KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:56 2014 Check: 00 .. Name: bmy_11688T0/1-764 Len: 936 Check: 1859 Weight: 1.00 Name: BACU016604/1-909 Len: 936 Check: 2698 Weight: 1.00 Name: ENSTTRP00000008451/1-860 Len: 936 Check: 6450 Weight: 1.00 Name: ENSP00000263966/1-863 Len: 936 Check: 2923 Weight: 1.00 Name: ENSBTAP00000053221/1-863 Len: 936 Check: 5102 Weight: 1.00 // 1 50 bmy_11688T0/1-764 MQRRGALFGM PGGSGNRKMA AGDIGELLVP HMPTIRVPRS GDRVYKNECA BACU016604/1-909 MQYT---FQI ALESCELHRC V-----VFEP CLRCGNLEEQ GKKGLIRPPH ENSTTRP00000008451/1-860 MQRRGALFGM PGGSGNRKMA AGDIGELLVP HMPTIRVPRS GDRVYKNECA ENSP00000263966/1-863 MQRRGALFGM PGGSGGRKMA AGDIGELLVP HMPTIRVPRS GDRVYKNECA ENSBTAP00000053221/1-863 MQRRGALFGM PGGSGSRKMA AGDIGELLVP HMPTIRVPRS GDRVYKNECA 51 100 bmy_11688T0/1-764 FSYDSPNSEG GLYVCMNTFL AFGREHVERH FRKTGQSVYM YLKRHVREKV BACU016604/1-909 IKFQ--NSEG GLYVCMNTFL AFGREHVERH FRKTGQSVYM YLKRHVREKV ENSTTRP00000008451/1-860 FSYDSPNSEG GLYVCMNTFL AFGREHVERH FRKTGQSVYM YLKRHVREKV ENSP00000263966/1-863 FSYDSPNSEG GLYVCMNTFL AFGREHVERH FRKTGQSVYM HLKRHVREKV ENSBTAP00000053221/1-863 FSYDSPNSEG GLYVCMNTFL AFGREHVERH FRKTGQSVYM HLKRHVREKV 101 150 bmy_11688T0/1-764 RGASGGALPK RRNSKIFLDL DTDDDLNSDD YEYEDEAKLV IFPDHYEIAL BACU016604/1-909 RGASGGALPK RRNSKIFLDL DTDDDLNSDD YEYEDEAKLV IFPDHYEIAL ENSTTRP00000008451/1-860 RGASGGALPK RRNSKIFLDL DTDDDLNSDD FEYEDEAKLV IFPDHYEIAL ENSP00000263966/1-863 RGASGGALPK RRNSKIFLDL DTDDDLNSDD YEYEDEAKLV IFPDHYEIAL ENSBTAP00000053221/1-863 RGASGGALPK RRNSKMFLDL DTDDDLNSDD YEYEDEAKLV IFPDHYEIAL 151 200 bmy_11688T0/1-764 PNIEELPALV TIACDAVLSS KSPYRKQDPD TWENELPVSK YAN-NLTQLD BACU016604/1-909 PNIEELPALV TIACDAVLSS KSPYRKQDPD TWENELPVSK YAN-NLTQLD ENSTTRP00000008451/1-860 PNIEELPALV TIACDAVLSS KSPYRKQDPD TWENELPVSK YANMXXXXXX ENSP00000263966/1-863 PNIEELPALV TIACDAVLSS KSPYRKQDPD TWENELPVSK YAN-NLTQLD ENSBTAP00000053221/1-863 PNIEELPALV TIACDAVLSS KSPYRKQDPD TWENELPVSK YAN-NLTQLD 201 250 bmy_11688T0/1-764 NGVRIPPSGW KCARCDLREN LWLNLTDGSV LCGKWFFDSS GGNGHALEHY BACU016604/1-909 NGVRIPPSGW KCARCDLREN LWLNLTDGSV LCGKWFFDSS GGNGHALEHY ENSTTRP00000008451/1-860 XXXXXXXXGW KCARCDLREN LWLNLTDGSV LCGKWFFDSS GGNGHALEHY ENSP00000263966/1-863 NGVRIPPSGW KCARCDLREN LWLNLTDGSV LCGKWFFDSS GGNGHALEHY ENSBTAP00000053221/1-863 NGVRIPPSGW KCARCDLREN LWLNLTDGSV LCGKWFFDSS GGNGHALEHY 251 300 bmy_11688T0/1-764 RDLGYPLAVK LGAITPDGA- -----EEEPV LDPHLAKHLA HFGIDMLHMH BACU016604/1-909 RDLGYPLAVK LGAITPDGAD VYSFPEEEPV LDPHLAKHLA HFGIDMLHMH ENSTTRP00000008451/1-860 RDLGYPLAVK LGTITPDGAD VYSFQEEEPV LDPHLAKHLA HFGIDMLHMH