KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:03:15 2014 Check: 00 .. Name: ENSBTAP00000053257/1-1244 Len: 1323 Check: 4863 Weight: 1.00 Name: ENSTTRP00000004873/1-1245 Len: 1323 Check: 6693 Weight: 1.00 Name: bmy_01294T0/1-1309 Len: 1323 Check: 3366 Weight: 1.00 Name: BACU014418/1-1165 Len: 1323 Check: 6011 Weight: 1.00 // 1 50 ENSBTAP00000053257/1-1244 MNNQKAVATL LQECKQVLDQ LLLEASDVSE EDKR------ ---------- ENSTTRP00000004873/1-1245 MNNQKAVAVL LQECKQVLDQ LLLEASDVLE EDKR------ ---------- bmy_01294T0/1-1309 MPSPRKEQEM TFYVRNAPED PSTKRPSPGD KQKRRSPHFT PQTAPRQIQI BACU014418/1-1165 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000053257/1-1244 ---------- -----EDQRC RASLPSELRT LIQEAKEMKW PFVPEKWQYK ENSTTRP00000004873/1-1245 ---------- -----EDQRC RASLPSELRT LIQEAKEMKW PFVPEKWQYK bmy_01294T0/1-1309 AAAKSRVTAI WSPNWERSRA VHLPHSELRT LIQEAKEMKW PFVPEKWQYK BACU014418/1-1165 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000053257/1-1244 QAVGPEDKTN LQDVIGASLQ QLL------- ---------- ---------- ENSTTRP00000004873/1-1245 QAVGPEDKTN LQDVIGAGLE QLL------- ---------- ---------- bmy_01294T0/1-1309 QAVGPEDKTN LQDVIGACLE QLLVGRATPP VPLTPPKDYW SQDCLLFCPT BACU014418/1-1165 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000053257/1-1244 ------ASLK ASILARDCAT AAAIVFLSDR LLYGLDVSGQ LLQVAKALHR ENSTTRP00000004873/1-1245 ------ASLK ASILARECAT AAAIVFLSDR FLYGLDVSGE LLQVAQGLHK bmy_01294T0/1-1309 LFLFIQASLK ASILARECAT AAAIVFLSDR FLYGLDVSGE LLQVAKGLHK BACU014418/1-1165 ------ASLK ASILARECAT AAAIVFLSDR FLYGLDVSGE LLQVAKGLHK 201 250 ENSBTAP00000053257/1-1244 LQPATPIAPQ VVIRQARISM HAGKLLKAEY ILSSLISNNG ATGTWLYRNE ENSTTRP00000004873/1-1245 LQPATPIAPQ VVIRQARISM HSGKLLKAEY ILSSLISNSG ATGTWLYRNE bmy_01294T0/1-1309 LQPATPIAPQ VVIRQARISM HSGKLLKAEY ILSSLISNNG ATGTWLYRNE BACU014418/1-1165 LQPATPIAPQ VVIRQARISM HSGKLLKAEY ILSSLISNNG ATGTWLYRNE 251 300 ENSBTAP00000053257/1-1244 SDKVLVQSVC IQIRGQILQK LG----MWYE AAELIWAS-- -IMGY----- ENSTTRP00000004873/1-1245 SDKVLVQSVC IQIRGQILQK LG----MWYE AAELIWAS-- -IIGY----- bmy_01294T0/1-1309 SDKVLVQSVC IQIRGQILQK LG----MWYE AAELIWAS-- -IIGY----- BACU014418/1-1165 SDKVLVQSVC IQIRGQILQK LGFSVFFLAS GSQLIRTPSD IVTPYSKPTL 301 