KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:24 2014 Check: 00 .. Name: bmy_15444T0/1-966 Len: 1434 Check: 3892 Weight: 1.00 Name: ENSTTRP00000014403/1-1338 Len: 1434 Check: 6144 Weight: 1.00 Name: BACU001891/1-893 Len: 1434 Check: 7946 Weight: 1.00 Name: ENSP00000311030/1-1359 Len: 1434 Check: 1560 Weight: 1.00 Name: ENSBTAP00000053282/1-1365 Len: 1434 Check: 2870 Weight: 1.00 // 1 50 bmy_15444T0/1-966 MVGDGPCLIS DLDWRGQRRS FSERYDPSLK TMISVRLYAR LAPNPVDDAG ENSTTRP00000014403/1-1338 MVGDGPCLIS DLDWRGQQRS FSERYDPSLK TMIPVRLYAR LAPNPGDDAG BACU001891/1-893 MVGDGPCLIS DLYRRGKRRS FSERYDPTLK TMIPVRLYAR LAPNPVDDAG ENSP00000311030/1-1359 MVGEGPYLIS DLDQRGRRRS FAERYDPSLK TMIPVRPCAR LAPNPVDDAG ENSBTAP00000053282/1-1365 MVGDGPYLIS DLDRRGQRRS FTERYDPSLK TMIPVRPYAR LAPNPVDDAG 51 100 bmy_15444T0/1-966 LLSFATFSWL TPVMVRGYKH TLTVDTLPPL SPYDSFDTNA KRFQILWDEE ENSTTRP00000014403/1-1338 LLSFATFSWL TPVMMRGYKH TLTVDTLPPL SPYDSFDTNA KRFRILWDEE BACU001891/1-893 LLSFATFSWL TPVMVRSYKH TLTVDTLPPL SPYDSFDTNA KRFQILWDEE ENSP00000311030/1-1359 LLSFATFSWL TPVMVKGYRQ RLTVDTLPPL STYDSSDTNA KRFRVLWDEE ENSBTAP00000053282/1-1365 LLSFATFSWL TPVMVRGYQH TLTVDTLPPL SLYDSSDTNA KRFRILWDEE 101 150 bmy_15444T0/1-966 TPQ------- ---------- ---------- ---------- ---------- ENSTTRP00000014403/1-1338 VERMGPKKAS LGREVWKFQR TRVLMDIMAN ILCIITAAIG PVVLIPQILQ BACU001891/1-893 M--------- ---------- ---------- ---------- --VLIHQILQ ENSP00000311030/1-1359 VARVGPEKAS LSHVVWKFQR TRVLMDIVAN ILCIIMAAIG PVILIHQILQ ENSBTAP00000053282/1-1365 VERMGPEKAS LGRVVWKFQR TRVLMDIVVN ILCIIMAAIG PTVIIHQILQ 151 200 bmy_15444T0/1-966 ---------- -------PFR KPSVEEMFRW ---------- ---------- ENSTTRP00000014403/1-1338 QTQSTSRKVW VGVSLCTALF TTEFTKVLFW ALAWAINYRM AIRLKVATST BACU001891/1-893 QTESISRKVW VGVSLCTAFF TTEFTEVVFW TLAWAINYCT AIRLKVVIST ENSP00000311030/1-1359 QTERTSGKVW VGIGLCIALF ATEFTKVFFW ALAWAINYRT AIRLKVALST ENSBTAP00000053282/1-1365 QTESVSRKVW IGVGLCAALF TTEFTKVLFW ALAWAINYRT AIRLKVAVST 201 250 bmy_15444T0/1-966 -------PFQ RLNPCAF--- ---------- ---------F PATILILMAI ENSTTRP00000014403/1-1338 LVFENLVSFK TLTHISV--V LNILSSDSYS LFEAALFCPL LATILILMAV BACU001891/1-893 LVFENLVSFK TLTHISVGEV LNILSSDSYS LFEAALFCPL PATILILMAV ENSP00000311030/1-1359 LVFENLVSFK TLTHISVGEV LNILSSDSYS LFEAALFCPL PATIPILMVF ENSBTAP00000053282/1-1365 LVFENLVSFK MLTHISVGEV LNILSSDSYS