KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:26 2014 Check: 00 .. Name: BACU009291/1-714 Len: 854 Check: 9338 Weight: 1.00 Name: ENSTTRP00000015794/1-445 Len: 854 Check: 6466 Weight: 1.00 Name: ENSP00000283871/1-445 Len: 854 Check: 7954 Weight: 1.00 Name: bmy_10106T0/1-563 Len: 854 Check: 8382 Weight: 1.00 Name: ENSBTAP00000053295/1-443 Len: 854 Check: 9892 Weight: 1.00 // 1 50 BACU009291/1-714 MASLDRVKVL VLGDSGVGKS SLVHLLCQNQ VLGNPSWTVG CSVDVRVHDY ENSTTRP00000015794/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 ---------- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053295/1-443 ---------- ---------- ---------- ---------- ---------- 51 100 BACU009291/1-714 KEGTPEEKTY YIEFWDVGGS VGSASSVKST RAVFYNSVNG IILVHDLTNK ENSTTRP00000015794/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 ---------- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053295/1-443 ---------- ---------- ---------- ---------- ---------- 101 150 BACU009291/1-714 KSSQNLYRWS LEALNRDLVP TGVLVTNGDY DREQFADNQI PLLVIGTKLD ENSTTRP00000015794/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 ---------- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053295/1-443 ---------- ---------- ---------- ---------- ---------- 151 200 BACU009291/1-714 QIHETKRHEV LTRTAFLAED FNAEEINLDC TNPRYLAAGS SNAVKLSRFF ENSTTRP00000015794/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 ---------- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053295/1-443 ---------- ---------- ---------- ---------- ---------- 201 250 BACU009291/1-714 DKNWNENVAF STYCHNSWKR LRIPELQSQK ELREALVQAV AFRGFAVVS- ENSTTRP00000015794/1-445 ---------- ---------- --------MT ELK------- ---------- ENSP00000283871/1-445 ---------- ---------- --------MA ELK------- ---------- bmy_10106T0/1-563 ---------- ----HNSRKR LRIPELQSQK ELREALVQAV VFRGFAVVSA ENSBTAP00000053295/1-443 ---------- ---------- --------MT ELK------- ---------- 251 300 BACU009291/1-714 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015794/1-445 ---------- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 ---------- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 QEKEVRTLSA QTFLPPFAER NNAAVEQSEA TVILSGFRQD WSAIPFHRTE ENSBTAP00000053295/1-443 ---------- ---------- ---------- ---------- ---------- 301 350 BACU009291/1-714 ---------- --------YI SGFGNECASE DPRCPGALPE GQNNPQVCPY ENSTTRP00000015794/1-445 ---------- --------YI SGFGNECASE DPRCPGALPE GQNNPQVCPY ENSP00000283871/1-445 ---------- --------YI SGFGNECSSE DPRCPGSLPE GQNNPQVCPY bmy_10106T0/1-563 DNFGSLPFLS SSDSIFLMYI SGFGNECASE DPRCPGALPE GQNNPQVCPY ENSBTAP00000053295/1-443 ---------- --------YI SGFGNECASE DPRCPGALPE GQNNPQVCPY 351 400 BACU009291/1-714 NLYAEQLSGS AFTCPRSSNK RSWLYRILPS VSHKPFESID QGHVTHNWDE ENSTTRP00000015794/1-445 NLYAEQLSGS AFTCPRSSNK RSWLYRILPS VSHKPFESID QGHVTHNWDE ENSP00000283871/1-445 NLYAEQLSGS AFTCPRSTNK RSWLYRILPS VSHKPFESID EGQVTHNWDE bmy_10106T0/1-563 NLYAEQLSGS AFTCPRSSNK RSWLYRILPS VSHKPFESID QGHVTHNWDE ENSBTAP00000053295/1-443 NLYAEQLSGS AFTCPRSTNK RSWLYRILPS VSHKPFEFID QGHITHNWDE 401 450 BACU009291/1-714 VDPDPNQ--- ---------- ---------- ---------- ---------- ENSTTRP00000015794/1-445 VDPDPNQ--- ---------- ---------- ---------- ---------- ENSP00000283871/1-445 VDPDPNQ--- ---------- ---------- ---------- ---------- bmy_10106T0/1-563 VDPDPNQVTW SCELENSMSP SAKLAENNFV SVFPENLWFA