KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:08 2014 Check: 00 .. Name: ENSP00000457991/1-1323 Len: 1327 Check: 3809 Weight: 1.00 Name: ENSBTAP00000053245/1-1323 Len: 1327 Check: 1693 Weight: 1.00 Name: ENSTTRP00000000151/1-1318 Len: 1327 Check: 8032 Weight: 1.00 Name: bmy_19148T0/1-1240 Len: 1327 Check: 4096 Weight: 1.00 Name: BACU018163/1-1319 Len: 1327 Check: 9685 Weight: 1.00 // 1 50 ENSP00000457991/1-1323 MKRNGSRNCL NRRSRFGSRE RDWLREDVKR GCVYLYGADT TTATTTTTTS ENSBTAP00000053245/1-1323 MKRNGSRNCL NRRSRFGSRE RDWLREDVKR GCVYLYGADT TTATTTTT-- ENSTTRP00000000151/1-1318 MKRNGSRHCL NRRSRFGSRE RDWLREDVKR GCVYLYGADT ATATAAST-- bmy_19148T0/1-1240 MKRNGSRHCL NRRSRFGSRE RDWLREDVKR GCVYLYGADT ATATAASA-- BACU018163/1-1319 MKRNGSRHCL NRRSRFGSRE RDWLREDVKR GCVYLYGADT ATATAVSA-- 51 100 ENSP00000457991/1-1323 SSSSSSSSSS DLHLVLCTVE TPASEICAGE GRESLYLQLH GDLV-RRLEP ENSBTAP00000053245/1-1323 --SSASSSSS DLHLVLCTVE TPASEICAGE GRESLYLQLH GDLVSRRLEP ENSTTRP00000000151/1-1318 ---SATASSS DLHLVLCTVD TPASEICAGE GRERLYLQLH GDLV-RRLEP bmy_19148T0/1-1240 --SSAASSSS DLHLVLCTVD TPVSEICAGE GREHLYLQLH GDLV-RRLEP BACU018163/1-1319 --SSAASSSS DLHLVLCTVD TPTSEICAGE GRERLYLQLH GDLV-RRLEP 101 150 ENSP00000457991/1-1323 TERPLQIVYD YLSRLGFDDP VRIQEEATNP DLGCMIRFYG EKPCHMDRLD ENSBTAP00000053245/1-1323 TERPLQIVYD YLSRLGFDDP ARIQEEAANP DLGCMLRFYG EKPCQMDHLD ENSTTRP00000000151/1-1318 TERPLQIVYD YLSRLGFDDP VRIQEEAANP DLGCMLRFYG EKPCQMDHLD bmy_19148T0/1-1240 TERPLQIVYD YLSGLGFDDP VRIQEEAANP DLGCMLRFYG EKPCQMDHLD BACU018163/1-1319 TERPLQIVYD YLSGLGFDDP VRIQEEAANP DLGCMLRFYG EKPCQMDHLD 151 200 ENSP00000457991/1-1323 RILLSGIYNV RKGKTQLHKW AERLVVLCGT CLIVSSVKDC QTGKMHILPL ENSBTAP00000053245/1-1323 RILLSGIYNV RKGKTQLHKW AERLVVLCGT CLIVSSVKDC QTGKMHILPL ENSTTRP00000000151/1-1318 RILLSGIYNV RKGKTQLHKW AERLVVLCGT CLIVSSVKDC QTGKMHILPL bmy_19148T0/1-1240 RILLSGIYNV RKGKTQLHKW AERLVVLCGT CLIVSSVKDC QTGKMHILPL BACU018163/1-1319 RILLSGIYNV RKGKTQLHKW AERLVVLCGT CLIVSSVKDC QTGKMHILPL 201 250 ENSP00000457991/1-1323 VGGKIEEVKR RQYSLAFSSA GAQAQTYHVS FETLAEYQRW QRQASKVVSQ ENSBTAP00000053245/1-1323 VGGKVEEVKR RQYSLAFSSA GAQAQTYLVS FETLAEYQRW QRQASKVVSQ ENSTTRP00000000151/1-1318 VGGKVEEVKR RQYCLAFSSA