVC MALLGCLQAQ ELQGHVSVIL LGATGDLARK YLWQGLFQLY bmy_06048T0/1-467 ---------- ---------- MLEHH----- ---------- ---------- BACU003002/1-784 ---MLTAAVC VALLGCLQAQ ELQGHVSVIL LGATGDLARK YLWQGLFQLY 51 100 ENSP00000366620/1-791 LDEAGRGHSF SFHGAALTAP KQGQELMAKA LESLSCPKDM APSHCAEHKD ENSBTAP00000053207/1-792 LEEVGKGHHF RFHGTALTST EQGQEVIAKV LESLSCPGDM ASGHCAELKA ENSTTRP00000010358/1-791 LEEAGKGHSF RFHGTALTST KQGQEVIAKV LESLSCPRDT APGRCAELKA bmy_06048T0/1-467 ---------- ---------- ---------- ---LHCP--- ---------- BACU003002/1-784 LEEAGKGHSF RFHGTALTST KQGQEVIAKV LESLSCPRDT APGRCAELKA 101 150 ENSP00000366620/1-791 QFLQLSQYRQ LKTAEDYQAL NKDIEAQLQH AGLREAGRIF YFSVPPFAYE ENSBTAP00000053207/1-792 QFQQLSEYRQ LKTPEDYVAL SKDIEAQVEH EGLRETGRIF YLSVPPFAYV ENSTTRP00000010358/1-791 QFQQLSEYRR LKTPEDYLAL SKDIEARVQH EGLQEVGRIF YFSVPPFAYA bmy_06048T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU003002/1-784 QFQQLSEYRR LKTPEDYLAL SKDIEARVQH EGLQEAGRIF YFSVPPFAYA 151 200 ENSP00000366620/1-791 DIARNINSSC RPGPGAWLRV VLEKPFGHDH FSAQQLATEL GTFFQEEEMY ENSBTAP00000053207/1-792 DIARNINSSC RPGPGAWLRV VLEKPFGHDL HSAQQLATEL GSFFQEEEMY ENSTTRP00000010358/1-791 EIARSISSSC RPGPGAWLRV VLEKPFGHDH RSAQQLAAEL GSFFQEEEMY bmy_06048T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU003002/1-784 DIARSINSSC RPGPGAWLRV VLEKPFGHDH RSAQQLATEL GSFFQEEEMY 201 250 ENSP00000366620/1-791 RVDHYLGKQA VAQILPFRDQ NRKALDGLWN RHHVERVEII MKETVDAEGR ENSBTAP00000053207/1-792 RVDHYLGKQV VAQILPFRDQ NRAALDGLWN RHHVERVEIV MKETLDAEGR ENSTTRP00000010358/1-791 RVDHYLGKQV VAQILPFRDQ NRKALDGLWN RHHVERVEII MKETVDAEGR bmy_06048T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU003002/1-784 RVDHYLGKQV VAQILPFRDQ NRKALDGLWN RHHVERVEII MKETVDAEGR 251 300 ENSP00000366620/1-791 TSFYEEYGVI RDVLQNHLTE VLTLVAMELP HNVSSAEAVL RHKLQVFQAL ENSBTAP00000053207/1-792 TSFYEEYGVI RDVLQNHLTE VLTLVAMELP VNVSSPESVL QHKLQAFQAL ENSTTRP00000010358/1-791 TSFYEEYGVI GDVLQNHLTE ILMLVAMELP LNLSSSEAVL EHKLQAFRAL bmy_06048T0/1-467 ---------- ---------- ---------- ---------- ---------- BACU003002/1-784 TSFYEEYGVI GDVLQNHLTE ILMLVAMELP LDISSSEAVL GHKLQAFRAL 301 350 ENSP00000366620/1-791 RGLQRGSAVV GQYQSYSEQV RRELQKPDSF HSLTPTFAAV LVHIDNLRWE ENSBTAP00000053207/1-792 RSLQRHSAVL GQYQAYSGQV RRELQKPDSF HSLTPTFAGI LVHIDNLRWE ENSTTRP00000010358/1-791 RGLQRGSAVV GQYQAYRGQV RRELQKPDSF HSLTPTFAGV LVHIDNLRWE bmy_06048T0/1-467 ---------- ---------- ---------- ----PVTPGI LVHIDNLRWE BACU003002/1-784 RGLQRGSAVV GQYQAYRGQV RRELQKPDSF HSLTPTFAGI LVHIDNLRWE 351 400 ENSP00000366620/1-791 GVPFILMSGK ALDERVGYAR ILFKNQACCV QSEKHWAAAQ SQCLPRQLVF ENSBTAP00000053207/1-792 GVPFILMSGK ALDERVSYVR ILFKNQAFCV QSEKHWVAAQ SHCLPRQIIF ENSTTRP00000010358/1-791 GVPFILMSGK ALDERVGYVR ILFKDQAYCA QSEKRWVPAQ SHCLPQQIIF bmy_06048T0/1-467 GVPFILMSGK ALDERVGYVR ILFKDQAYCA QSEKRWVPAQ SHCLPQQIIF BACU003002/1-784 GVPFILMSGK ALDERVGYVR ILFKDQAYCA QSEKRWVPAQ SHCLPQQIIF 401 450 ENSP00000366620/1-791 HIGHGDLGSP AVLVSRNLFR PSLPS-SWKE MEGPPGLRLF GSPLSDYYAY ENSBTAP00000053207/1-792 