KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:03:21 2014 Check: 00 .. Name: ENSBTAP00000053271/1-798 Len: 803 Check: 1740 Weight: 1.00 Name: ENSTTRP00000005496/1-794 Len: 803 Check: 5901 Weight: 1.00 Name: bmy_01322T0/1-445 Len: 803 Check: 4711 Weight: 1.00 Name: BACU004989/1-799 Len: 803 Check: 9342 Weight: 1.00 // 1 50 ENSBTAP00000053271/1-798 MASAELYKLD DGKPHLSNCF PAKNLLRTPE EAGRGHWLVA RKGGLKKKPK ENSTTRP00000005496/1-794 MASSGVYKLD DGKPYLSNCF PAKNLLRMPE E-GRGHWLVA RKCSLKKKPR bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 MASSGVYKLD DGKPYLSNCF PAKNLLRMPE E-GRGHWLVA RKCSLKKKPR 51 100 ENSBTAP00000053271/1-798 NVAETTAEGQ EGQKVSFEVE GKKGSRQENQ VDTPGHMLDL AFLLKHHCVK ENSTTRP00000005496/1-794 GVVEARAEGQ ESQKVSFEVG GKKGSRQENQ VDTPGHVLDQ AFLLKHHCVK bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 GVVEARAEGQ ESQKVSFEVG GKKGSRQENQ VDTPGHVLDQ AFLLKHHCVK 101 150 ENSBTAP00000053271/1-798 DPSDLCSINV SGLKFSKAKE KDFKHFNSVI YINASENLLP LEAFHTFPVL ENSTTRP00000005496/1-794 NPSDLCTIN- -------AKE KDFKHFNSVI YINASENLLP LEAFHTFPVL bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 NPSDLCNINV SGLKFSKAKE KDFKHFNSVI YINASENLLP LEAFHTFPVL 151 200 ENSBTAP00000053271/1-798 KELELAFNGI KTVYVKYGDF KSLEFLDLSF NSLTAEAICD LGILPHLRVL ENSTTRP00000005496/1-794 KELELAFNGI KTVYVKDGDF KSLEFLDLSF NSLTAEAICD LGLLPHLRVL bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 KELELAFNGI KTVYVKYGDF KSLEFLDLSF NSLTAEAICD LGILPHLRVL 201 250 ENSBTAP00000053271/1-798 LLTGNGLTSL PPSLAVAEQE ASVTSLTTKR YILRFPALET LMLDDNKLSN ENSTTRP00000005496/1-794 LLTGNGLTSL PPNLAVAERX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 LLTGNGLTSL PPNLAVAEQE AYVTSLTSKR YILRFPALET LMLDDNKLSN 251 300 ENSBTAP00000053271/1-798 PNCFVSLAGL KRLKKLSLDQ NRIFRIPYLQ QVQLRDGSGD WVGGRGSPRK ENSTTRP00000005496/1-794 XXXXXXXXXX XXLKKLSLDQ NKIFRIPYLQ QVQLRDGSGD WVGGRGSSRK bmy_01322T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU004989/1-799 PNCFASLAGL SRLKKLSLDQ NKIFRIPYLQ QVQLRDGSGD WVGGRGSPRK 301 350 ENSBTAP00000053271/1-798 QPQSMLQSKS WIYEASDDQP DYTILPMKKD VDRTEVVFSS YPGFSTSETT ENSTTRP00000005496/1-794 EPQSMLQPKS WIFEASDDQL DYTVLPMKKD VDRTEVVFSS YPGFSTSETT bmy_01322T0/1-445 ----MLQPKS WIFEASDDQP DYTVLPMKKD VDRTEVVFSS YPGFSTSE-- BACU004989/1-799 EPQSMLQPKS WIFEASDDQP DYTVLPMKKD VDRTEVVFSS HPGFSTSETT 351 400 ENSBTAP00000053271/1-798 KVCALPPIFE ILPVKSLKAR NQTLAPPFPE LRYLSLAYNK IAKEDAILPV ENSTTRP00000005496/1-794 KVCALPPIFE ILPLKSLKAR NQTLALPFPE LRYLSLAYNK IAKEDAILPV bmy_01322T0/1-445 ---------- ---------- ---------- ---------- IAKEDAILPV BACU004989/1-799 KVCALPPIFE TLPVKSLKAR NQTLALPFPE LRYLSLAYNK IAKEDAILPV 401 