GAQAQTYHVS FETLAEYQRW QRQSSKVVSQ bmy_19148T0/1-1240 VGG------- ---------- ---------- ---------- -----KVVSQ BACU018163/1-1319 VGGKVEEVKR RQYCLAFSSA GAQAQTYHVS FETLAEYQRW QRQSSKVVSQ 251 300 ENSP00000457991/1-1323 RISTVDLSCY SLEEVPEHLF YSQDITYLNL RHNFMQLERP GGLDTLYKFS ENSBTAP00000053245/1-1323 RISTVDLSCH SLEEVPEHLF YSQDITYLNL RHNFMQLERP GGLDTFYKFS ENSTTRP00000000151/1-1318 RISTVDLSCH SLEEVPEHLF YSQDITYLNL RHNFMQLERP GGLDTFYKFS bmy_19148T0/1-1240 RISTVDLSCH SLEEVPEHLF YSQDITYLNL RHNFMQLERP GGLDTFYKFS BACU018163/1-1319 RISTVDLSCH SLEEVPEHLF YSQDITYLNL RHNFMQLERP GGLDTFYKFS 301 350 ENSP00000457991/1-1323 QLKGLNLSHN KLGLFPILLC EISTLTELNL SCNGFHDLPS QIGNLLNLQT ENSBTAP00000053245/1-1323 QLKGLNLSHN KLGSFPVLLC EIPTLTELNL SCNGFHDLPS QIGSLLNLQT ENSTTRP00000000151/1-1318 QLKGLNLSHN KLGSFPVLLC EISTLTELNL SCNGFHDLPS QIGNLLNLQT bmy_19148T0/1-1240 QLKGLNLSHN KLGSFPVLLC EISTLTELNL SCNGFHDLPS QIGNLLNLQT BACU018163/1-1319 QLKGLNLSHN KLGSFPVLLC EISTLTELNL SCNGFHDLPS QIGNLLNLQT 351 400 ENSP00000457991/1-1323 LCLDGNFLTT LPEELGNLQQ LSSLGISFNN FSQIPEVYEK LTMLDRVVMA ENSBTAP00000053245/1-1323 LCLDGNFLTA LPEELGNLQQ LSSLGISFNN FSQIPEVYEK LTMLDKVFMA ENSTTRP00000000151/1-1318 LCLDGNFLTT LPEELGNLQQ LSSLGISFNN FSQIPKVYEK LTMLDKVVMA bmy_19148T0/1-1240 LCLDGNFLTT LPEELGNLQQ LSSLGISFNN FSQIPKVYEK LTMLDKVVMA BACU018163/1-1319 LCLDGNFLTT LPEELGNLQQ LSSLGISFNN FSQIPKVYEK LTMLDKVVMA 401 450 ENSP00000457991/1-1323 GNCLEVLNLG VLNRMNHIKH VD---LRMNH LKTMVIENLE GNKHITHVDL ENSBTAP00000053245/1-1323 GNRVEVLNLG VLKRMSHVKH VDLRILRMNH LKTMIIENLE GNKYITHMDL ENSTTRP00000000151/1-1318 GNQLEVLNLE VLNCMSHVKH VD---LRMNH LKTMVIENLE GNKYITHMDL bmy_19148T0/1-1240 GNQLEVLNLG VLNCMSHVKH VD---LRMNH LKTMVIENLE GNKYITHMDL BACU018163/1-1319 GNQLEVLNLG VLNCMSHVKH VD---LRMNH LKTMVIENLE GNKYITHMDL 451 500 ENSP00000457991/1-1323 RDNRLTDLDL SSLCSLEQLH CGRNQLRELT LSGFSLRTLY ASSNRLTAVN ENSBTAP00000053245/1-1323 RDNRLTDLDL SSLCNLEQLH CERNQLRELT LSGFSLRTLY ANSNRLTTVN ENSTTRP00000000151/1-1318 RDNQLTDLDL SSLCSLEQLH CERNQLRELT LSGFSLRTLY ANSNRLTAVN bmy_19148T0/1-1240 RDNRLTDLDL SSLCSLEQLH CERNQLRELT LSGFSLRTLY ASSNRLTAVN BACU018163/1-1319 RDNRLTDLDL SSLCNLEQLH CERNQLRELT LSGFSLRTLY ASSNRLTAVN 501 550 ENSP00000457991/1-1323 