KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:26 2014 Check: 00 .. Name: ENSP00000355388/1-860 Len: 883 Check: 2951 Weight: 1.00 Name: ENSBTAP00000053300/1-852 Len: 883 Check: 3853 Weight: 1.00 Name: ENSTTRP00000003126/1-858 Len: 883 Check: 682 Weight: 1.00 Name: bmy_11022T0/1-814 Len: 883 Check: 2725 Weight: 1.00 Name: BACU000176/1-856 Len: 883 Check: 4614 Weight: 1.00 // 1 50 ENSP00000355388/1-860 -----MEQVA EGARVTAVPV SAADSTEELA EVE-EGVGVV GEDNDAAARG ENSBTAP00000053300/1-852 -----AKAEA EGASVATVPG SGADGSGQLP AVEGEGFGAR GKEKDAAAKG ENSTTRP00000003126/1-858 -----AAAEA EGASAAAVPG SGADGSGKSP GVEGEGGGAV GKEKDAAAKG bmy_11022T0/1-814 --MAAAEAEA EGASAAAVPG SGADGSGQSP GVEGEGGGAV GREKDAAARG BACU000176/1-856 MAAAEAEAEA EGSSAAAVPG SGADGSGQSP GVEGEGGAAV GREKDEAAQG 51 100 ENSP00000355388/1-860 AEAFGDSEED GEDVFEVEKI LDMKTEGGKV LYKVRWKGYT SDDDTWEPEI ENSBTAP00000053300/1-852 KEAGGDSEED GENVFEVEKI LDMKTEGGKV LYKVRWKGYT ADDDTWEPEI ENSTTRP00000003126/1-858 AEAVGDSEDD GEDVFEVEKI LDMKIDGGKI VYKVRWKGYT SDDDTWEPEV bmy_11022T0/1-814 AEAVGDSEDD GEDVFEVEKI LDMKIEG--- ---------- ---------- BACU000176/1-856 AEAVGDSEDD GEDVFEVEKI LDMKVEGGKI VYKVRWKGYT PDDDTWEPEV 101 150 ENSP00000355388/1-860 HLEDCKEVLL EFRKKIAENK AKAVRKDIQR LSLNNDIFEA NSDSDQQSET ENSBTAP00000053300/1-852 HLEDCKEVLL EFRKKIADNK AKSVKKDIQR LSLNNDIFEA NSDSDQQSET ENSTTRP00000003126/1-858 HLEDCKEVLL EFRKKVADNK AKPVKKDVQR LPLNNDIFEA NSDSDQQSET bmy_11022T0/1-814 ---------- ---------- ---------R LPLNNDIFEA NSDSDQQSET BACU000176/1-856 HLEDCKEVLL EFRKKVAENK AKPVKKDVQR LPLNNDIFEA NSDSDQQSEA 151 200 ENSP00000355388/1-860 KEDTSPKKKK KKLRQREEKS PDDLKKKKAK AGKLKDKSKP DLESSLESLV ENSBTAP00000053300/1-852 KEDTSPKKKK KKVRHKEEKS PDDLKKKKAK TGKLKDKPKP DLESSSESLG ENSTTRP00000003126/1-858 KEDTSSKKKK KKLRQKEEKS PDDLKKKKAK TGKLKDKPKP DLEGSSESMV bmy_11022T0/1-814 KEDTSSKKKK KKLRQKEEKS PDDQKKKKAK TGKLKDKPKP DLESSSESLV BACU000176/1-856 NEDTSSKKKK KKLRQKEEKS PDDLKKKKAK TGKLKDKPKP DLESSPESLV 201 250 ENSP00000355388/1-860 FDLRTKKRIS EAKEELKESK KPKKDEVKET KELKKVKKGE IRDLKTKTRE ENSBTAP00000053300/1-852 FDLRTKKRIL EAKEELKESK KPKKDDIKET KELKKVKKGE IRDLKTKIRD ENSTTRP00000003126/1-858 FDLRTKKRIL EAKEELKESK KPKKDDIKET KELKKVKKGE IRDLKTKKRE bmy_11022T0/1-814 FDLRTKKRIL EAKEELKESK KPKKDDIKET KELKKVKKGE IRDLKTKKRE BACU000176/1-856 FDLRTKKRIL EAKEELKESK KPKKDDIKET KEVKKVKKGE IRDLKTKRRE 251 300 ENSP00000355388/1-860 DPKENRKTKK EKFVESQVES ESSVLNDSPF PEDDSEGLHS DSREEKQNTK ENSBTAP00000053300/1-852 