KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:02 2014 Check: 00 .. Name: ENSP00000308741/1-846 Len: 851 Check: 866 Weight: 1.00 Name: ENSBTAP00000053232/1-846 Len: 851 Check: 6039 Weight: 1.00 Name: ENSTTRP00000000904/1-845 Len: 851 Check: 5979 Weight: 1.00 Name: bmy_09828T0/1-849 Len: 851 Check: 1209 Weight: 1.00 Name: BACU002241/1-326 Len: 851 Check: 7526 Weight: 1.00 // 1 50 ENSP00000308741/1-846 -MLFTVSCSK MSSIVDRDDS SIFDGLVEED DKDKAKRVSR NKSEKKRRDQ ENSBTAP00000053232/1-846 IMLFTVSCSK MSSLVDRDDG SIFDGLVEED DKDKAKRVSR NKSEKKRRDQ ENSTTRP00000000904/1-845 -MLFTVSCSK MSSLVDRDDG SIFDGLVEED DKDKAKRVSR NKSEKKRRDQ bmy_09828T0/1-849 --MSTTRRKR NMLCCLPDDG SIFDGLVEED DKDKAKRVSR NKSEKKRRDQ BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000308741/1-846 FNVLIKELGS MLPGNARKMD KSTVLQKSID FLRKHKEITA QSDASEIRQD ENSBTAP00000053232/1-846 FNVLIKELGS MLPGNARKMD KSTVLQKSID FLRKHKEITA QSDASEIRQD ENSTTRP00000000904/1-845 FNVLIKELGS MLPGNARKMD KSTVLQKSID FLRKHKEITA QSDASEIRQD bmy_09828T0/1-849 FNVLIKELGS MLPGNARKMD KSTVLQKSID FLRKHKEITA QSDASEIRQD BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000308741/1-846 WKPTFLSNEE FTQLMLEALD GFFLAIMTDG SIIYVSESVT SLLEHLPSDL ENSBTAP00000053232/1-846 WKPTFLSNEE FTQLMLEALD GFFLAIMTDG SIIYVSESVT SLLEHLPSDL ENSTTRP00000000904/1-845 WKPTFLSNEE FTQLMLEALD GFFLAIMTDG SIIYVSESVT SLLEHLPSDL bmy_09828T0/1-849 WKPTFLSNEE FTQLMLEALD GFFLAIMTDG SIIYVSESVT SLLEHLPSDL BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000308741/1-846 VDQSIFNFIP EGEHSEVYKI LSTHLLESDS LTPEYLKSKN QLEFCCHMLR ENSBTAP00000053232/1-846 VDQSIFNFIP EGEHSEVYKI LSTHLLESDS LTPEYLKSKN QLEFCCHMLR ENSTTRP00000000904/1-845 VDQSIFNFIP EGEHSEVYKI LSTHLLESDS LTPEYLKSKN QLEFCCHMLR bmy_09828T0/1-849 VDQSIFNFIP EGEHSEVYKI LSTHLLESDS LTPEYLKSKN QLEFCCHMLR BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000308741/1-846 GTIDPKEPST YEYVKFIGNF KSLNSVSSSA HNGFEGTIQR THRPSYEDRV ENSBTAP00000053232/1-846 GTIDPKEPST YEYVKFIGNF KSLNSVSTSA HNGFEGTIQR THRPSYEDRV ENSTTRP00000000904/1-845 GTIDPKEPST YEYVKFIGNF KSLNSVSTSA HNGFEGTIQR THKPSYEDRV bmy_09828T0/1-849 GTIDPKEPST YEYVKFIGNF KSLNSVSTSA HNGFEGTIQR THRPSYEDRV BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000308741/1-846 CFVATVRLAT PQFIKEMCTV EEPNEEFTSR HSLEWKFLFL DHRAPPIIGY ENSBTAP00000053232/1-846 