LFEAALFCPL PATIPILMAV 251 300 bmy_15444T0/1-966 CAVYAFFILG STALIGISVY VLFIPIQ--- ---------- ---------- ENSTTRP00000014403/1-1338 CVVYAFFIVG PTALIGISVC VLFIPIQMFM AKLNSAF-LS AILVTDQRVQ BACU001891/1-893 CAVYAFFILG STALIGISVY VLFIPIQ--- ---------- ---------- ENSP00000311030/1-1359 CAAYAFFILG PTALIGISVY VIFIPVQMFM AKLNSAFRRS AILVTDKRVQ ENSBTAP00000053282/1-1365 CAVYAFFILG PTALIGISVY LLFIPIQMFL AKLNSAFRRS AISVTDKRVQ 301 350 bmy_15444T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014403/1-1338 TMNEFLTCIK LI-MYTWEKS FTNAIPDIRK RERRLLEKAG FVQSGNSVLA BACU001891/1-893 ---------- ---------- ---------- ---------- ---------- ENSP00000311030/1-1359 TMNEFLTCIR LIKMYAWEKS FTNTIQDIRR RERKLLEKAG FVQSGNSALA ENSBTAP00000053282/1-1365 TMNEFLTCIK LIKMYAWEKS FTNTIRGIRK KERKLLEKAG FVQSGNSALA 351 400 bmy_15444T0/1-966 ---------- ---------- ------AFTV IAMFNVMKFS IAILPFSVKA ENSTTRP00000014403/1-1338 PIASTIAIVL TFTCHILL-R KLAAPVAFSV ITMFNVMEFS IAILPFSVKA BACU001891/1-893 ---------- ---------- ------AFTV IAMFNVMKFS IAILPFSVKA ENSP00000311030/1-1359 PIVSTIAIVL TLSCHILLRR KLTAPVAFSV IAMFNVMKFS IAILPFSIKA ENSBTAP00000053282/1-1365 PIASTIAIVL TFTCHILLRR KLTAPVAFSV IAMFNVMKFS IAILPFSVKA 401 450 bmy_15444T0/1-966 AAEANVSLRR MKKILIAKSP PSYITQPEDP DTVLLLANAT LTWEQETRRK ENSTTRP00000014403/1-1338 AAEVNVSLRR MKKILIAKSP PSYITQPEEP DMVLLLANAT LTWEQETRGK BACU001891/1-893 AAEANVSLRR M--------- ---------- ---------- ---------- ENSP00000311030/1-1359 MAEANVSLRR MKKILIDKSP PSYITQPEDP DTVLLLANAT LTWEHEASRK ENSBTAP00000053282/1-1365 AAEANVSLRR MKKILIAKSP PSYITQPEDP DTVLLLANAT LTWEQETSRK 451 500 bmy_15444T0/1-966 SDLKKVQNQK KHFLKKQRPE AYS-LSLSGQ GVTGAEKQRG GHKSVLHSIS ENSTTRP00000014403/1-1338 SDLKKVQNQK KHLLKKQRPE AYS-LSPSGQ GVTSAQEQHG SPKSVLHNIS BACU001891/1-893 ---------- ---------- ---------- ---------- ---------- ENSP00000311030/1-1359 STPKKLQNQK RHLCKKQRSE AYSERSPPAK GATGPEEQSD SLKSVLHSIS ENSBTAP00000053282/1-1365 SGLKKMQNQK KHFLKKQRPE AYN-LSPSAQ GAPDEEERHD SPKSVLHNIS 501 550 bmy_15444T0/1-966 FVVRK----- ---------- ---------- ---------- ------VVRW ENSTTRP00000014403/1-1338 FVVRKGKVLG ICGNVGSGKS SLLAALLGQM QLQQG----- GTLAYVSQQA BACU001891/1-893 ----KGKVLG ICGNVGSGKS SLLAALLGQM QLQQGIVAVN GTLAYVSQQA ENSP00000311030/1-1359 FVVRKGKILG ICGNVGSGKS SLLAALLGQM QLQKGVVAVN GTLAYVSQQA ENSBTAP00000053282/1-1365 FVVRKGKILG ICGNVGSGKS SLIAALLGQM