KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:23 2014 Check: 00 .. Name: ENSTTRP00000013498/1-260 Len: 261 Check: 2109 Weight: 1.00 Name: ENSP00000356853/1-261 Len: 261 Check: 8979 Weight: 1.00 Name: ENSBTAP00000053278/1-261 Len: 261 Check: 8807 Weight: 1.00 Name: bmy_18859T0/1-232 Len: 261 Check: 3165 Weight: 1.00 Name: BACU004232/1-229 Len: 261 Check: 8174 Weight: 1.00 // 1 50 ENSTTRP00000013498/1-260 MAGDSEQTLQ NHQQPNGGEP FLIGVSGGTA SGKSSVCAKI VQLLGQNEVD ENSP00000356853/1-261 MAGDSEQTLQ NHQQPNGGEP FLIGVSGGTA SGKSSVCAKI VQLLGQNEVD ENSBTAP00000053278/1-261 MAGDSEQTLQ NHQQPNGGEP FLIGVSGGTA SGKSSVCAKI VQLLGQNEVD bmy_18859T0/1-232 MERMFNSILT HQAN------ -LIDLN---- --FSSVCAKI VQLLGQNEVD BACU004232/1-229 ---------- ---------- ---------- --QSSVCAKI VQLLGQNEVD 51 100 ENSTTRP00000013498/1-260 YRQKQVVILS QDSFYRVLTS EQKAKALKGQ FNFDHPDAFD NELIFKTLKE ENSP00000356853/1-261 YRQKQVVILS QDSFYRVLTS EQKAKALKGQ FNFDHPDAFD NELILKTLKE ENSBTAP00000053278/1-261 YRQKQVVILS QDSFYRALTS EQKAKALKGQ FNFDHPDAFD NELIFKTLKE bmy_18859T0/1-232 YRQKQVVILS QDSFYRVLTS EQKSKALKGQ ---------- ------TLKE BACU004232/1-229 YRQKQVVILS QDSFYRVLTS EQKAKALKGQ FNFDHPDAFD NELIFKTLKE 101 150 ENSTTRP00000013498/1-260 ITEGKTVQIP VYDFVSHSRX XXXXXXXXXX XXXXXXXXXX XXXXVRDLFQ ENSP00000356853/1-261 ITEGKTVQIP VYDFVSHSRK EETVTVYPAD VVLFEGILAF YSQEVRDLFQ ENSBTAP00000053278/1-261 ITEGKTVQIP VYDFVSHSRK EETVTVYPAD VVLFEGILAF YSQEVRDLFQ bmy_18859T0/1-232 ITEGKTVQIP VYDFVSHSRK EETVTVYPAD VVLFEGILAF YSQEVRDLFQ BACU004232/1-229 ITEGKTVQIP VYDFVSHSRK EETVTVYPAD VVLFEGILAF YSQEVRDLFQ 151 200 ENSTTRP00000013498/1-260 M-LFVDTDAD TRLSRRVLRD ISERGRDLEQ ILSQYITFVK PAFEEFCLPT ENSP00000356853/1-261 MKLFVDTDAD TRLSRRVLRD ISERGRDLEQ ILSQYITFVK PAFEEFCLPT ENSBTAP00000053278/1-261 MKLFVDTDAD TRLSRRVLRD ISERGRDLEQ ILSQYITFVK PAFEEFCLPT bmy_18859T0/1-232 MKLFVDTDAD TRLSRRVLRD ISERGRDLEQ ILSQYITFVK PAFEEFCLPT BACU004232/1-229 MKLFVDTDAD TRLSRRVLRD ISERGRDLEQ ILSQYITFVK PAFEEFCLPT 201 250 ENSTTRP00000013498/1-260 KKYADVIIPR GADNLVAINL IVQHIQDILN GGLSKRQTNG YLNGYTPSRK ENSP00000356853/1-261 KKYADVIIPR GADNLVAINL IVQHIQDILN GGPSKRQTNG CLNGYTPSRK ENSBTAP00000053278/1-261 KKYADVIIPR GADNLVAINL IVQHIQDILN GGLSKRQTNG YLNGYTPSRK bmy_18859T0/1-232 KKYADVIIPR GADNLVAINL IVQHIQDILN GGISKRQTNG YLNGYTPSRK BACU004232/1-229 KKYADVIIPR GADNLVAINL IVQHIQDILN GGISKRQTNG YLNGYTPSRK 251 300 ENSTTRP00000013498/1-260 RQASESSSRP H ENSP00000356853/1-261 RQASESSSRP H ENSBTAP00000053278/1-261 RQASESSSRP H bmy_18859T0/1-232 RQASESSSRP H BACU004232/1-229 RQASESSSRP H