KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:02:57 2014 Check: 00 .. Name: ENSP00000360366/1-607 Len: 632 Check: 4446 Weight: 1.00 Name: ENSTTRP00000012637/1-498 Len: 632 Check: 795 Weight: 1.00 Name: ENSBTAP00000053226/1-593 Len: 632 Check: 4418 Weight: 1.00 Name: bmy_14865T0/1-608 Len: 632 Check: 3131 Weight: 1.00 Name: BACU000238/1-598 Len: 632 Check: 2458 Weight: 1.00 // 1 50 ENSP00000360366/1-607 MIQNVG---- ---------- --NHLRRGLA SVFSNRTSRK SALRAGNDSA ENSTTRP00000012637/1-498 MIQNVG---- ---------- --NHLRRGLA SVFSNRASRK SASRTE-NN- ENSBTAP00000053226/1-593 LITTSG---- ---------- --NGHENGLA SVFSNRTSRK SASRTDSDN- bmy_14865T0/1-608 MVGGPGVSGT GRSGRPCCEL TAASVPQGLA SVFSNRASRK SASHTE-NN- BACU000238/1-598 MIQNVG---- ---------- --NHLRRGLA SVFSNRASRK SASHTG-NN- 51 100 ENSP00000360366/1-607 MADGEGYRNP TEVQMSQLVL PCHTNQRGEL SVGQLLKWID TTACLSAERH ENSTTRP00000012637/1-498 MAEDEGYRNP TEVQMSQLVL PCHTNQRGEL SVGQLLKWID TTACLSAERH ENSBTAP00000053226/1-593 MADGEGYRNP TEVQMSQLVL PCHTNQRGEL SVGQLLKWID ATACLSAERH bmy_14865T0/1-608 MAEGEGYQNP TEVQMSQLVL PCHTNQRGEL SVGQLLKWID TTACLSAERH BACU000238/1-598 MAEGEGYRNP TEVQMSQLVL PCHTNQRGEL SVGQLLKWID TTACLSAERH 101 150 ENSP00000360366/1-607 AGCPCVTASM DDIYFEHTIS VGQVVNIKAK VNRAFNSSME VGIQVASEDL ENSTTRP00000012637/1-498 AGCPCVTASM DDIYFEHTIS VGQVVNIKAK VNRAFNSSME VGIQVASEDL ENSBTAP00000053226/1-593 AGCPCVTASM DDIYFEHTIS VGQVVNIKAK VNRAFNSSME VGIQVVSEDL bmy_14865T0/1-608 AGCPCVTASM DDIYFEHTIS VGQVVNIKAK VNRAFNSSME VGIQVASEDL BACU000238/1-598 AGCPCVTASM DDIYFEHTIS VGQVVNIKAK VNRAFNSSME VGIQVASEDL 151 200 ENSP00000360366/1-607 CSEKQWNVCK ALATFVARRE ITKVKLKQIT PRTEEEKMEH SVAAERRRMR ENSTTRP00000012637/1-498 CSDKQWSVCK ALATFVAHRE VSKVKLKQIT PRTEEEKTEH SVAAERRRMR ENSBTAP00000053226/1-593 CSEKQWCVCK ALATFVAHRE LSKVKLKPTV PRTEEEKTEH SVAAERRRMR bmy_14865T0/1-608 CSDKQWSVCK ALATFVAHRE LSKVKLKQIT LRTEEEKTEH SVAAERRRMR BACU000238/1-598 CSDKQWSVCK ALATFVAHRE LSKVKLKQIT LRTEEEKTEH SVAAERRRMR 201 250 ENSP00000360366/1-607 LVYADTIKDL LANCAIQGDL ESRDCSRMVP AEKTRVESVE LVLPPHANHQ ENSTTRP00000012637/1-498 LVYTDTIKDL LANCVIQDDL ESRDCSRMVP AEKTRVESVE LVLPPHANHQ ENSBTAP00000053226/1-593 LVYADTIKDL LANCVIQDDL ESRDCSHMVP AEKTRVESVE LVLPPHANHQ bmy_14865T0/1-608 LVYTDTIKDL LANCVIQDDL ESRDCSRMVP AEKTRVESVE LVLPPHANHQ BACU000238/1-598 LVYTDTIKDL LANCVIQDDL ESRDCSRMVP AEKTRVESVE LVLPPHANHQ 251 300 ENSP00000360366/1-607 GNTFGGQIMA WMENVATIAA SRLCRAHPTL KAIEMFHFRG PSQVGDRLVL ENSTTRP00000012637/1-498 GNTFGGQIMA WMENVATIAA SRLCHAHPTL KAIEMFHFRG PSQVGDRLVL ENSBTAP00000053226/1-593 GNTFGGQIMA WMENVATIAA SRLCRAHPTL KTIEMFHFRG PSQVGDRLVL bmy_14865T0/1-608 GHTFGGQIMA WMENVATIAA SRLCRAHPTL KAIEMFHFRG PSQVGDRLVL BACU000238/1-598 