YIGHGELGSP AVLVSRNLFQ PALPSASWKE VEGRPGLHLF GLPLSDYYAY ENSTTRP00000010358/1-791 YIGHGELGGP AVLVSRNLFR PSLPSASWKE VEGQPGLRLF GRPLSDYYAY bmy_06048T0/1-467 YIGHGELGSP AVLVSRNLFR PSLPSASWKE VEGQPGLRLF GRPLSDYYAY BACU003002/1-784 YIGHGELGSP AVLV-----R PSLPSASWKE VEGQPGLRLF GCPLSDYYAY 451 500 ENSP00000366620/1-791 SPVRERDAHS VLLSHIFHGR KNFFITTENL LASWNFWTPL LESLAHKAPR ENSBTAP00000053207/1-792 SPVREQDAYS LLISHIFHCR KDSFVTTENL LASWVFWTPL LDSLAHEVPR ENSTTRP00000010358/1-791 SPVREQDAYS ILISRIFHRR KDSFITMENL LASWVFWTPL LDSLAHEVPR bmy_06048T0/1-467 SPVREQDAYS ILISHIFHRR KDSFIAMENL LASWVFWTPL LDSLAHEVPR BACU003002/1-784 SPVREQDAYS ILISHIFHRR KDSFIAMENL LASWVFWTPL LDSLAHEVPR 501 550 ENSP00000366620/1-791 LYPGGAENGR LLDFEFSSGR LFFSQQQPEQ LVPGPGPAPM PSDFQVLRAK ENSBTAP00000053207/1-792 FYPGGAENGQ LLDFEFSGGH LSFSQPLPEQ LVPGPDSAPL PSDFQVLRAK ENSTTRP00000010358/1-791 LYPGGAENGH LLDFEFSGSH LSFSQPPLEQ LVLGPDSAPM PSDFQVLRAK bmy_06048T0/1-467 LYPGGAENGH LLDFEFSGSH LSFSQPPLEQ LVPGPDSAPM PSDFQVLGAK BACU003002/1-784 LYPGGAENGH LLDFEFSGSH LSFSQPPLEQ LVPGPDSAPM PSDFQVLGAK 551 600 ENSP00000366620/1-791 YRESPLVSAW SEELISKLAN DIEATAVRAV RRFGQFHLAL SGGSSPVALF ENSBTAP00000053207/1-792 YRESPLISAW PEELIARLAG DIEAAAVRAV RRFGKFHLAL SGGSSPVALF ENSTTRP00000010358/1-791 YRGSPLISAW PEELIARLAG DIEAAAVQAV KRFGKFHLAL SGGSSPVALF bmy_06048T0/1-467 YRDSPLISAW PEELIARLAG DIEAAAVRAV RRFGEFHLAL SGGSSPVALF BACU003002/1-784 YRDSPLISAW PEELIARLAG DIEAAAVRAV RRFGKFHLAL SGGSSPVALF 601 650 ENSP00000366620/1-791 QQLATAHYGF PWAHTHLWLV DERCVPLSDP ESNFQGLQAH LLQHVRIPYY ENSBTAP00000053207/1-792 QQLATGHYSF PWAHTHLWLV DERCVPLWDP ESNFQGLQTH LLQHVRVPHY ENSTTRP00000010358/1-791 QQLAMGHYGF PWAHTHLWLV DERCVPLWDP ESNFQGLQAH LLQHVRVPYY bmy_06048T0/1-467 QQLAMGHYGF PWAHTHLWLV DERCVPLWDP ESNFQGLQAH LLQHVRVPYY BACU003002/1-784 QQLAMGHYGF PWAHTHLWLV DERCVPLWDP ESNFQGLQAH LLQHVRVPYY 651 700 ENSP00000366620/1-791 NIHPMPVHLQ QRLCAEEDQG AQIYAREISA LVANSSFDLV LLGMGADGHT ENSBTAP00000053207/1-792 NVHPMPVHRR QRLCAEEDQG AQAYAEEISA LVTNGSFDLV LLGMGTDGHT ENSTTRP00000010358/1-791 NVHPMPVHRR QRLCAEEDQG AQAYAEEIST LVTNSSFDLV LLGMGTDGHT bmy_06048T0/1-467 NIHPMPVHRR QRLCAEEDQG AQAYAEEIST LVTNSSFDLV LLGMGTDGHT BACU003002/1-784 NIHPMPVHRR QRLCAEEDQG AQAYAEEIST LVTNSSFDLV LLGMGTDGHT 701 750 ENSP00000366620/1-791 ASLFPQSPTG LDGEQLVVLT TSPSQPHRRM SLSLPLINRA KKVAVLVMGR ENSBTAP00000053207/1-792 ASLFPQSPAG LDGEQLVVLT TSPSSPHRRM SLSLPLINRA RKVAVLVMGR ENSTTRP00000010358/1-791 ASLFPQSPVG LDGKQLVVLT TSSSSSHRRM XXXXXXXXXX XXXXXXXXXX bmy_06048T0/1-467 ASLFPQSPVG LDGEQLVVLT TSPSGPRRRM SLSLPVINRA RQVAVLVMGR BACU003002/1-784 ASLFPQSPVG LDGEQLVVLT TSPSSPRRRM SLSLPVINRA RQVAVLVMGR 751 800 ENSP00000366620/1-791 MKREITTLVS RVGHEPKKWP ISGVLPHSGQ LVWYMDYDAF LG ENSBTAP00000053207/1-792 MKREIAMLVS RVGRDPKKWP ISGVRPDSGQ LVWYMDYDAF LG ENSTTRP00000010358/1-791 XXXXXXXXXX XXXXXXXXXX XXXXXXXSGQ MVW-MDYDPF LG bmy_06048T0/1-467 MKREIALLVS RVGHEPRKWP ISGVRPESGQ LVWYMDYDAF LG BACU003002/1-784 MKREIALLVS RVGREPRKWP ISGVRPDSGQ LVWYMDYDAF LG