VYPVPSLLTF LDLSRNLLEC VPDWACEAKK IEVLDVSYNL LTEVPVRILS ENSBTAP00000053245/1-1323 VYPVPSLLTS LELSRNLLEC VPDWACEAKK IEILDVSYNL LTEVPMRILS ENSTTRP00000000151/1-1318 VYPVPSLLTS LELSRNLLEC VPDWACEAKK IEILDVSYNL LTEIPMRILS bmy_19148T0/1-1240 VYPVPSLLTS LELSRNLLEC VPDWACEAKK IEILDVSYNL LTEIPMRILS BACU018163/1-1319 VYPVPSLLTS LELSRNLLEC VPDWACEAKK IEILDVSYNL LTEIPMRILS 551 600 ENSP00000457991/1-1323 SLSLRKLMLG HNHVQNLPTL VEHIPLEVLD LQHNALTRLP DTLFSKALNL ENSBTAP00000053245/1-1323 SLSLRKLMVG HNHVQSLPTL VEHIPLEVLD VQHNLLTRLP DTLFSKALNL ENSTTRP00000000151/1-1318 SLSLRKLMVG HNHVQNLPAL VEHIPLEVLD IQHNLLTRLP DTLFSKALNL bmy_19148T0/1-1240 SLSLRKLMVG HNHVQNLPVL VEHIPLEVLD IQHNLLTRLP DTLFSKALNL BACU018163/1-1319 SLSLRKLMVG HNHVQNLPAL VEHIPLEVLD IQHNLLTRLP DTLFSKALNL 601 650 ENSP00000457991/1-1323 RYLNASANSL ESLPSACTGE ESLSMLQLLY LTNNLLTDQC IPVLVGHLHL ENSBTAP00000053245/1-1323 RYLNASANSL ESLPSACAGE ESLSALQLLY LTNNLLTDQC VPVLVGHPHL ENSTTRP00000000151/1-1318 RYLNASANSL ESLPSACTGE ESLSALQLLY LTNNLLTDQC VPVLVGHPHL bmy_19148T0/1-1240 RYLNASANSL ESLPSACTGE ESLSALQLLY LTNNLLTDQC VPVLVGHPHL BACU018163/1-1319 RYLNASANSL ESLPSACTGE ESLSALQLLY LTNNLLTDQC VPVLVGHPHL 651 700 ENSP00000457991/1-1323 RILHLANNQL QTFPASKLNK LEQLEELNLS GNKLKTIPTT IANCKRLHTL ENSBTAP00000053245/1-1323 RILHLANNQL QTFPASKLNK LEQLEELNLS GNKLKTIPTT IANCKRLHTL ENSTTRP00000000151/1-1318 RILHLANNQL QTFPASKLNK LEQLEELNLS GNKLKTIPTT IANCKRLHTL bmy_19148T0/1-1240 RILHLANNQL QTFPASKLNK LEQLEELNLS GNKLKTIPTT IANCKRLHTL BACU018163/1-1319 RILHLANNQL QTFPASKLNK LEQLEELNLS GNKLKTIPTT IANCKRLHTL 701 750 ENSP00000457991/1-1323 VAHSNNISIF PEILQLPQIQ FVDLSCNDLT EILIPEALPA TLQDLDLTGN ENSBTAP00000053245/1-1323 VAHSNHISIF PEILQLPQIQ FVDLSCNDLT EILIPEALPA TLQDLDLTGN ENSTTRP00000000151/1-1318 VAHSNHISIF PEILQLPQIQ FVDLSCNDLT EILIPESLPA TLQDLDLTGN bmy_19148T0/1-1240 VAHSNHISIF PEILQLPQIQ FVDLSCNDLT EILIPEALPA TLQDLDLTGN BACU018163/1-1319 VAHSNHISIF PEILQLPQIQ FVDLSCNDLT EILIPEALPA TLQDLDLTGN 751 800 ENSP00000457991/1-1323 TNLVLEHKTL DIFSHITTLK IDQKPLPTTD STVTSTFWSH GLAEMAGQRN ENSBTAP00000053245/1-1323 TNLVLEHKTL DTFSHITTLK IDQKPLPTTD STVTSTFWSH GLAEMAGQRN ENSTTRP00000000151/1-1318 TNLVLEHKTL DTFSHITPLK IDQKPLPTTD STVTSTFWSH GLAEMAGQRN