KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:23 2014 Check: 00 .. Name: bmy_05789T0/1-420 Len: 532 Check: 3469 Weight: 1.00 Name: ENSP00000267102/1-489 Len: 532 Check: 8329 Weight: 1.00 Name: ENSTTRP00000004511/1-487 Len: 532 Check: 2070 Weight: 1.00 Name: BACU018249/1-465 Len: 532 Check: 2715 Weight: 1.00 Name: ENSBTAP00000053276/1-489 Len: 532 Check: 6529 Weight: 1.00 // 1 50 bmy_05789T0/1-420 MEAADYEVLS VREQLFHERV RECIISTLLF ATLYILCHIA LTHFKKPAEF ENSP00000267102/1-489 MEAPDYEVLS VREQLFHERI RECIISTLLF ATLYILCHIF LTRFKKPAEF ENSTTRP00000004511/1-487 MEAADYEVLS VREQLFHEKV RECIISTLLF ATLYILCHIA LTRFKKPAEF BACU018249/1-465 ---------- ---------- ----ISTLLF ATLYILCHIA LTHFKKPAEF ENSBTAP00000053276/1-489 MEGADYEVLS VREQLFHERV RECIISTLLF ATLYIFCHIA LTHFKKPAEF 51 100 bmy_05789T0/1-420 TTADDEDATV NKIALELCTF TLAVALGAVL LLPFSIISNE VLLSLPRNYY ENSP00000267102/1-489 TTVDDEDATV NKIALELCTF TLAIALGAVL LLPFSIISNE VLLSLPRNYY ENSTTRP00000004511/1-487 TTADDEDATV NKIALELCTF TLAVALGAVL LLPFSIISNE VLLSLPRNYY BACU018249/1-465 TTADDEDATV NKIALELCTF TLAVALGAVL LLPFSIISNE VLLSLPRNYY ENSBTAP00000053276/1-489 TTVDEEDATV NKIALELCTF TLAVALGAVL LLPFSIISNE VLLSLPRNYY 101 150 bmy_05789T0/1-420 IQWLNGSLIH G--------- ---------- TSILVAAEGG DGEQIGPLEP ENSP00000267102/1-489 IQWLNGSLIH GLWNLVFLFS NLSLIFLMPF AYFFTESEGF AGS------- ENSTTRP00000004511/1-487 IQWLNGSLIH GLWNLVFLFS NLSLIFLMPF AYFFTESEGF AGS------- BACU018249/1-465 IQWLNGSLIH GLWNLVFLFS NLSLIFLMPF AYFFTESEGF AGS------- ENSBTAP00000053276/1-489 IQWLNGSLIH GLWNLVFLFS NLSLIFLMPF AYFFTESEGF AGS------- 151 200 bmy_05789T0/1-420 RFPLLQLGVL ARVYETVVML MLLTLLVLGM VWVASAIVDN NKASRESLYD ENSP00000267102/1-489 -----RKGVL GRVYETVVML MLLTLLVLGM VWVASAIVDK NKANRESLYD ENSTTRP00000004511/1-487 -----RKGVL ARVYETVVML MFLTLLVLGM VWVASAIVDN SKASTESLYX BACU018249/1-465 -----KKGVL ARVYETVVML MLLTLLVLGM VWVASAIVDN NKASRESLYD ENSBTAP00000053276/1-489 -----RKGVL ARVYETVVML MLLTLLVLGM VWVASAIVDN NKASRESLYD 201 250 bmy_05789T0/1-420 FWEYYLPYLY SCISFLGVLL LLVCTPLGLA RMFSVTGKLL VKPRLLEDLE ENSP00000267102/1-489 FWEYYLPYLY SCISFLGVLL LLVCTPLGLA RMFSVTGKLL VKPRLLEDLE ENSTTRP00000004511/1-487 FWEYYLPYLY -CISSRG-LL LLVCTPLGLA RMFSVTGKLL VKPRLLEDLE BACU018249/1-465 FWEYYLPYLY SCISFLGVLL LLVCTPLGLA RMFSVTGKLL VKPRLLEDLE ENSBTAP00000053276/1-489 FWEYYLPYLY