DSKEIRKTKK EKCVESQVDS DLGVLSDSPL QEEDCEDLQV DNREEKQKFR ENSTTRP00000003126/1-858 DSKENRKIKK EKCVESQVDS ELSVLSDSPF QEEDSEDLHS DNRNEKQPIK bmy_11022T0/1-814 DSKENRKTKK EKCVESQVDS ELSVLNDSPF QEEDSEDLHS DNRNEKQPIK BACU000176/1-856 DSKENRKTKK EKCVESQVDF ELSVLNDSPF QEEDSEDLHS DNRSEKQPIK 301 350 ENSP00000355388/1-860 SARERAGQDM GLEHGFEKPL DSAMSAEEDT DVRGRRKKKT PRKAEDTREN ENSBTAP00000053300/1-852 GAKDKAEQEA SLDPASDIQQ DGSVSADED- EVKARRKKKK PRRTEELKES ENSTTRP00000003126/1-858 GAKDKAEPEA IQDTVSDKQQ DGSVSADED- DVKAKRKKKK LRRTEELKES bmy_11022T0/1-814 AAKDKAEPEA IQDTISDKQQ DGTVSADED- DVKAKRKKKK LRRTEELKES BACU000176/1-856 AAKDKAEPEA IQDTISDKQQ DGTVSADED- DVKAKRKKKK LRRTEELKES 351 400 ENSP00000355388/1-860 RKLENKNAFL EKKTVPKKQR NQDRSKSAAE LEKLMPVSAQ TPKGRRLSGE ENSBTAP00000053300/1-852 KKLENKSLFL EKKTTQKKQR NQDKGQSSTE LDKPVPASAL TPP------- ENSTTRP00000003126/1-858 KKLENKSL-L EKKNTQKKQR NPDKGPSGAE LDKPMAASAP AQKSSRPCAE bmy_11022T0/1-814 KKLENKSL-S EKKNTQKKQR NPDKGRSSAE FDKPMAASAP AQKSSRPCVE BACU000176/1-856 KKLENKSL-S EKKNTQKKQR NPDKGRSSAE LDKPMAASAA AQKSSRPCVE 401 450 ENSP00000355388/1-860 ERGLWSTDSA E----EDKET KRNESKEKYQ KRHDSDKEEK GRKEPKGLKT ENSBTAP00000053300/1-852 -RMSRPTDSP G----EERET KKYEPKEKYQ KKQDLDKEEK GRKEPKALKT ENSTTRP00000003126/1-858 ERGSRPADSS G----EEKET KKNEPKEKYP KKHDLDKEEK GRKEPKALKT bmy_11022T0/1-814 ERGSRPADSP GEVSTEEKET KKNEPKEKYP KKHDLDKEEK GRKEPKALKT BACU000176/1-856 ERGSRPADSP G----EEKET KKNEPKEKYP KKHDLDKEEK GRKEPKALKT 451 500 ENSP00000355388/1-860 LKEIRNAFDL FKLTPEEKND VSENNRKREE IPLDFKTIDD HKTKENKQSL ENSBTAP00000053300/1-852 FKEIRNAFDL FKLTPEEKND FPENNRKRDE IPPDYKVTED HKAKENKPLL ENSTTRP00000003126/1-858 FKEIRNAFDL FKLTPEEKSD FPENNRKREE VPPDCKVTGD HRSKENKQLL bmy_11022T0/1-814 FKEIRNAFDL FKLTPEEKND FPENNRKREE VPPDCKVTED HKTKENKQLL BACU000176/1-856 FKEIRNAFDL FKLTPEEKND FPENNRKREE VPPDCKVTED HKTKENKQLL 501 550 ENSP00000355388/1-860 KERRNTRDET DTWAYIAAEG DQEVLDSVCQ ADENSDGRQQ ILSLGMDLQL ENSBTAP00000053300/1-852 KERRNTRDET DTWAYIAAEG DQEVLDSAIR VEESPDGKQQ VLSLGMDLQL ENSTTRP00000003126/1-858 KERRNTRDET DTWAYIAADG GQEVVDSTPQ ADENSDGRQQ ILSFGMDLQL bmy_11022T0/1-814 KERRNTRDET DTWAYIAAEG GQEVVDSMSQ ADENSDGRQQ ILSFGMDLQL BACU000176/1-856 KERRNTRDET DTWAYIAAEG GQEVVDSTSQ VDENSDGRQQ ILSFGMDLQL 551 600 ENSP00000355388/1-860 EWMKLEDFQK HLDGKDENFA ATDAIPSNVL RDAVKNGDYI TVKVALNSNE ENSBTAP00000053300/1-852 EWMRLEDFQK HLDGEDENVT TADVIPSNLL RDAVKNGDYI TVKVALNSSE ENSTTRP00000003126/1-858 EWMKLEDFQK