bmy_19148T0/1-1240 TNLVLEHKTL DTF------- ---------- ---------- ---------- BACU018163/1-1319 TNLVLEHKTL DTFSHITTLK IDQKPLPTTD STVTSTFWSH GLAEMAGQRN 801 850 ENSP00000457991/1-1323 KLCVSALAMD SFAEGVGAVY GMFDGDRNEE LPRLLQCTMA DVLLEEVQQS ENSBTAP00000053245/1-1323 KLCVSALAVD NFAEGVGAVY GMFDGDRNEE LPRLLQCTMA DVLLEEVQQS ENSTTRP00000000151/1-1318 KLCISALAVD NFAEGVGAVY GMFDGDRNEE LPRLLQCTMA DVLLEEVQQS bmy_19148T0/1-1240 RLCVSALAVD NFAEGVGAVY GMFDGDRNEE LPRLLQCTMA DVLLEEVQQS BACU018163/1-1319 KLCVSALAVD NFAEGVGAVY GMFDGDRNEE LPRLLQCTMA DVLLEEVQQS 851 900 ENSP00000457991/1-1323 TNDTVFMANT FLVSHRKLGM AGQKLGSSAL LCYIRPDTAD PASSFSLTVA ENSBTAP00000053245/1-1323 TNDTVFMANT FLVSHRKLGM AGQKLGCSAL LCYIRPDTAD PMNSFSLTVA ENSTTRP00000000151/1-1318 TNDTVFMAHT FLVSHRKLGM AGQKLGSSAL LCYIRPDTAD PTSSFSLTVA bmy_19148T0/1-1240 TNDTVFMAHT FLVSHRKLGM AGQKLGSSAL LCYIRPDTAD PTSSFSLTVA BACU018163/1-1319 TNDTVFMAHT FLVSHRKLGM AGQKLGSSAL LCYIRPDTAD PTSSFSLTVA 901 950 ENSP00000457991/1-1323 NVGTCQAVLC RGGKPVPLSK VFSLEQDPEE AQRVKDQKAI ITEDNKVNGV ENSBTAP00000053245/1-1323 NVGTCQAVLC RGGKPVPLSK VFSLEQDPEE AQRVKDQKAI ITEDNKVNGV ENSTTRP00000000151/1-1318 NVGTCQAVLC RSGKPLPLSK VFSLEQDPEE AQRVKDQKAI ITEDNKVNGV bmy_19148T0/1-1240 NVGTCQAVLC RSGKPVPLSK VFSLEQDPEE AQRVKDQKAI ITEDNKVNGV BACU018163/1-1319 NVGTCQAVLC RSGKPVPLSK VFSLEQDPEE AQRVKDQKAI ITEDNKVNGV 951 1000 ENSP00000457991/1-1323 TCCTRMLGCT YLYPWILPKP HISSTPLTIQ DELLILGNKA LWEHLSYTEA ENSBTAP00000053245/1-1323 TCCTRLLGCT YLYPWILPKP HISSTPLTIQ DELLILGNKA LWEHLSYTEA ENSTTRP00000000151/1-1318 TCCTRLLGCT YLYPWILPKP HISSTPLTIQ DELLILGNKA LWEHLSYTEA bmy_19148T0/1-1240 TCCTRLLGCT YLYPWILPRP HISSTPLTIQ DELLILGNRA LWEHLSYTEA BACU018163/1-1319 TCCTRLLGCT YLYPWILPRP HISSTPLTIQ DELLILGNKA LWEHLSYTEA 1001 1050 ENSP00000457991/1-1323 VNAVRHVQDP LAAAKKLCTL AQSYGCQDNV GAMVVYLNIG EEGCTCEMNG ENSBTAP00000053245/1-1323 VNAVRHVQDP LAAAKKLCTL SQSYGCQDNV GAMVVYLNIG EEGCTCEMNG ENSTTRP00000000151/1-1318 VNAVCHVQDP LAAAKKLCTL AQSYGCQDNV GAMVVYLNVG EEGCTCEMNG bmy_19148T0/1-1240 VNAVCHVQDP LAAAKKLCTL AQSYGCQDNV GAMVVYLNVG EEGCTCEMNG BACU018163/1-1319 VNAVCHVQDP LAAAKKLCTL AQSYGCQDNV GAMVVYLNVG EEGCTCEMNG 1051 1100 ENSP00000457991/1-1323 LTLPGPVGFA STTTIKDAPK PATPSSSSGI