CFVATVRLAT PQFIKEMCTV EEPNEEFTSR HSLEWKFLFL DHRAPPIIGY ENSTTRP00000000904/1-845 CFVATVRLAT PQFIKEMCTV EEPNEEFTSR HSLEWKFLFL DHRAPPIIGY bmy_09828T0/1-849 CFVATVRLAT PQFIKEMCTV EEPNEEFTSR HSLEWKFLFL DHRAPPIIGY BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000308741/1-846 LPFEVLGTSG YDYYHVDDLE NLAKCHEHLM QYGKGKSCYY RFLTKGQQWI ENSBTAP00000053232/1-846 LPFEVLGTSG YDYYHVDDLE NLAKCHEHLM QYGKGKSCYY RFLTKGQQWI ENSTTRP00000000904/1-845 LPFEVLGTSG YDYYHVDDLE NLAKCHEHLM QYGKGKSCYY RFLTKGQQWI bmy_09828T0/1-849 LPFEVLGTSG YDYYHVDDLE NLAKCHEHLM QYGKGKSCYY RFLTKGQQWI BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000308741/1-846 WLQTHYYITY HQWNSRPEFI VCTHTVVSYA EVRAERRREL GIEESLPETA ENSBTAP00000053232/1-846 WLQTHYYITY HQWNSRPEFI VCTHTVVSYA EVRAERRREL GIEESLPETA ENSTTRP00000000904/1-845 WLQTHYYITY HQWNSRPEFI VCTHTVVSYA EVRAERRREL GIEESLPETA bmy_09828T0/1-849 WLQTHYYITY HQWNSRPEFI VCTHTVVSYA EVRAERRREL GIEESLPETA BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000308741/1-846 ADKSQDSGSD NRINTVSLKE ALERFDHSPT PSASSRSSRK SSHTAVSDPS ENSBTAP00000053232/1-846 ADKSQDSGSD NRINTVSLKE ALERFDHSPT PSASSRSSRK SSHTAVSDPS ENSTTRP00000000904/1-845 ADKSQDSGSD NRINTVSLKE ALERFDHSPT PSASSRSSRK SSHTAVSDPS bmy_09828T0/1-849 ADKSQDSGSD NRINTVSLKE ALERFDHSPT PSASSRSSRK SSHTAVSDPS BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000308741/1-846 STPTKIPTDT STPPRQHLPA HEKMVQRRSS FSSQSINSQS VGSSLTQPVM ENSBTAP00000053232/1-846 STPTKIPTDT STPPRQHLPA HEKMAQRRSS FSSQSINSQT VGQSLTQPVM ENSTTRP00000000904/1-845 STPTKIPTDT STPPRQHLPA HEKMAQRRSS FSSQSINSQS VGQSLTQPVM bmy_09828T0/1-849 STPTKIPTDT STPPRQHLPA HEKMAQRRSS FSSQSMNSQS VGQSLTQPVM BACU002241/1-326 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000308741/1-846 SQATNLPIPQ GMSQFQFSAQ LGAMQHLKDQ LEQRTRMIEA NIHRQQEELR ENSBTAP00000053232/1-846 SQSANLPVPH GMSQFQFSAQ LGAMQHLKDQ LEQRTRMIEA NIHRQQEELR ENSTTRP00000000904/1-845 SQAANLPVPQ GMSQFQFSAQ LGAMQHLKDQ LEQRTRMIEA NIHRQQEELR bmy_09828T0/1-849 SQAANLPVPQ GMSQFQFSAQ LGAMQHLKDQ LEQRTRMIEA NIHRQQEELR BACU002241/1-326 ---------- ---------- ---MQHLKDQ LEQRTRMIEA NIHRQQEELR 551 600 ENSP00000308741/1-846 KIQEQLQMVH GQGLQMFLQQ SNPGLNFGSV QLSSGNSSNI QQLAPINMQG ENSBTAP00000053232/1-846 KIQEQLQMVH GQGLQMFLQQ STPGLNFGSV QLSSGNSSNI QQLAPINMQS ENSTTRP00000000904/1-845 