KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:10 2014 Check: 00 .. Name: ENSP00000373752/1-592 Len: 611 Check: 3807 Weight: 1.00 Name: ENSBTAP00000053251/1-591 Len: 611 Check: 2152 Weight: 1.00 Name: ENSTTRP00000015852/1-589 Len: 611 Check: 3523 Weight: 1.00 Name: bmy_14876T0/1-391 Len: 611 Check: 3219 Weight: 1.00 Name: BACU006233/1-513 Len: 611 Check: 7851 Weight: 1.00 // 1 50 ENSP00000373752/1-592 ---------- ---------M KRSKELITKN HSQEETSILR CWKCRKCIAS ENSBTAP00000053251/1-591 ---------- ---------M KRSKELVTKN HNQEDISILR CWKCRKCIAS ENSTTRP00000015852/1-589 ---------- ---------M KRNKELITKN HNQEEISILR CWKCRKCIAG bmy_14876T0/1-391 MIANWVYHDV DSVIPKKRGM KRSKELITKN HNQEEISILR CWKCRKCIAG BACU006233/1-513 ---------- ---------M KRSKELITKN HNQEEISILR CWKCRKCVAG 51 100 ENSP00000373752/1-592 SGCFMEYLEN QVIKDKDDSV DAQNICHVWH MNVEALPEWI SCLIQKAQWT ENSBTAP00000053251/1-591 SGCFMEYLEN QVTKNTNDSA DDENICHVWH MNIEALPEWI HCLIQKAQWT ENSTTRP00000015852/1-589 SGCFMECLEN QVTKDRHDSA DDQNICHVWH MDVEALPEWI HCLIQKAQWT bmy_14876T0/1-391 SGCFMECLEH QVT------- ---------- ---------- -----KAQWT BACU006233/1-513 SGCFMECLEH QVTKDRHDSA DDQNICHVWH MDIEALPEWI HCLIQKAQWT 101 150 ENSP00000373752/1-592 VGKLNCPFCG ARLGGFNFVS TPKCSCGQLA AVHLSKSRTD YQPTQAGRLM ENSBTAP00000053251/1-591 VGKLNCPFCG ARLGGFNFVS TPKCSCGQLA AVHLSKSRTD YQPTRSGRLM ENSTTRP00000015852/1-589 VGKLNCPFCG ARLGGFNFVS TPKCSCGQLA AVHLSKSRTD YQPTRSGRLM bmy_14876T0/1-391 VGKLNCPFCG ARLGGFNFVS TPKCSCGQLA AVHLSKSRTD YQPTQSGRLM BACU006233/1-513 VGKLNCPFCG ARLGGFNFVS TPKCSCGQLA AVHLSKSRTD YQPTRSGRLM 151 200 ENSP00000373752/1-592 RPSVKYLSHP RVQSGCDKEA LLTGGGSENR NHRLLNMARN NNDPGRLTEA ENSBTAP00000053251/1-591 RPSLKYLSHP RVQSGCDKET LLTGGASRNR NHRFLNMGPN NNGPGRLTEA ENSTTRP00000015852/1-589 RPSLKYLSHP RVQSGCDKET LLRGDASKNR NHGLLNMAQN NNGPGRLTEA bmy_14876T0/1-391 RPSLKYLSHP RVQSGCDKET LLTGGASKNR NHGLLNMAQN NNGPGRLTEA BACU006233/1-513 RPSLKYLSHP RVQSGCDKET LLTGGASKNR NHGLLNMAQN NNGPGRLTEA 201 250 ENSP00000373752/1-592 LCLEVRPTYF EMKNEKLLSK ASEPKYQLFV PQLVTGRCAT RAFHRKSHSL ENSBTAP00000053251/1-591 LCLEVRSTYF KMKNEKLLFK ASDPKYQLFV PQLVTTRCAP RAFHRKSHSL ENSTTRP00000015852/1-589 LCLEVRSTYF KMKNEKLLFK A-DPKCQLLV PQLVTGRCTT KAFHRKSHSL bmy_14876T0/1-391 LCLEVRSTYF KMKNEKLLFK ASDPKYQLFV PQLVTGRCTT RAFHRKSRSL BACU006233/1-513 LCLEVRSTYF KMKNEKLLFK ASDPKYQLFV PQLVTGRCTT RAFHRKSHSL 251 300 ENSP00000373752/1-592 DLNISEKLTL LPTLYEIHSK TTAYSRLNET QPIDLSGLPL QSSKNSYSFQ ENSBTAP00000053251/1-591 DLSISEKLTL LPTLYEIHSK TTVYPGLNET QTVDLPSLPL ESNKNNCSFQ ENSTTRP00000015852/1-589 DLDISEKLTL LPTLYEIHSK TTVYPRLNET QPIDLSGLPL ESSKNNRSFQ bmy_14876T0/1-391 DLNISEKLTL LPTLYEIHSK