SCISFLGVLL LLVCTPLGLA RMFSVTGKLL VKPRLLEDLE 251 300 bmy_05789T0/1-420 EQLHCSAFEE AALTRRICSE TQLFPVGMVS VAWAGPVQDL GTAPSSLPSD ENSP00000267102/1-489 EQLYCSAFEE AALTRRIC-- ---------- ---------- ---------N ENSTTRP00000004511/1-487 EQLHCSAFEE AALTRRIC-- ---------- ---------- ---------N BACU018249/1-465 EQLHCSAFEE AALTRRIC-- ---------- ---------- ---------N ENSBTAP00000053276/1-489 EQLHCSAFEE AALTRRIC-- ---------- ---------- ---------N 301 350 bmy_05789T0/1-420 PTSCWLPLDM ELLHRQVLAL QTQRVLLEKR RKASAWQRNL GYPLAMLCLL ENSP00000267102/1-489 PTSCWLPLDM ELLHRQVLAL QTQRVLLEKR RKASAWQRNL GYPLAMLCLL ENSTTRP00000004511/1-487 PTSCWLPLDM ELLHRRVLAL QTQRVLLEKR RKASAWQRNL GYPLAMLCLL BACU018249/1-465 PTSCWLPLDM ELLHRQVLAL QTQRVLLEKR RKASAWQRNL GYPLAMLCLL ENSBTAP00000053276/1-489 PTSCWLPLDM ELLHRQVLAL QTQRVLLEKR RKASAWQRNL GYPLAMLCLL 351 400 bmy_05789T0/1-420 VLT------- ---------- ---------- ---------- ---------- ENSP00000267102/1-489 VLTGLSVLIV AIHILELLID EAAMPRGMQG TSLGQVSFSK LGSFGAVIQV ENSTTRP00000004511/1-487 VLTGLSVLIV AIHILELLID EAAMPRGMQG ASLGQVSFSK LGSFGAVVQV BACU018249/1-465 VLTGLSVLTV AIHILELLID EAAMPRGMQG ASLGQVSFSK LGSFGAVVQV ENSBTAP00000053276/1-489 VLTGLSVLIV AIHILELLID EAAMPRGMQG ASLGQVSFSK LGSFGAVIQV 401 450 bmy_05789T0/1-420 -----VRIPA LVG------- ---------- -----VG--- ---------- ENSP00000267102/1-489 VLIFYLMVSS VVGFYSSPLF RSLRPRWHDT AMTQIIGNCV CLLVLSSALP ENSTTRP00000004511/1-487 VLIFYLMVSS VVGFYSSPLF WGLRPRWHDT AMTQIIGNCV CLLVLSSALP BACU018249/1-465 VLIFYLMVSS VVGFYSSPLF WGLRPRWHDT AMTQIIGNCV CLLVLSSALP ENSBTAP00000053276/1-489 VLIFYLMVSS VVGFYSSPLF RGLRPRWHDT AMTQIIGNCV CLLVLSSALP 451 500 bmy_05789T0/1-420 ------GLTR LDLLGDFGRF NWLGNFYIVF LYNAAFAGLT TLCLVKTFTA ENSP00000267102/1-489 VFSRTLGLTR FDLLGDFGRF NWLGNFYIVF LYNAAFAGLT TLCLVKTFTA ENSTTRP00000004511/1-487 VFSRTLGLTR LDLLGDFGRF NWLGNFYIVF LYNAAFAGLT TLCLVKTFTA BACU018249/1-465 VFSRTLGLTR LDLLGDFGRF NWLGNFYIVF LYNAAFASLT TLCLVKTFTA ENSBTAP00000053276/1-489 VFSRTLGLTR FDLLGDFGRF NWLGNFYIVF LYNAAFAGLT TLCLVKTFTA 501 550 bmy_05789T0/1-420 AVRAELIRAF GLDRLPLPVS GFPRASRKTQ HQ ENSP00000267102/1-489 AVRAELIRAF GLDRLPLPVS GFPQASRKTQ HQ ENSTTRP00000004511/1-487 AVRAELIRAF GLDRLPLPVS GFPRASRKTQ HQ BACU018249/1-465 AVRAELIRAF GLDRLPLPVS GFPRASRKTQ HQ ENSBTAP00000053276/1-489 AVRAELIRAF GLDRLPLPVS GFPRVSKKTQ HQ