KIQEQLQMVH GQGLQMFLQQ STPGLNFGSV QLSSGNSSNI QQLAPINMQS bmy_09828T0/1-849 KIQEQLQMVH GQGLQMFLQQ STPGLNFGSV QLSSGNSSNI QQLAPINMQS BACU002241/1-326 KIQEQLQMVH GQGLQMFLQQ STPGLNFGSV QLSSGNSSNI QQLAPINMQS 601 650 ENSP00000308741/1-846 QVVPTNQIQS GMNTGHIGTT QHMIQQQTLQ STST-QSQQN VLSGHSQQTS ENSBTAP00000053232/1-846 QVVQTNQIQS GMNTGHIGTT QHMIQQQTLQ STSSQQSQQN VLSGHSQQTS ENSTTRP00000000904/1-845 QVVQTNQIQS GMNTGHIGTT QHMIQQQTLQ STSS-QNQQN VLSGHSQQTS bmy_09828T0/1-849 QVVQTNQIQS GMNTGHIGTT QHMIQQQTLQ STSSQQNQQN VLSGHSQQTS BACU002241/1-326 QVVQTNQIQS GMNTGHIGTT QHMIQQQTLQ STSSQQNQQN VLSGHSQQTS 651 700 ENSP00000308741/1-846 LPSQTQSTLT APLYNTMVIS QPAAGSMVQI PSSMPQNSTQ SAAVTTFTQD ENSBTAP00000053232/1-846 LPSQTQSTLT APLYNTMVIS QPAAGSMVQI PSSLPQNSSQ SAAVTTFTQD ENSTTRP00000000904/1-845 PPSQTQSTLT APLYNTMVIS QPTAGSMVQI PSSMPQNSSQ SAAVTTFTQD bmy_09828T0/1-849 LPSQTQSTLT APLYNTMVIS QPTAGSMVQI PSSMAQNSSQ SAAVTTFTQD BACU002241/1-326 LPSQTQSTLT APLYNTMVIS QPTAGSMVQI PSSMPQNSSQ SAAVTTFTQD 701 750 ENSP00000308741/1-846 RQIRFSQGQQ LVTKLVTAPV ACGAVMVPST MLMGQVVTAY PTFATQQQQS ENSBTAP00000053232/1-846 RQIRFSQGQQ LVTKLVTAPV ACGAVMVPSA MLMGQVVTAY PTFAPQQPQS ENSTTRP00000000904/1-845 RQIRFSQGQQ LVTKLVTAPV ACGAVVVPSA MLMGQVVTAY PTFAPQPPQS bmy_09828T0/1-849 RQIRFSQGQQ LVTKLVTAPV ACGAVVVPSA MLMGQVVTAY PTFAPQAPQS BACU002241/1-326 RQIRFSQGQQ LVTKLVTAPV ACGAVVVPSA MLMGQVVTAY PTFAPQAPQS 751 800 ENSP00000308741/1-846 QTLSVT---Q QQQQQSSQEQ QLTSVQQPSQ AQLTQPPQQF LQTSRLLHGN ENSBTAP00000053232/1-846 QTLSVT---- -QQQQSSQEQ PLPSVQQPSQ AQLTQPPQQF LQTSRLLHGN ENSTTRP00000000904/1-845 QTLPVP---- QQQQQSSQEQ QLPAVQQPPQ AQLAQPPQQF LQTSRLLHGN bmy_09828T0/1-849 QTLPVTQQQQ QQQQQSSQEQ QLPAVQQPPQ AQLAQPPQQF LQTSRLLHGN BACU002241/1-326 QTLPVT--PQ QQQQQSSQEQ QLPAVQQPPQ AQLAQPPQQF LQTSRLLHGN 801 850 ENSP00000308741/1-846 PSTQLILSAA FPLQQSTFPQ SHHQQHQSQQ QQQLSRHRTD SLPDPSKVQP ENSBTAP00000053232/1-846 PSTQLILSAA FPLQQSTFPQ SHHQQHQSQQ QQQLSRHRTE SLTDPSKVQP ENSTTRP00000000904/1-845 PSTQLILSAA FPLQQSTFPQ SHHQQHQSQQ QQQLNRRTTD SLTDPSKVQP bmy_09828T0/1-849 PSTQLILSAA FPLQQSTFPQ SHHQQHQSQQ QQQLNRRRTD SLTDPSKVQP BACU002241/1-326 PSTQLILSAA FPLQQSTFPQ SHHQQHQSQQ QQQLNRRRTD SLTDPSKVQP 851 900 ENSP00000308741/1-846 Q ENSBTAP00000053232/1-846 Q ENSTTRP00000000904/1-845 Q bmy_09828T0/1-849 Q BACU002241/1-326 Q