350 ENSBTAP00000053257/1-1244 LTLPQPDKKG ISTSLGILAD IFVSMSKKDY EKFKSNPDIN LGLLKEFDHH ENSTTRP00000004873/1-1245 LTLPQPDKKG ISTSLGILAD IFVSMSRKDY EKFKSNPEIN LGLLKEFDHH bmy_01294T0/1-1309 LTLPQPDKKG ISTSLGILAD IFVSMSRKDY EKFKSNPEIN LGLLKEFDHH BACU014418/1-1165 TAYPFAPGKG ISTSLGILAD IFVSMSRKDY EKFKSNPEIN LGLLKEFDHH 351 400 ENSBTAP00000053257/1-1244 LLSAAEACKL AAAFSPYTPL FVLTAMNIRG TCLLSYSSSE DCPPGMKNSY ENSTTRP00000004873/1-1245 LLSAAEACKL AAAFSPYTPL FVLTAMNIRG TCLLSYSSSN DCPPGMKNSY bmy_01294T0/1-1309 LLSAAEACKL AAAFSPYTPL FVLTAMNIRG TCLLSYSSSS DCRPGMKNSY BACU014418/1-1165 LLSAAEACKL AAAFSPYTPL FVLTAMNIRG TCLLSYSSSS DCPPGMKNSY 401 450 ENSBTAP00000053257/1-1244 LYEAKEAFEI GLLTKKRDEP VTGRQELHSF LKAAFGLTTV HQRLYGEMET ENSTTRP00000004873/1-1245 LCEAKEAFEI GLLTKKCDEP VTGKQELHSF LKAAFGLTTV HQRLYGEMET bmy_01294T0/1-1309 LREAKEAFEI GLLTKKCDEP VTGKQELHSF LKAAFGLTTV HQRLYGEMET BACU014418/1-1165 LCEAKEAFEI GLLTKKSDEP VTGKQELHSF LKAAFGLTTV HQRLYGEMET 451 500 ENSBTAP00000053257/1-1244 VRTASQLCSE AMGKLYTFSN SSRSQEREAV SQEIMSVITR VKEQLQVQSF ENSTTRP00000004873/1-1245 VHTASQLCSE AMGKLYTFST SSRSQEREAV SQEVMSLITR VKGQLQVQSF bmy_01294T0/1-1309 VHTASQLCSE AMGKLYTFST SSRSQEREAI SQEIMSVITR VKEQLQVQSF BACU014418/1-1165 VHTASQLCSE AMGKLYTFST SSRSQEREAI SQEIMSVITR VKEQLQVQSF 501 550 ENSBTAP00000053257/1-1244 SNLDDKSYVP EGFKRGLEKP ILHGQVDFPK ILEAYSQHHT SVCELFESTC ENSTTRP00000004873/1-1245 SNLDDKSYVP EGFKCGLEKP ILHGQVDFQK IIETYSQHHT SVCEIFESTC bmy_01294T0/1-1309 SNLDDKSYVP EGFKCGLEKP ILHGQVDFQK IVETYSQHHT SVCEIFESTC BACU014418/1-1165 SNLDDKSYVP EGFKCGLEKP ILHGQVDFQK ILETYSQHHT SVCEIFESTC 551 600 ENSBTAP00000053257/1-1244 GNNKNKQKGM KTGVCITDLK TETQNTDTVS ATEDKAHFEK GRVISSSRMA ENSTTRP00000004873/1-1245 GNNKNKQEGT KTGVCITDLK TETKNIDTVS TTEDKPRFEK GMVISASQMA bmy_01294T0/1-1309 GNNKNKQKGT KTGVCITDLK TETKNVDTVS TTEDKPHFEK GMVISSSQMA BACU014418/1-1165 GNNKNKQKGT KTGVCITDLK TETKNIDTVS TTEDKPRFEK GMVISSSQMA 601 650 ENSBTAP00000053257/1-1244 MNSQEKLRRA GRRNWAGSDA FRVSVDEDVE TEAESTDHSN GGGAVLNKSL ENSTTRP00000004873/1-1245 RNGWEKLRRV GRRNLASSDA FRVSVDEDVE TEAESTDHSS GGGAVLNKSL bmy_01294T0/1-1309 KNGWEKLRRV GRRNWAXSDA FRVSVDEDVE TEAESTDHRS GGGAVLNKSL BACU014418/1-1165 KNGWEKLRRV GRRNWAGSDA