ENSP00000263966/1-863 RDMGYPLAVK LGTITPDGAD VYSFQEEEPV LDPHLAKHLA HFGIDMLHMH ENSBTAP00000053221/1-863 RDTGYPLAVK LGTITPDGAD VYSFQEEEAV LDPHLAKHLA HFGIDMLHMH 301 350 bmy_11688T0/1-764 GTENGLQDND SQPRISEWEV IQETGTKLKP MYGPGYTGLK NLGNSCYLSS BACU016604/1-909 GTENGLQDND SQPRISEWEV IQETGTKLKP MYGPGYTGLK NLGNSCYLSS ENSTTRP00000008451/1-860 GTENGLQDND NKPRISEWEV IQETGTKLKP MYGPGYTGLK NLGNSCYLSS ENSP00000263966/1-863 GTENGLQDND IKLRVSEWEV IQESGTKLKP MYGPGYTGLK NLGNSCYLSS ENSBTAP00000053221/1-863 GTENGLQDND IKPRVSEWEV IQETGTKLKP MYGPGYTGLK NLGNSCYLSS 351 400 bmy_11688T0/1-764 VMQAIFSIPE FQRA------ ---------- --------TK LGHGLLSGQY BACU016604/1-909 VMQAIFSIPE FQRAYVGNLP RIFDYSPLDP TQDFNTQMTK LGHGLLSGQY ENSTTRP00000008451/1-860 VMQAIFSIPE FQRAYVGNLP RIFDYSPLDP TQDFNTQMTK LGHGLLSGQY ENSP00000263966/1-863 VMQAIFSIPE FQRAYVGNLP RIFDYSPLDP TQDFNTQMTK LGHGLLSGQY ENSBTAP00000053221/1-863 VMQAIFSIPE FQRAYVGNLP RIFDYSPLDP TQDFNTQMTK LGHGLLSGQY 401 450 bmy_11688T0/1-764 SKPPMKSELI EQVMKEEQKP QQNGISPRMF KAFVSKSHPE FSSNRQQDAQ BACU016604/1-909 SKPPMKSELI EQVMKEEHKP QQNGISPRMF KAFVSKSHPE FSSNRQQDAQ ENSTTRP00000008451/1-860 SKPPMKSELI EQVMKEEPKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263966/1-863 SKPPVKSELI EQVMKEEHKP QQNGISPRMF KAFVSKSHPE FSSNRQQDAQ ENSBTAP00000053221/1-863 SKPPVKSELI EQVMKEEHKP QQNGISPRMF KAFVSKSHPE FSSNRQQDAQ 451 500 bmy_11688T0/1-764 EFFLHLVNLV ERNRIGSENP SDVFRFLVEE RIQCCQTRKV RYTERVDYLM BACU016604/1-909 EFFLHLVNLV ERNRIGSENP SDVFRFLVEE RIQCCQTRKV RYTERVDYLM ENSTTRP00000008451/1-860 XXXXXXXXXX XRNRIGSENP SDVFRFLVEE RIQCCQTRKV RYTERVDYLM ENSP00000263966/1-863 EFFLHLVNLV ERNRIGSENP SDVFRFLVEE RIQCCQTRKV RYTERVDYLM ENSBTAP00000053221/1-863 EFFLHLVNLV ERNRIGSENP SDVFRFLVEE RIQCCQTRKV RYTERVDYLM 501 550 bmy_11688T0/1-764 QLPVAMEAAT NKDELIAYEL TRREAEANRK PLPELVRAKI PFSACLQAFS BACU016604/1-909 QLPVAMEAAT NKDELIAYEL TRREAEANRR PLPELVRAKI PFSACLQAFS ENSTTRP00000008451/1-860 QLPVAMEAAT NKDELIAYEL TRREAEANRR PLPELVRAKI PFSACLQAFS ENSP00000263966/1-863 QLPVAMEAAT NKDELIAYEL TRREAEANRR PLPELVRAKI PFSACLQAFS ENSBTAP00000053221/1-863 QLPVAMEAAT NKDELIAYEL TRREAESNRR PLPELVRAKI PFSACLQAFS 551 600 bmy_11688T0/1-764 EPENVDDFWS SALQAKSAGV KTSRFASFPE YLVVQIKKFT FGLDWVPKKF BACU016604/1-909 EPENVDDFWS SALQAKSAGV KTSRFASFPE YLVVQIKKFT FGLDWVPKKF ENSTTRP00000008451/1-860 EPENVDDFWS SALQAKSAGV KTSRFASFPE YLVVQIKKFT FGLDWVPKKF ENSP00000263966/1-863 EPENVDDFWS SALQAKSAGV KTSRFASFPE YLVVQIKKFT FGLDWVPKKF ENSBTAP00000053221/1-863 EPENVDDFWS SALQAKSAGV KTSRFASFPE YLVVQIKKFT FGLDWVPKKF 601 650 bmy_11688T0/1-764 DVSIDMPDLL DINHLRARGL QPGEEELPDI