ASEFSSEMST SEVSSEVGST ENSBTAP00000053245/1-1323 LTLPGPMGFA STTIIKDPPK PTTPSSSSGI ASEFSSEMST SEVSSEVGST ENSTTRP00000000151/1-1318 LTLPGPVGFA STAAIKDPPK PTTPSSSSGI ASEFSSEMST SEVSSEVGST bmy_19148T0/1-1240 LTLPGPVGFA STAVIKDPPK PTTPSSSSGV ASEFSSEMST SEVSSEVGST BACU018163/1-1319 LTLPGPVGFA STAVIKDPPK PTTPSSSSGV ASEFSSEMST SEVSSEVGST 1101 1150 ENSP00000457991/1-1323 ASDEHNAGGL DTALLPRPER RCSLHPTPTS GLFQRQPSSA TFSSNQSDNG ENSBTAP00000053245/1-1323 ASDEHNTVGL DAGLLPRPER RCSLHPAPTS GVFQRQPSCA TFSSNQSDNG ENSTTRP00000000151/1-1318 ASDEHNTVGL DAALLSRPER RCSLHPTPTS GVFQRQPSCA TFSSNQSDNG bmy_19148T0/1-1240 ASDEHNTVGL DAGLLSRPER RCSLHPTPTS GVFQRQPSCA TFSSNQSDNG BACU018163/1-1319 ASDEHNTVGL DAGLLSRPER RCSLHPTPTS GVFQRQPSCA TFSSNQSDNG 1151 1200 ENSP00000457991/1-1323 LDSDDDQPVE GVITNGSKVE VEVDIHCCRG RDLENSPPLI ESSPTLCSEE ENSBTAP00000053245/1-1323 LDSDDDQPVE GVITNGSKVE VEVDIHCCRG RDLENSPTLP ENSPAPCPED ENSTTRP00000000151/1-1318 LDSDDDQPVE GVMTNGSKVE VEVDIHCCRG RQLENSPTLR ENFPIPCLEE bmy_19148T0/1-1240 LDSDDDQPVE GVMTNGSKVE VEVDIHCCRG RQLENSPALR ENSPTPCLEE BACU018163/1-1319 LDSDDDQPVE GVMTNGSKVE VEVDIHCCRG RQLENSPTLR GNSPTPCLEE 1201 1250 ENSP00000457991/1-1323 HARGSCFGIR RQNSVNSGML LPMSKDRMEL QKSPSTSCLY GKKLSNGSIV ENSBTAP00000053245/1-1323 RSRGSLFGIR RQNSVNSGIL LPVSKDRTEL QKSPSTSCLY GKKLSNGSIV ENSTTRP00000000151/1-1318 RARGLVFGIR RQNSVNSGIL LPVSKDKTEL QKSPSTSCLY RKKLSNGSIV bmy_19148T0/1-1240 RARGLAFGIR RQNSVNSGIL LPVRKDKTEL QKSPSTSCLY GKKLSNGSIV BACU018163/1-1319 RARGLAFGIR RQNSVNSGIL LPVSKDKMEL QKSPSTSCLY GKKLSNGSIV 1251 1300 ENSP00000457991/1-1323 PLEDSLNLIE VATEVPKRKT GYFAAPTQME PEDQFVVPHD LEEEVKEQMK ENSBTAP00000053245/1-1323 PLEDSLNLIE VATEAPKKKT GYFAAPTQLE PEDQFVIPRD LEEEVKEQMK ENSTTRP00000000151/1-1318 PLEDSLNLIE VATEAPRKKT GYFAAPAQLE PEDQFVVPRD LEEEVKEQMK bmy_19148T0/1-1240 PLEDSLNLIE VATEAPRKKT GYFAAPAQLE PEDQFVVPXD LEEEVKEQMK BACU018163/1-1319 PLEDSLNLIE VATEAPRKKT GYFAAPAQLE PEDQFVVPRD LEEEVKEQMK 1301 1350 ENSP00000457991/1-1323 QHQDSRLEPE PHEEDRTEPP EEFDTAL ENSBTAP00000053245/1-1323 HHQESRHEPE PSEEDRTELP EEFDTAL ENSTTRP00000000151/1-1318 HHQESRPEPD SSEEGRTELA EEFDTAL bmy_19148T0/1-1240 HHQESRPEPE PSEEGRTELA EEFDTAL BACU018163/1-1319 HHQESRPEPE PSEEGRTELA EEFDTAL