FRVSVDEDVE TEAESTDHSS GGGAVLNKSL 651 700 ENSBTAP00000053257/1-1244 SDSLSSSSWS QLSGYKSSTS WEEVNYHVDD MSAGRELSKE GHLVDTQCST ENSTTRP00000004873/1-1245 SDSQSSSSWS KLSGCSSSTS WEEVNYHVGD MSARREPSKE EHHVDTQCST bmy_01294T0/1-1309 SDSQSSSSWS KLSGCSSSTS WEEVNYHVDD MSARREPSKE EHHVDTQCST BACU014418/1-1165 SDSQSSSSWS KLSGGSSSTS WEEVNYHVDD MSARREPSKE ERHVDTRCST 701 750 ENSBTAP00000053257/1-1244 ALSDEQEVNG VSRAEHPLSS ELHGLSLQVP RDDRLESSQC QLHKSTPLAT ENSTTRP00000004873/1-1245 ALAEELEIDG GSRAVHPLSS ELHGLSLQVS RDDSLESSQS QLPKPMPLTT bmy_01294T0/1-1309 ALAEELEIDG ESRAVHPLSS ELHGLSLQVS RDDSLESSQS QLHKPVPLTT BACU014418/1-1165 APAEELEIDG ESRAVRPLSS ELHGLSLQVS RDDSLESSQS QLHKPVPLTT 751 800 ENSBTAP00000053257/1-1244 FPPHSTTGTS LASGGGWFK- --EGMQEVEN VGSRNTSAHS RPLFCSASWT ENSTTRP00000004873/1-1245 FPPHNTTGTL LASGAGLLKG APEGMWEAGN VGSRDTSAHS RPSFGSASWS bmy_01294T0/1-1309 FPPHNTAGTL LASGAGLLKG APEGMWEAGN VRSRNTSXHS RPSFGSASWS BACU014418/1-1165 FPPHNTAGTL LASGAGLLKG APEGMWEAGN VRSRNTSTHS RPSFGSASWS 801 850 ENSBTAP00000053257/1-1244 SDSGWPKNMT TYPSIQEEET FETIGEFQEI NGDAKDGDEE EKREEIKGGT ENSTTRP00000004873/1-1245 SDSGWPKNMA TYPSIQEEET FEIIDKFPEI NCDAKDSHEE EKREEIKGDT bmy_01294T0/1-1309 SDSGWPKNMA TYPSIQEEET FEIIDKFPEI NCDAKDRHEE DKREEIKGDA BACU014418/1-1165 SDSGWPKNMA TYPSIQEEET FEIIDKFPGI NCDAKDRHEE EKREEIKGDA 851 900 ENSBTAP00000053257/1-1244 GPPFKDSPCW VDPEGKIAER AEDVPVGFHS VVDESRDKSC MVACNSYTPH ENSTTRP00000004873/1-1245 GPTFKDSACW VDAEEETAER AEDRPVDFHI VVDEPLGKSS MTACSTFTPH bmy_01294T0/1-1309 GPTFKDSPCW VDPEEETAER AEDMPVDFHI VVDEPLGKSS MTACSTFTPX BACU014418/1-1165 GPTFKDSPCW VDPEEETAER AEDMPVDFHI VVDEPLGKSS MTACSTFTPH 901 950 ENSBTAP00000053257/1-1244 WLVENPNSGK NGLSVKEQGI DPDASTVDEE SPLLGSADVH TTSTRGSPRP ENSTTRP00000004873/1-1245 WLVQNPDSGK SGGSVKEQDI DPDASTVDEE SQLLGSTDVH ATSTHGSHRP bmy_01294T0/1-1309 WLVQNPDSGK SGGSVKEQGI DPDASTVDEE SQLLDSTDVH ATSTHGSHRP BACU014418/1-1165 WLVQNPDSGK SGGSVKEQGI DPDASTVDEE SQLLDSTDVH AASTHGSHRP 951 1000 ENSBTAP00000053257/1-1244 CTWKQLHVQG AQIPSSSVSR KTSTPVLSED CTTTEEANEP GNLLNCSQNS ENSTTRP00000004873/1-1245 CALRQLRGQG AQISNSSVSG NTSIPVLSED CTTTEEANEP GNVLNCSQSS bmy_01294T0/1-1309 CALRQLRGQG AQIPNSSVSG NTSIPVLSED CTTTEEANEP GNLLNCSQSS