SPPVVIPDS- KDRLMNQLID BACU016604/1-909 DVSIDMPDLL DINHLRARGL QPGEEELPDI SPPVVIPDS- ---------K ENSTTRP00000008451/1-860 DVSIDMPDLL DINHLRARGL QPGEEELPDI SPPVVIPDDS KDRLMNQLID ENSP00000263966/1-863 DVSIDMPDLL DINHLRARGL QPGEEELPDI SPPIVIPDDS KDRLMNQLID ENSBTAP00000053221/1-863 DVSVDMPDLL DINHLRARGL QPGEEELPDI SPPIVIPDDS KDRLMTQLID 651 700 bmy_11688T0/1-764 PSDIDESSVM QLAEMGFPLE ACRKAVYFTG NMGAEVAFNW IIVHMEEPG- BACU016604/1-909 ASDIDESSVM QLAEMGFPLE ACRKAVYFTG NMGAEVAFNW IIVHMEEPDF ENSTTRP00000008451/1-860 PSDIDESSVM QLAEMGFPLE ACRKAVYFTG NMGAEVAFNW IIVHMEEPDF ENSP00000263966/1-863 PSDIDESSVM QLAEMGFPLE ACRKAVYFTG NMGAEVAFNW IIVHMEEPDF ENSBTAP00000053221/1-863 PSDIDESSVM QLAEMGFPLE ACRKAVYFTG NMGAEVAFNW IVVHMEEPDF 701 750 bmy_11688T0/1-764 SELLTQSGRV YQCVYV---- ---------- PFELMVQLFK RRQWQTSVTV BACU016604/1-909 AEPLTMPG-- YGGAASAGAS ----AGLDNQ PPEETVALIT SMGFHRNQAL ENSTTRP00000008451/1-860 AEPLTMPG-- YGGAASAAAS ----AGLDNQ PPEETVALIT SMGFHRNLAL ENSP00000263966/1-863 AEPLTMPG-- YGGAASAGAS VFGASGLDNQ PPEEIVAIIT SMGFQRNQAI ENSBTAP00000053221/1-863 AEPLTMPG-- YGGAASAGAS VFGATGLDNQ PPEETVAIIT SMGFHRNQAI 751 800 bmy_11688T0/1-764 EKFNRKMGNY NHECNQLLLT KEYED----- ---------- ---------- BACU016604/1-909 QALRATNSNL ERALDWIFSH PEFEEDSDFV IEMENNANAN IISEAKPEGP ENSTTRP00000008451/1-860 QALRATNSNL ERALDWIFSH PEFEEDSDFV IEMENNANAN IISEAKPEGP ENSP00000263966/1-863 QALRATNNNL ERALDWIFSH PEFEEDSDFV IEMENNANAN IISEAKPEGP ENSBTAP00000053221/1-863 QALRATNSNL ERALDWIFSH PEFEEDSDFV IEMENNANAN IVSEAKPEGP 801 850 bmy_11688T0/1-764 ---------- ------KVGI RLLWGRF--- WKKEGD---- ---------- BACU016604/1-909 RVKDGSGMYE LFAFISHMGT STMSGHYVCH IKKEGSGRVY QCVYVPFELM ENSTTRP00000008451/1-860 RVKDGSGMYE LFAFISHMGT STMSGHYVCH IKKEGXXXXY N--------- ENSP00000263966/1-863 RVKDGSGTYE LFAFISHMGT STMSGHYICH IKKEGRWVIY N--------- ENSBTAP00000053221/1-863 RVKDGSGMYE LFAFISHMGT STMSGHYVCH IKKEGRWVIY N--------- 851 900 bmy_11688T0/1-764 ---------- ---------- ---------- ---------- ---------- BACU016604/1-909 VQLFKRCQWH TSVTVEKFNR KMVNNFLILS LFLCEKSLLN IVKSERKKES ENSTTRP00000008451/1-860 ---------- ---------- ---------- ---------- ---------- ENSP00000263966/1-863 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053221/1-863 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_11688T0/1-764 ---------T IKKNGTTSQD KLLELDHQ-- ------ BACU016604/1-909 KLYVRYVMWD RKNNSKTNPN SLMHLIFSYS RNDLKT ENSTTRP00000008451/1-860 ---------D HKVCASERPP KDLGYMYFYR R--IPS ENSP00000263966/1-863 ---------D HKVCASERPP KDLGYMYFYR R--IPS ENSBTAP00000053221/1-863 ---------D HKVCASERPP KDLGYMYFYR R--IPS