NLRLVLFKHP ENSBTAP00000053295/1-443 VDPDPNQ--- ---------- ---------- ---------- ---------- 451 500 BACU009291/1-714 ---LRWKPFE IPKASQKKVD FVS------- ---------- --GLHTLCGA ENSTTRP00000015794/1-445 ---LRWKPFE IPKTSQKKVD FVN------- ---------- --GLHTLCGA ENSP00000283871/1-445 ---LRWKPFE IPKASQKKVD FVS------- ---------- --GLHTLCGA bmy_10106T0/1-563 CYLLRWKPFE IPKASQKKVD FVSGPAGGLA SFTFPSRAGL SQGLHTLCGA ENSBTAP00000053295/1-443 ---LRWKPFE IPKASQKKVD FVN------- ---------- --GLHTLCGA 501 550 BACU009291/1-714 GDIRSNNGLA VHIFLCNTSM GNRCFYSSDG DFLIVPQKGK LLIYTEFGKM ENSTTRP00000015794/1-445 GDIRSNNGLA VHIFLCNTSM GNRCFYSSDG DFLIVPQKGK LLIYTEFGKM ENSP00000283871/1-445 GDIKSNNGLA IHIFLCNTSM ENRCFYNSDG DFLIVPQKGN LLIYTEFGKM bmy_10106T0/1-563 GDIRSNNGLA AHIFLCNTSM RN----SSDG DFLI------ ---------- ENSBTAP00000053295/1-443 GDIRSNNGLA IHIFLCNTSM GNRCFYNSDG DLLIVPQKGK LLIYTEFGKM 551 600 BACU009291/1-714 LVQPNEICVI QVERNAVQXX XFSIDVFEET RGYILEVYGV HFELPDLGPI ENSTTRP00000015794/1-445 LVQPNEICVI Q------RGM RFSIDVFEET RGYILEVYGV HFELPDLGPI ENSP00000283871/1-445 LVQPNEICVI Q------RGM RFSIDVFEET RGYILEVYGV HFELPDLGPI bmy_10106T0/1-563 ---------- --------GM RFSIDVFEET RGYILEVYGV HFELPDLGPI ENSBTAP00000053295/1-443 LVQPNEICVI Q------RGM RFSIDVFEET RGYILEVYGV HFELPDLGPI 601 650 BACU009291/1-714 GANGLANPRD FLIPVAWYED HQVPGGYTVI NKYQGKLFAA KQDVSPFNVV ENSTTRP00000015794/1-445 XXXXXXXXXX XXIPVAWYED HQAPGGYTVI NKYQGKMFAA KQDVSPFNVV ENSP00000283871/1-445 GANGLANPRD FLIPIAWYED RQVPGGYTVI NKYQGKLFAA KQDVSPFNVV bmy_10106T0/1-563 GANGLANPRD FLIPVAWYED HQVPGGYT-- ---------- --DVSPFNVV ENSBTAP00000053295/1-443 GANGLANPRD FLIPVAWYED RQVPGGYTVI NKYQGKLFAA KQDVSPFNVV 651 700 BACU009291/1-714 AWHGNYTPYK YNLENFMVIN SVAFDHADPS IFTVLTAKSV RPGVAIADFV ENSTTRP00000015794/1-445 AWHGNYTPYK YNLENFMVIN SVAFDHADPS IFTVLTAKSV RPGVAIADFV ENSP00000283871/1-445 AWHGNYTPYK YNLKNFMVIN SVAFDHADPS IFTVLTAKSV RPGVAIADFV bmy_10106T0/1-563 AWHGNYTPYK YNLENFMVIN SVAFDHADPS IFTVLTAKSV RPGVAIADFV ENSBTAP00000053295/1-443 AWHGNYTPYK YNLENFMVIN SVAFDHADPS IFTVLTAKSV RPGVAIADFV 701 750 BACU009291/1-714 IFPPRWGVAD KTFRPPYYHR NCMSEFMGLI KGHYEAKPGG FLPGGGSLHS ENSTTRP00000015794/1-445 IFPPRWGVAD KTFRPPYYHR NCMSEFMGLI KGHYEAKQGG FLPGGGSLHS ENSP00000283871/1-445 IFPPRWGVAD KTFRPPYYHR NCMSEFMGLI RGHYEAKQGG FLPGGGSLHS bmy_10106T0/1-563 IFPPRWGVAD KTFRPPYYHR NCMSEFMGLI KGHYEAKQGG FLPGGGSLHS ENSBTAP00000053295/1-443 IFPPRWGVAD KTFRPPYYHR NCMSEFMGLI KGHYEAKQGG FLPG-GSLHS 751 800 BACU009291/1-714 PMTPHGPDAD CFEKASKAKL APERIADGTM KTSSMTLADD VTLGDLIMAK ENSTTRP00000015794/1-445 PMTPHGPDAD CFEKASKAKL APERIADGTM A--------- ------FMFE ENSP00000283871/1-445 TMTPHGPDAD CFEKASKVKL APERIADGTM A--------- ------FMFE bmy_10106T0/1-563 PMTPHGPDAD CFEKASKAKL APERIADGTM A--------- ------FMFE ENSBTAP00000053295/1-443 PMT-HGPDAN CFEKASKAKL APERIADGTM A--------- ------FMFE 801 850 BACU009291/1-714 DDLSGADIKA ICTEAGLMAL RERRMKVTNE DFRKSKENV- -LYEKQEGTP ENSTTRP00000015794/1-445 SSLSMAVTKW -----GL--- --KTSNCLDE NYYKCWEPLK SHFTPNSRNP ENSP00000283871/1-445 SSLSLAVTKW -----GL--- --KASRCLDE NYHKCWEPLK SHFTPNSRNP bmy_10106T0/1-563 SSLSMAVTKW -----GL--- --KTSNCLDE NYYKCWEXLK SHFTPNSRHP ENSBTAP00000053295/1-443 SSLNIAVTKW -----GL--- --KTSNCLDE NYYKCWEPLK SRFTPNSRNP 851 900 BACU009291/1-714 ---- ENSTTRP00000015794/1-445 AGTN ENSP00000283871/1-445 AEPN bmy_10106T0/1-563 AGTN ENSBTAP00000053295/1-443 AETN