QLQQGIVAVN GTLAYVSQQA 551 600 bmy_15444T0/1-966 WLMTCHQGHG QIFCE----I RYQHAVRVCA LQEDLSSPPY GDLTE----- ENSTTRP00000014403/1-1338 WIFQGNGREN ILFGEKYDHQ RYQHTVRVCA LQVDLSTPPY GDLTEIGEQG BACU001891/1-893 WIFQGNVREN VLFGEKYHHQ RYQHAVRVCA LQEDLSSPPY GDLTE----- ENSP00000311030/1-1359 WIFHGNVREN ILFGEKYDHQ RYQHTVRVCG LQKDLSNLPY GDLTEIGERG ENSBTAP00000053282/1-1365 WIFHGNVREN ILFGEKYDHQ RYQHAVRVCA LQEDLSSLPY GDLTEIGERG 601 650 bmy_15444T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014403/1-1338 LNLSGGQRQR ISLA-AVYLN HEIYLLDDLL SAVDAHVGKH IFEECIEKVL BACU001891/1-893 ---------- ---------- ---------- ---------- ---------- ENSP00000311030/1-1359 LNLSGGQRQR ISLARAVYSD RQLYLLDDPL SAVDAHVGKH VFEECIKKTL ENSBTAP00000053282/1-1365 LNLSGGQRQR ISLARAIYSN HEIYLLDDPL SAVDAHVGKH VFEECIKKAL 651 700 bmy_15444T0/1-966 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014403/1-1338 R-KTVVLVTH QLQFLECRDE VILLEDGEIC EKG----LME ERGLYAKLIH BACU001891/1-893 ---------- ---FLECCDE VILLEDGEIC EKG------- ---------- ENSP00000311030/1-1359 RGKTVVLVTH QLQFLESCDE VILLEDGEIC EKGTHKELME ERGRYAKLIH ENSBTAP00000053282/1-1365 RGKTVVLVTH QLQFLESCDE VILLEDGEIC EKGTHKELME ERGRYAKLIH 701 750 bmy_15444T0/1-966 --------EP EHIYDAAVVE ALKESPAERD EDT---VLAP GDEKHDGKEP ENSTTRP00000014403/1-1338 NL-GLKFKDP EHI-DAAVVE ALKESPAERD EETGTIILAP -DEKHDGKEP BACU001891/1-893 --------EP EHIYDAAVVE ALKESPAERD EDT------- ---------- ENSP00000311030/1-1359 NLRGLQFKDP EHLYNAAMVE AFKESPAERE EDAGIIVLAP GNEKDEGKES ENSBTAP00000053282/1-1365 NLRGLQFKDP EHMYDAAAVE ALKESPFERN EDA---VLAP GDEKREGKES 751 800 bmy_15444T0/1-966 ETESEFVDIK ---------- ---------- ---------- GYFLSLFVVS ENSTTRP00000014403/1-1338 ETESEFVDIK VPLHQLIQTE SPRGGTVTWK TYDTYIKASG GYFLSPW--S BACU001891/1-893 ---------- ---------- ---------- ---------- GYFLSLFVVS ENSP00000311030/1-1359 ETGSEFVDTK VPEHQLIQTE SPQEGTVTWK TYHTYIKASG GYLLSLFTVF ENSBTAP00000053282/1-1365 ETESEFVDIK VPPHQLIQTE SPREGTVTWK TYHTYIKASG GYLLSLFVVS 801 850 bmy_15444T0/1-966 LFLLMIGSSA FSNLWLGVWL NKGSQMTCGP HGNMSTCGVG PVLADAGPRV ENSTTRP00000014403/1-1338 LFLVMIGSSI FSDVWLGVWL NKGSPMTCGP HGIISTCEVG LVQADTGPRV BACU001891/1-893 LFLLMISSSA FSNLWLGVWL NKGSQMTCGP HGDMSTCGVG AVLADAGPRV ENSP00000311030/1-1359 LFLLMIGSAA FSNWWLGLWL DKGSRMTCGP QGNRTMCEVG AVLADIGQHV ENSBTAP00000053282/1-1365 FFLLMIGSSA FSSWWLGVWL DKGSQMKCGP HSNMSTCEVG