BACU014418/1-1165 CALRQLRGQG AQIPNSSVSG NTSIPVLSED CTTTEEANEP GNLLNCSQSS 1001 1050 ENSBTAP00000053257/1-1244 SLSSSWWLKS RAISSGSSEG ENPWSFLNSS GSSFVSLPGM TKQAILEART ENSTTRP00000004873/1-1245 SSSLAWWLES PAISSGSSEG ENPWSFLNSS GSSFVSLPGM TTQKILKART bmy_01294T0/1-1309 SSSLAWWLES PGISSGSSEG ENPWSFLNSS GSSFVSLPGI ATQKILKART BACU014418/1-1165 SSSSAWWLES PGISSGSSEG ENPWSFLNSS GSSFVSLPGV ATQKILKART 1051 1100 ENSBTAP00000053257/1-1244 LQPDDFEKLL AGVRHDWLFQ RLEHTGLFKS RQLHGAHSAL LLKYSKKSEL ENSTTRP00000004873/1-1245 LQPDDFEKLL AGVRHDWLFQ RLENTGVFKS RQLHGAHNAL LLKYSKKSEL bmy_01294T0/1-1309 LQPDDFEKLL AGVRHDWLFR RLENTGVFKS RQLHGAHNAL LLKYSKKSEL BACU014418/1-1165 LQPDDFEKLL AGVRHDWLFQ RLENTGVFKS RQLHGAHNAL LLKYSKKSEL 1101 1150 ENSBTAP00000053257/1-1244 WTAQETVVYL GDYLHVTKKG RQRNAFWVHH LHQEETLGSH RYVGKEYKEQ ENSTTRP00000004873/1-1245 WTAQETVVYL GDYLNVKKKG RQRNAFWVHH LHQEETLG-- RYVGKEYKEQ bmy_01294T0/1-1309 WTAQETVVYL GDYLNVKKKG RQRNAFWVHH LHQEETLG-- RYVGKEYKEQ BACU014418/1-1165 WTAQETVVYL GDYLNVKKKG RQRNAFWVHH LHQEETLG-- RYVGKEYKEQ 1151 1200 ENSBTAP00000053257/1-1244 KGLWHHFTDV ERQMTAQHYV TEFNKRLYEQ KIHTQIFYIP SSVLLILEGK ENSTTRP00000004873/1-1245 KGLWHHFIDV ERQMTAQHYV TEFNKRLYEQ NIHTQIFYIP SSVLLILEGK bmy_01294T0/1-1309 KGLWHHFIDV ERQMTAQHYV TEFNKRLYEQ KIHTQIFYIP SSILLILEGK BACU014418/1-1165 KGLWHHFIDV ERQMTAQHYV TEFNKRLYEQ KIQTQIFYIP SSVLLILEGK 1201 1250 ENSBTAP00000053257/1-1244 TIKGCVSVEP YMLGEFVKLS NNTKVVKTEY KATEYGLAYG HFSYEFSNHR ENSTTRP00000004873/1-1245 TIKGCVSVEP YILGEFVKLS NNTKVVKTEY KATEYGLAYG HFSYEFSNHR bmy_01294T0/1-1309 TIKGCVSVEP YILGEFVKLS NNTKVVKTEY KATEYGLAYG HFSYEFSNHR BACU014418/1-1165 TIKGCVSVEP YILGEFVKLS NNTKVVKTEY KATEYGLAYG HFAYEFSNHR 1251 1300 ENSBTAP00000053257/1-1244 DVVVDLQGWV TGNGKGLIYL TDPQIHSVDQ KDVTTNFGKK GIFYFFNNQH ENSTTRP00000004873/1-1245 DVVVDLQGWV TGNGKGLIYL TDPQIHSVDQ KDVTTNFGKR GIFYFFNNQH bmy_01294T0/1-1309 DVVVDLQGWV TGNGKGLIYL TDPQIHSVDQ KDVTTNFGKR GIFYFFNNQH BACU014418/1-1165 DVVVDLQGWV TGNGKGLIYL TDPQIHSVDQ KDVTTNFGKR GIFYFFNNQH 1301 1350 ENSBTAP00000053257/1-1244 VECNEICHRL SLTRPSIEKP NNS ENSTTRP00000004873/1-1245 VECNEICHRL SLTRPSIEKP RTP bmy_01294T0/1-1309 VECNEICHRL SLTRPSIEKP NNS BACU014418/1-1165 VECNEICHRL SLTRPSIEKP NNS