450 ENSBTAP00000053271/1-798 ALFPSLCELI FHNNPLVAHT RGVPPLLKSF LQERLGIHLI RRKIVKAKHH ENSTTRP00000005496/1-794 ALFPSLCKLI FHNNPLVAHT GGVPPLLKSF LQEQLGIHLI RRKMVKAKRH bmy_01322T0/1-445 ALFPSLCELI FHNNPLVAHT QGM------- --ERLGIHLI RRKMVKAKHH BACU004989/1-799 ALFPSLCELI FHNNPLVAHT QGVPPLLKSF LQERLGIHLI RRKMVKAKHH 451 500 ENSBTAP00000053271/1-798 ILMPRKDSRK VKTQVPKVPK QPMILPHPS- ---VMIKSPS KEMLESEAEL ENSTTRP00000005496/1-794 ILMPRKDSRK VKTQVPKVPK QPLILHHPPM TTMTTIKSSS KEMLEAEAEL bmy_01322T0/1-445 ILMPRKDSRK VKTQVPKVPK QPLILHHPP- --MTTIKSSS KEMLETEAEL BACU004989/1-799 ILMPRKDSRK VKTQVPKVPK QPLILHHPP- --MTTIKSSS KEMLETEAEL 501 550 ENSBTAP00000053271/1-798 TMEPPPTKTI SVEREMPIEG LGGPPMPHRT FVPLPPICSD STVHSEETSP ENSTTRP00000005496/1-794 TKELPTTKTI SVERKMPIEG PEGLLLSHRA FVPLPPICSD STVHSEDTSR bmy_01322T0/1-445 TKELPATKTI SVEREMPIEG PDGFPLSHRA FVPLPPIFSD STVHSEDTSR BACU004989/1-799 TKELPATKTI SVEREMPIEG PDGLPLSHRA FVPLPPICSN STVHSEDTSR 551 600 ENSBTAP00000053271/1-798 RSDAAGRLSA DQLSDEDTKS TESIFLTQVS GLSSSIFQRD DSEIKEKEQR ENSTTRP00000005496/1-794 RSNAAGRLSP DHPSDEDTKS TESIFLTQVS GLSSSIFQRD DTEIKEKDQR bmy_01322T0/1-445 QSDAAGRLSP DHPSDEDTKS TESIFLTQVS GLSSSIFQRD DTEIKEKDQR BACU004989/1-799 QSDAAGRLSP DHPSDEDTKS TESIFLTQVS GLSSSIFQRD DTEIKEKDQR 601 650 ENSBTAP00000053271/1-798 PPSTAPREAK RTQKKPPSAS FPRKYHGYEE LLTAKPDPTF VEPKGIQKNA ENSTTRP00000005496/1-794 LPPTAPREVK RTQKKLPSAS FPRKYHGSEE LLTTKPDPAF TEPKGIQKNA bmy_01322T0/1-445 PPPTAPREVK RTQKKLPSAS FPRKYHGSEE LLTAKXDPAF TEPKGIQKNA BACU004989/1-799 PPPTAPREVK RTQKKLPSAS FPRKYHGSEE LLTAKPDPAF TEPKGIQKNA 651 700 ENSBTAP00000053271/1-798 QALQHMLKHP LVYRSSKPRL DTLQKHYVPK EKRTRRIPVP PRRKTRAQLL ENSTTRP00000005496/1-794 QALQHMLKHP LVYRSCKARL DTLQKHYVPK EKRTQRIPIP PPRKTQAQLL bmy_01322T0/1-445 QALQHMLKHP LVYRSCKPRL DTLQKHYVPK EKRTQRIPIP PPRKTRAQLL BACU004989/1-799 QALQHMLKHP LVYRSCKPRL DTLQKHYVPK EKRTQRIPIP PPRKTRAQLL 701 750 ENSBTAP00000053271/1-798 DDILIRMRDT QNITEAPLGA VLRQRTEQRL VNQKQFLEAK KLLKEFRARY ENSTTRP00000005496/1-794 DDILIRMRDP RNITEAPLGA VLCQRTEQQL VNQKQYLQAK RLLKEFRARY bmy_01322T0/1-445 DDILIRMRDP WNITEAPLGA VLCQRTEQRL VNQKQYLEAK RLLKEFRTRY BACU004989/1-799 DDVLIRMRDP WNMTEAPLGA VLCQRPEQRL VNQKQYLEAK RLLKEFRARY 751 800 ENSBTAP00000053271/1-798 RRLVRCSLRS VFGTTAPPQA RPALSGSQP- KLGRFLEFMD EFYQEPTASD ENSTTRP00000005496/1-794 RRLVRCSLRS VFGATAPPQV HLALSEGQPK KFGHFLEFMD QFCQEPTASD bmy_01322T0/1-445 RRLVRCSLRS VFGATAPPQV RPALSEGQPK KFGRFLEFMD EFCQEPTASD BACU004989/1-799 RRLVRCSLRL VFGATAPPQV RPALSEGQPK KFGRFLEFMD EFCQEPTASD 801 850 ENSBTAP00000053271/1-798 LKG ENSTTRP00000005496/1-794 SKG bmy_01322T0/1-445 SKG BACU004989/1-799 SKG