MVLADSGLRV 851 900 bmy_15444T0/1-966 YQWAYAGSMV SVLVFGTTQG FTFTRTMLMA SFSLHDRVFD KILESPMSFF ENSTTRP00000014403/1-1338 YQWAYAGSMV SVLVFGISQG FTFTKTTLMA SFSLHDRVFD KILESPMSLF BACU001891/1-893 YQWACSGRMV SVLVFGITRG FTFTRTTLTA SFSLHDRVFD KILESPMSFF ENSP00000311030/1-1359 YQWVYTASMV FMLVFGVTKG FVFTKTTLMA SSSLHDTVFD KILKSPMSFF ENSBTAP00000053282/1-1365 YQWVYPGSMV SILVFGITKG FMFTKTTLMA SSSLHDRVFD KILESPMSFF 901 950 bmy_15444T0/1-966 DRTPAGRLMN RCSEDMDELD VRLPFHAENF LQQFFMVLFI LVILAAVFPA ENSTTRP00000014403/1-1338 DRTPSGWLMN RFSEDTNELD VRLLFHAENF LQRFFMVPFI LVILAAVFPA BACU001891/1-893 ERTPAGRLMN RCSEDMDELH VRLTFHAENF LQQFFMVLFI RVILAAVFPA ENSP00000311030/1-1359 DTTPTGRLMN RFSKDMDELD VRLPFHAENF LQQFFMVVFI LVILAAVFPA ENSBTAP00000053282/1-1365 DRTPTGRLMN RFSKDMDELD VRLPFHAENF LQQFFMVLFI LVILAAVFPA 951 1000 bmy_15444T0/1-966 VLLVLAGLAV GVFILL---- RGVQELKKVE GVSESPWVSH VASCMQGLGT ENSTTRP00000014403/1-1338 VLLVLAGLAV GFFILLRIFH RGVQELKKVE SVSWSPWFSH VASFMQGLGT BACU001891/1-893 VLLVLAGLAV GVVILLRIFH RGIQELKKVE GVSESPWVSH VASCMQGLGT ENSP00000311030/1-1359 VLLVVASLAV GFFILLRIFH RGVQELKKVE NVSRSPWFTH ITSSMQGLGI ENSBTAP00000053282/1-1365 VLLVLAILAV GFFILLRVFH RGIQELKKVE NISRSPWFSH ITSSMQGLGT 1001 1050 bmy_15444T0/1-966 IHAYAKRDDC VSNCSDEAPF PLPVQMRCGR GEPPTGPRSP AALLGTADGQ ENSTTRP00000014403/1-1338 IHAYNKREDC VS-------- ---------- ---------- ---------- BACU001891/1-893 IHA--KRDDR VSKFK----- ---------- ---------- ---------- ENSP00000311030/1-1359 IHAYGKKESC IT-------- ---------- ---------- ---------- ENSBTAP00000053282/1-1365 IHAYNRREDC VSKFK----- ---------- ---------- ---------- 1051 1100 bmy_15444T0/1-966 ALVGPPMLND ENCSHHLYFN CALRWFALRM DVLMNIVTFI VALSVTLSFF ENSTTRP00000014403/1-1338 ---------- ---NHLLYFN CALRWFALRM DILMNIITFI VTLLVTLSFS BACU001891/1-893 ------MLND ENCSHLLYFN CALRWFALRM DVLMNIVTFI VALLVTLSFS ENSP00000311030/1-1359 ---------- ---YHLLYFN CALRWFALRM DVLMNILTFT VALLVTLSFS ENSBTAP00000053282/1-1365 ------MLND ENCSHLLYFN CALRWFALRM DVLMNIVTFI VALLVTLSFS 1101 1150 bmy_15444T0/1-966 SISASSKGLS LSYIIQLSGL LQVCVRTGTE TQAKFTSVEL LREYISTCVP ENSTTRP00000014403/1-1338 SISASSEGLS LSYIIQLSGL LQVCLRTGTE TQAKFTSVEL LREYISTCVX BACU001891/1-893 SISASSKGSP LSYIIQLSGL LQVCVRTGTE TQAKFTSVEL LREYISLIV- ENSP00000311030/1-1359 SISTSSKGLS LSYIIQLSGL LQVCVRTGTE TQAKFTSVEL LREYISTCVP ENSBTAP00000053282/1-1365 SISASSKGLS