TTVYPRLNET QPVDLSGLPL ESSKNNRSFQ BACU006233/1-513 DLNISEKLTL LPTLYEIHSK TTVYPRLNET QPVDLSGLPL ESSKNNRSFQ 301 350 ENSP00000373752/1-592 NPSSFDPSML LQRFSVAPHE TQTQRGGEFQ CGLEAASVYS DHTNTNNLTF ENSBTAP00000053251/1-591 ISSSFDPNML LQRFSVAPRE TQTQRGGEFQ RGLEASAVYS GHGSPNSLTF ENSTTRP00000015852/1-589 ISSSFDPNML LQRFSVTPRE TQTQRGGEFQ CGLEASAVYS GHASSNNLTF bmy_14876T0/1-391 ISSSFDPNML LQRFSVAPRE TQTQRGGEFQ CGLEASAVYS GHASSNNLTF BACU006233/1-513 ISSSFDPNML LQRFSVAPRE TQTQRGGEFQ CGLEASAVYS GHASSNNLTF 351 400 ENSP00000373752/1-592 LMDLPSAGRS MPEASDQEEH LSPLDFLHSA NFSLGSINQR LNKRERSKLK ENSBTAP00000053251/1-591 LMDLPAAGRS TLEAEDQEEH LSPLNFLHSG SFSLGAINQR LSKREKSKLK ENSTTRP00000015852/1-589 LMDLPSAGRG TLEAPDQEEH LSPLDFLHSG SFSLGAINQR LSKREKSKLK bmy_14876T0/1-391 LMDMPSAGRS TLEAPDQEEH LSPLDFLHSG SFSLGAINQR LSKREKSKLK BACU006233/1-513 LMDMPSSGRS TLEAPDQEEH LSPLDFLHSG SFSLGAINQR LSKREKSKLK 401 450 ENSP00000373752/1-592 NLRRKQRRRE RWLQKQGKYS GVGLLDHMTL NNEMSTDEDN EYAEEKDSYI ENSBTAP00000053251/1-591 NLRRKQRRHE RWLQKQVIFN RVS-KPYITL DNEMSTDDDN EYAEEKESYI ENSTTRP00000015852/1-589 TLRRKQRRHE RWLQKQGKCP GVGLLDHMTL DNEMSTDDDN EYAEEKESYI bmy_14876T0/1-391 NLRRKQRRHE RWLQKQ---- ---------- ---------- ---------- BACU006233/1-513 NLRRKQRRHE RWLQKQGKCP GVGLLDHMTL DNEMSTDDDN EYAEEKESYI 451 500 ENSP00000373752/1-592 CAVCLDVYFN PYMCYPCHHI FCEPCLRTLA KDNPSSTPCP LCRTIISRVF ENSBTAP00000053251/1-591 CAVCLDVYFN PYMCYPCHHI FCEPCLRTLA KDNPASTPCP LCRTIISRVF ENSTTRP00000015852/1-589 CAVCLDVYFN PYMCYPCHHI FCEPCLRTLA KDNPASTPCP LCRTIISRVF bmy_14876T0/1-391 ---------- ---------- ---------- ---------- ---VIFKRVY BACU006233/1-513 CAVCLDVYFN PYMCYPCHHI FCEPCLRTLA KDNPASTPCP LCRTIISRVF 501 550 ENSP00000373752/1-592 FQTELNNATK TFFTKEYLKI KQSFQKSNSA KWPLPSCRKA FHLFGGFRRH ENSBTAP00000053251/1-591 FQTELNNATK TFFTKEYLKR KQSFQKSSSA KWPLPNCRKA FHLFGGFHRR ENSTTRP00000015852/1-589 FQTXXXXXXX XXXXXXXXXK KQSFQKSSSA KWPLPS-RKA FHI-GGFHRR bmy_14876T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU006233/1-513 FQTGNCCLSL TQLPDYF--- ---------- ---------- ---------- 551 600 ENSP00000373752/1-592 AAPVTRRQFP HGAHRMDYLH FEDDSRGWWF DMDMVIIYIY SVNWVIGFIV ENSBTAP00000053251/1-591 AAPVTRRQFP HGAHRMDYLH FEDDSRGWWF DMDMVIIYIY SVNWVIGFIV ENSTTRP00000015852/1-589 AAPVTRRQFP HGAHRMDYLH FEDDSRGWWF DMDMVIIYIY SVNWVIGFIV bmy_14876T0/1-391 ---------- ---------- ---------- ---------- ---------- BACU006233/1-513 ---------- ------DYLF VP-------- ----VLKVLY ELL------- 601 650 ENSP00000373752/1-592 FCFLCYFFFP F ENSBTAP00000053251/1-591 FCFLCYFFFP F ENSTTRP00000015852/1-589 FCFLCYFFFP F bmy_14876T0/1-391 ---------- - BACU006233/1-513 ---------- -