GSTFGGQIMA WMENVATIAA SRLCRAHPTL KAIEMFHFRG PSQVGDRLVL 301 350 ENSP00000360366/1-607 KAIVNNAFKH SMEVGVCVEA YRQEAETHRR HINSAFMTFV VLDADDQPQL ENSTTRP00000012637/1-498 KAIVNNAFKN SMEVGVCVEA YHQEAETQRR HINSAFMTFV VLDADNQPQM ENSBTAP00000053226/1-593 KAIVNNAFKH SMEVGVCVEA YRQEAETHRR HINSAFMTFV VLGADDQPQM bmy_14865T0/1-608 KAIVNNAFKH SMEVGVCVEA YRQEAETQRR HINSAFMTFV VLDADNQPQM BACU000238/1-598 KAIVNNAFKH SMEVGVCVEA YRQEAETQRR HINSAFMTFV VLDADNQPQT 351 400 ENSP00000360366/1-607 LPWIRPQPGD GERRYREASA RKKIRLDRK- -----YIVSC KQTEVPLSVP ENSTTRP00000012637/1-498 LPWIRPQPGD GERRYREASA RKKIRLDRK- -----YIVSC KQAEMPLSVP ENSBTAP00000053226/1-593 LPWIRPQPGD GERRYREASA RKKIRLDRK- -----YIVSC KQAEMPLSVP bmy_14865T0/1-608 LPWIRPQPGD GERRYREASA RKKIRLDRK- -----YIVSC KQAEMPLSVP BACU000238/1-598 LPWIRPQPGD GERRYREASA RKKIRLDRKV GARRKYIVSC KQAEMPLSVP 401 450 ENSP00000360366/1-607 WDPSNQVYLS YNNVSSLKML VAKDNWVLSS EISQVRLYTL EDDKFLSFHM ENSTTRP00000012637/1-498 WDPSNQXXXX XXXXXXXXXX XXXXXXXXXX XXXXVRLYTL EEDKFLSFHM ENSBTAP00000053226/1-593 WDPSNQVYLS YNNVSSLKML VAKDNWVLSS ESNQVRLYTL EEDKFLSFHM bmy_14865T0/1-608 WDPSNQVYLS YNNVSSLKML VARDDWVLSS EISQVRLYTL EEDKFLSFHM BACU000238/1-598 WDPSNQVYLS YNNVSSLKML VARDNWVLSS EISQVRLYTL EEDKFLSFHM 451 500 ENSP00000360366/1-607 EMVVHVDAAQ AFLLLSDLRQ RPEWDKHYRS VELVQQVDED DAIYHVTSPA ENSTTRP00000012637/1-498 EMLVNVDAAQ AFLLLSDLRR RPEWDKHYRS VELVQQVDED DAIYHIISPA ENSBTAP00000053226/1-593 EMLVHVDTAQ AFLLLSDLRR RPEWDKHCRS VELVQQVDED DAIYHVISPA bmy_14865T0/1-608 EMLVHVDAAQ AFLLLSDLRR RPEWDKHYRS VELVQQVDED DAIYHIVSPA BACU000238/1-598 EMLVHVDAAQ AFLLLSDLRR RPEWDKHYRS VELVQQVDED DAIYHIVSPA 501 550 ENSP00000360366/1-607 LGGHTKPQDF VILASRRKPC DNGDPYVIAL RSVTLPTHRE TPEYRRGETL ENSTTRP00000012637/1-498 LGGDPKPQDF VILASRRKPC DN-------- ---------- ---------- ENSBTAP00000053226/1-593 LGGDPKPQDF IILASRRKPC DTGEPYVIAL RSVTLPTHRE TPEYRRGETV bmy_14865T0/1-608 LGGDSKPQDF VILASRRKPC DNRDPYVIAM RSVTLPTHLE TSEYRRGETI BACU000238/1-598 LGGDPKPQDF VILASRRKPC DNRDPYVIAM RSVTLPTHLE TSEYRRGETI 551 600 ENSP00000360366/1-607 CSGFCLWREG DQLTKCCWVR VSLTELVSAS GFYSWGLESR SKGRRSDGWN ENSTTRP00000012637/1-498 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053226/1-593 CSGFCFWREG DQLTKVSYYN ------QATP GVLKY-VTTN VTG------- bmy_14865T0/1-608 CSGFCFRHEG DQLTKVSYYN ------QATP GFLKY-VTTN VTG------- BACU000238/1-598 CSGFCFWHEG DQLTKVSYYN ------QATP GFLKY-VTTN VTG------- 601 650 ENSP00000360366/1-607 GKLAGGHLST LKAIPVAKIN SRFGY---LQ DT ENSTTRP00000012637/1-498 ---------- ---------- ---------- -- ENSBTAP00000053226/1-593 --LSSEFYTT FKACEHFLLD NRNDLAPSLQ TL bmy_14865T0/1-608 --LSSEFYTT FKACEQFLLD NRNDLAPSLQ TL BACU000238/1-598 --LSSEFYTT FKACEQFLLD NRNDLAPSLQ TL