LSYIIQLSGL LQVCVRTGTE TQAKFTSVEL LREYISTCVP 1151 1200 bmy_15444T0/1-966 ECTHPLKVGT CPHDWPSSGE ITFRDYQMRY RDNTPLVLNG LNLNTQSGQT ENSTTRP00000014403/1-1338 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001891/1-893 -------VAY RPAMWA---- ---------- ---------- ---------- ENSP00000311030/1-1359 ECTHPLKVGT CPKDWPSRGE ITFRDYQMRY RDNTPLVLDS LNLNIQSGQT ENSBTAP00000053282/1-1365 ERTHRLKVGT CPHDWPSHGE ITFRDYQMRY RDDSPLVLNG LNLNIQSGQT 1201 1250 bmy_15444T0/1-966 VGIVGRTGFD RYSDMMEYKL MFDLLLLHLS FLGKSSLGMA LFRLVEAASG ENSTTRP00000014403/1-1338 XXXXXXXXX- ---------- ---------- --XKSSLGMA LFRLLEPASG BACU001891/1-893 ---------- ---------- ---------- --GKSSLGMA LFHLVEAASG ENSP00000311030/1-1359 VGIVGRTGS- ---------- ---------- --GKSSLGMA LFRLVEPASG ENSBTAP00000053282/1-1365 VGIVGRTGS- ---------- ---------- --GKSSLGMA LFRLVEPAGG 1251 1300 bmy_15444T0/1-966 TALTDGMHIC TVGWEDLRTK LTVIPQGPVL FVGTVRYNLD PFGSHSNEMF ENSTTRP00000014403/1-1338 TILIDGMDIC TAGLEDLRTK LTVIPQDPVL FVGTVRYNLD PFASHSDEML BACU001891/1-893 TTLTDGMDIC TVGCEDLRTK LTVIPQDPVL FVGTVRYNLD PFGSHSDEML ENSP00000311030/1-1359 TIFIDEVDIC ILSLEDLRTK LTVIPQDPVL FVGTVRYNLD PFESHTDEML ENSBTAP00000053282/1-1365 TILIDGVDIC TVDLEDLRTK LTVIPQDPVL FVGTVRYNLD PFESHSDEML 1301 1350 bmy_15444T0/1-966 WQVLERTFMR DTIMKLLEKL QAEVTENGEN FSVGERQLLC MARALLCNSK ENSTTRP00000014403/1-1338 WQVLERTFMR DTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001891/1-893 WQVLERTFMR DT-------- ---------- ---------- ---------- ENSP00000311030/1-1359 WQVLERTFMR DTIMKLPEKL QAEVTENGEN FSVGERQLLC VARALLRNSK ENSBTAP00000053282/1-1365 WQVLERTFMR DTIMKLPEKL QAEVTENGEN FSVGERQLLC MARALLRDSK 1351 1400 bmy_15444T0/1-966 V--------- -RKQRGKWI- ---------- ---------- ---------- ENSTTRP00000014403/1-1338 IILLDEATAS MDSKTGTLVQ STIKDAFKDC TVLTIAHHLN TVLNCDHILV BACU001891/1-893 IILLDEATAS MDSKTDTLVQ STIKDAFKDC TVLTIAHRLN TVLNCDCVLV ENSP00000311030/1-1359 IILLDEATAS MDSKTDTLVQ NTIKDAFKGC TVLTIAHRLN TVLNCDHVLV ENSBTAP00000053282/1-1365 IILLDEATAS MDSKTDTLVQ NTIKDAFKDC TVLTIAHRLN TVLNCDRVLV 1401 1450 bmy_15444T0/1-966 ---GQMLDIS CSATQSKR-- ---------- ---- ENSTTRP00000014403/1-1338 LENGKVVEFD KPEVLAEKPD SAFAMLLAAE NKVL BACU001891/1-893 MENGKVVEFD KPEVLAEKLD SAFAMLLAAE K--- ENSP00000311030/1-1359 MENGKVIEFD KPEVLAEKPD SAFAMLLAAE VRL- ENSBTAP00000053282/1-1365 MENGKVVEFD KPEVLAEKPG SAFSMLLAAE NKV-