HLDGEDENFT TAEAIPSNVL RDAVKNGDYI TVKFALNSSE bmy_11022T0/1-814 EWMKLEDFQK HLDGEDENFK TANAIPSNLL RDAVKNGDYI TVKVALNSSE BACU000176/1-856 EWMKLEDFQK HLDGEDENFK TADAIPSNVL RDAVKNGDYI TVKVALNSSE 601 650 ENSP00000355388/1-860 EYNLDQEDSS GMTLVMLAAA GGQDDLLRLL ITKGAKVNGR QKNGTTALIH ENSBTAP00000053300/1-852 EYNLDQEDSS GMTLLMLAAA GGQDDLLRLL LRKGAKVNGR QKNGTTALIH ENSTTRP00000003126/1-858 EYNLDQEDSS GMTLVMLAAA GGQDDLLRLL LKKGAKVNGR QKNGTTALIH bmy_11022T0/1-814 EYNLDQEDSS GMTLVMLAAA GGQDDLLRLL LRKGAKVNGR QKNGTTALIH BACU000176/1-856 EYNLDQEDSS GMTLVMLAAA GGQDDLLRLL LRKGAKVNGR QKNGTTALIH 651 700 ENSP00000355388/1-860 AAEKNFLTTV AILLEAGAFV NVQQSNGETA LMKACKRGNS DIVRLVIECG ENSBTAP00000053300/1-852 AAEKNFLTTV AILLEAGAFV NVQQNNGETA LMKACKRGNS DIVRLVIECG ENSTTRP00000003126/1-858 AAEKNFLTTV AILLEAGAFV NVQQSNGETA LMKACKRGNS DIVRLVIECG bmy_11022T0/1-814 AAEKNFLTTV AILLEAGAFV NVQQSNGETA LMKACKRGNS DIVRLVIECG BACU000176/1-856 AAEKNFLTTV AILLEAGAFV NVQQSNGETA LMKACKRGNS DIVRLVIECG 701 750 ENSP00000355388/1-860 ADCNILSKHQ NSALHFAKQS NNVLVYDLLK NHLETLSRVA EETIKDYFEA ENSBTAP00000053300/1-852 ADCNILSKHQ NSALHFAKQC NNVLVYDLLK SHLETLSRVA EETIKDYFEA ENSTTRP00000003126/1-858 ADCNILSKHQ NSALHFAKQC NNVLVYDLLK NHLETLSRVA EETIKDYFEA bmy_11022T0/1-814 ADCNILSKHQ NSALHFAKQC NNVLVYDLLK SHLETLSRVA EETIKDYFEA BACU000176/1-856 ADCNILSKHQ NSALHFAKQC NNVLVYDLLK NHLETC---- -EILVDFPDP 751 800 ENSP00000355388/1-860 RLALLEPVFP IACHRLCEGP DFSTDFNYKP PQNIPEGSGI LLFIFHANFL ENSBTAP00000053300/1-852 RLALLEPVFP IACHRLCEGP DFSMDFNYRP PQTIPEGSGV LLFIFHANFL ENSTTRP00000003126/1-858 RLALLEPVFP IACHRLCEGP DFSMDFNYRI PQNIPE-SGI LLFIFHANFL bmy_11022T0/1-814 RLALLEPVFP IACHRLCEGP DFSMDFNYRT PQNIPEGSGV LLFIFHANFL BACU000176/1-856 R--------D SECRVVSQSP TRTLSQHL-- ------GSGV LLFIFHANFL 801 850 ENSP00000355388/1-860 GKEVIARLCG PCSVQAVVLN DKFQLPVFLD SHFVYSFSPV AGPNKLFIRL ENSBTAP00000053300/1-852 GKEVIARLCG PCSVQAVVLN DKFQLPVFLD SHFVYSFSPV AGLNKMFIRL ENSTTRP00000003126/1-858 GKEVIARLCG PCSVQAVVLN DKFQLPVFLX XXXXXXXXXX XXXXXXXXXX bmy_11022T0/1-814 GKEVIARLCG PCSVQAVVLN DKFQLPVFLD SHFVYSFSPA AGLNKLFIRL BACU000176/1-856 GKEVIARLCG PCSVQAVVLN DKFQLPVFLD SHFVYSFSPA AGLNKLFIRL 851 900 ENSP00000355388/1-860 TEAPSAKVKL ---LIGAYRV QLQ------- --- ENSBTAP00000053300/1-852 TEAPSAKVKL ---LIGAYRV QLQ------- --- ENSTTRP00000003126/1-858 XXXXXXXVKL ---LIGAYRV QLQ------- --- bmy_11022T0/1-814 TEAPSAKVKL ---LIGAYRV QLQ------- --- BACU000176/1-856 TEAPSAKVLL SGRLVPQHTT AQDPYNPRSY IGS