KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:03:07 2014 Check: 00 .. Name: ENSP00000306822/1-362 Len: 364 Check: 3212 Weight: 1.00 Name: ENSBTAP00000053243/1-355 Len: 364 Check: 9304 Weight: 1.00 Name: bmy_17694T0/1-220 Len: 364 Check: 5873 Weight: 1.00 Name: ENSTTRP00000006843/1-353 Len: 364 Check: 3446 Weight: 1.00 // 1 50 ENSP00000306822/1-362 MQAERGARGG RGRRPGRGRP GGDRHSERPG AAAAVARGGG GGGGGDGGGR ENSBTAP00000053243/1-355 MQAERGARGG RGRRPGRGRP GGDRDRERAG AGTAVARGGG GDGGGR---- bmy_17694T0/1-220 MFFLF----- ----PGDSFS Q--------- ---------- ---------- ENSTTRP00000006843/1-353 MQAERGARGG RGRRPGRGWP TGDRDRERAG APAAVARGGG GDGGGR---- 51 100 ENSP00000306822/1-362 RGRGRGRGFR GARGGRGGGG APRGSRREPG GWGAGASAPV EDDSDAETYG ENSBTAP00000053243/1-355 --RGRGRGFR GGRGGRGGGA -PRGGRREPG GWGARTSEPI EDDSDAETYG bmy_17694T0/1-220 --------FR FA-------- -------EEK EW-------- ---------- ENSTTRP00000006843/1-353 --RGRGRGFR GSRGGRGGGG -LRGGRREPR GWGAGASAPV EDDSDAETYG 101 150 ENSP00000306822/1-362 EENDEQGNYS KRKIVSNWDR YQDIEKEVNN ESGESQRGTD FSVLLSSAGD ENSBTAP00000053243/1-355 EENEEQGNYS KRKIVSNWDR YQDTEKEVDN ESGESQRGTD FSVLLSSAGD bmy_17694T0/1-220 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006843/1-353 EENEEQGNYS KRKIVSNWDR YQDTEKEVDN ESGESQRGTD FSVLLSSAGA 151 200 ENSP00000306822/1-362 SFSQFRFAEE --KEWDSEAS CPKQNSAFYV DSELLVRALQ ELPLCLRLNV ENSBTAP00000053243/1-355 SFSQFRFAEE --KEWDGEAS CPKQNSAFYV DCESLVRALQ ELPLSLRLNV bmy_17694T0/1-220 ---------- -----DSEAS CPKQNSAFYV DCESLVRALQ ELPLSLRLNV ENSTTRP00000006843/1-353 IKKCKRKAGQ AMENWEPYAW ----NSAFYV DCESLVRALQ ELPLSLRLNV 201 250 ENSP00000306822/1-362 AAELVQGTVP LEVPQVKPKR TDDGKGLGMQ LKGPLGPGGR GPIFELKSVA ENSBTAP00000053243/1-355 AAELVQTALP LELPQVKPKR NNDGKGLGMQ LKGPSGPGGK GSLSEMKSTT bmy_17694T0/1-220 AAELVQTALP LELPQVKPKR NNDGRGLGMQ LKGPLGPGGK GSIPELKSAA ENSTTRP00000006843/1-353 AAELVQTALP LELPQVKPKR NNDGKGLGMQ LKGPLGPGGK GSISELKSAA 251 300 ENSP00000306822/1-362 AGCPVLLGKD NPSPGPSRDS QKPTSPLQSA GDHLEEELDL LLNLDAPIKE ENSBTAP00000053243/1-355 TGFPVYPGKD GPGSGPSKGC QNPTSLLQLA ADHLEEELDL LLNLDAPVKE bmy_17694T0/1-220 AGCPMYLGKD SLGPGPSKGS QNPXSPLQSA ADDLEEELDL LLNLDASVKE ENSTTRP00000006843/1-353 AGCPMYLGKD SLGPGPSKGS QNPASPLQSA ADDLEEELDL LLNLDASVKE 301 350 ENSP00000306822/1-362 GDNILPDQTS QDLKSKEDGE VVQEEEVCAK PSVTEEKNME PEQPSTSKNV ENSBTAP00000053243/1-355 GGDILSDQTA QDLESEKRGD LVQAAAEPAN PFVLEEKNVT SGQPSISRNV bmy_17694T0/1-220 RGDILADQTA QDLESEKDEE VAQEETDPAK PSALEEKNVA SEQPSISRNV ENSTTRP00000006843/1-353 SGDILADQTA QDLESEKDEE VAQEETDPAK PSALEGKNVA SEQPSISRNV 351 400 ENSP00000306822/1-362 TEEELEDWLD SMIS ENSBTAP00000053243/1-355 TEEELEDWLD SMIS bmy_17694T0/1-220 TEEELEDWLD SMIS ENSTTRP00000006843/1-353 TEEELEDWLD SMIS