KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:33 2014 Check: 00 .. Name: ENSTTRP00000004838/1-517 Len: 520 Check: 6810 Weight: 1.00 Name: ENSP00000264025/1-517 Len: 520 Check: 3793 Weight: 1.00 Name: ENSBTAP00000053311/1-490 Len: 520 Check: 4096 Weight: 1.00 Name: bmy_16073T0/1-518 Len: 520 Check: 4271 Weight: 1.00 Name: BACU017351/1-478 Len: 520 Check: 9158 Weight: 1.00 // 1 50 ENSTTRP00000004838/1-517 MARMGLAGAA GLWWGLALG- -LTAFFLPXX XXXXXXXXXX XXXXXXXXXX ENSP00000264025/1-517 MARMGLAGAA GRWWGLALG- -LTAFFLPGV HSQVVQVNDS MYGFIGTDVV ENSBTAP00000053311/1-490 ---------- ---------- -------PGA QAQMVQVNDS MYGFIGTDVV bmy_16073T0/1-518 MARSEEGSSL TWLEGLMYGE TWTERQDPGA HTQVVQVNDS MYGFIGTDVV BACU017351/1-478 ---------- ---------- ---------- ---------- MYGFIGTDVV 51 100 ENSTTRP00000004838/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264025/1-517 LHCSFANPLP SVKITQVTWQ KSTNGSKQNV AIYNPSMGVS VLAPYRERVE ENSBTAP00000053311/1-490 LHCSFANPLP GVKITQVTWQ KATNGSKQNV AIYNPAMGVS VLAPYRERVE bmy_16073T0/1-518 LHCSFANPLP GVKITQVTWQ KANNGSKQNV AIYNPAMGVS VLAPYRERVE BACU017351/1-478 LHCSFANPLP GVKITQVTWQ KATNGSKQNV AIYNPAMGVS VLAPYRERVE 101 150 ENSTTRP00000004838/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264025/1-517 FLRPSFTDGT IRLSRLELED EGVYICEFAT FPTGNRESQL NLTVMAKPTN ENSBTAP00000053311/1-490 FLRPSFTDGT IRLSRLELED EGVYICEFAT FPAGNRESQL NLTVMAKPTN bmy_16073T0/1-518 FLRPSFTDGT IRLSRLELED EGVYICEFAT FPAGNRESQL NLTVMAKPTN BACU017351/1-478 FLRPSFTDGT IRLSRLELED EGVYICEFAT FPAGNRESQL NLTVMAKPTN 151 200 ENSTTRP00000004838/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264025/1-517 WIEGTQAVLR AKKGQDDKVL VATCTSANGK PPSVVSWETR LKGEAEYQEI ENSBTAP00000053311/1-490 WIEGTHAVLR ARKGQDEKVL VATCTSANGK PPSVVSWETR LKGEAEYQEI bmy_16073T0/1-518 WIEGAQAVLR ARKGQDDKVL VATCTSANGK PPSVVSWETR LKGEAEYQEI BACU017351/1-478 WIEGTQAVLR ARKGQDDKVL VATCTSANGK PPSVVSWETR LKGEAEYQEI 201 250 ENSTTRP00000004838/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264025/1-517 RNPNGTVTVI SRYRLVPSRE AHQQSLACIV NYHMDRFKES LTLNVQYEPE ENSBTAP00000053311/1-490 RNPNGTVTVI SRYRLVPSRE AHRQSLACIV NYHMDRFWES LTLNVQYEPE bmy_16073T0/1-518 RNPNGTVTVI SRYRLVPSRE AHQQSLACIV NYHMDRFRES LTLNVQYEPE BACU017351/1-478 RNPNGTVTVI SRYRLVPSRE THQQSLACIV NYHMDRFRES LTLNVQYEPE 251 300 ENSTTRP00000004838/1-517 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLNGS LPKGVEAQNR ENSP00000264025/1-517 VTIEGFDGNW YLQRMDVKLT CKADANPPAT EYHWTTLNGS LPKGVEAQNR ENSBTAP00000053311/1-490 VTIEGFDGNW YLQRMDVKLT CKADANPPAT EYHWTTLNGS LPKGVEAQNR bmy_16073T0/1-518 VTIEGFDGNW YLQRMDVKLK CKADANPPAT EYHWTTLNGS LPKGVEAQNR BACU017351/1-478 VTIEGFDGNW YLQRMDVKLK CKADANPPAT EYHWTTLNGS LPKGVEAQNR 301 350 ENSTTRP00000004838/1-517 TLFFRGPINY SLAGTYVCEA TNPIGTRSGQ VEVNITEFPY TPSPPEHGRR ENSP00000264025/1-517 TLFFKGPINY SLAGTYICEA TNPIGTRSGQ VEVNITEFPY TPSPPEHGRR ENSBTAP00000053311/1-490 TLFFRGPINY SLAGTYVCEA TNPIGTRSAQ VEVNITEFPY TPSPPEHGRR bmy_16073T0/1-518 TLFFRGPISY SLAGTYVCEA TNPIGTRSGQ VEVNITEFPY TPSPRAPGRR BACU017351/1-478 TLFFRGPINY SLAGTYVCEA TNPIGTRSGQ VEVNITEFPY TPSPREPGRR 351 400 ENSTTRP00000004838/1-517 AGPVPTAIIG GVVGSIMLVL IVVGGIVVAL RRRRHTFKGD YSTKKHVYGN ENSP00000264025/1-517 AGPVPTAIIG GVAGSILLVL IVVGGIVVAL RRRRHTFKGD YSTKKHVYGN ENSBTAP00000053311/1-490 AGPVPTAIIG GVVGSILLVL IVVGGIVVAL RRRRHTFKGD YSTKKHVYGN bmy_16073T0/1-518 AGPVPTAIIG GVVGSILLVL TVVGGIVVAL RRRRHTFKGD YSTKKHVYGN BACU017351/1-478 AGPVPTAIIG GAVGSILLVL AVVGGIVVAL RRRRHTFKGD YSTKKHVYGN 401 450 ENSTTRP00000004838/1-517 GYSKAGIPQH HPPMAQNLQY PEDSDDEKKA GPLGGSSYEE EEEEEE-GGG ENSP00000264025/1-517 GYSKAGIPQH HPPMAQNLQY PDDSDDEKKA GPLGGSSYEE EEEEEEGGGG ENSBTAP00000053311/1-490 GYSKAGIPQH HPPMAQNLQY PEDSDDDKKA GPLGGSSYEE EEDEE--GGG bmy_16073T0/1-518 GYSKAGIPQH HPPMAQNLQY PEDSDDEKKA GPLGGSSYEE EEEEE--GGG BACU017351/1-478 GYSKAGIPQH HPPMAQNLQY PEDSDDEKKA GPLGGSSYEE EEEEE--GGG 451 500 ENSTTRP00000004838/1-517 GERKAGGPHP KYDEDAKRPY FTVDEAEARQ DGCYGDRTLG YQYDPEQLDL ENSP00000264025/1-517 GERKVGGPHP KYDEDAKRPY FTVDEAEARQ DG-YGDRTLG YQYDPEQLDL ENSBTAP00000053311/1-490 GERKVGGPHS KYDEDAKRPY FTVDEAEARQ DG-YGDRTLG YQYDPEQLDL bmy_16073T0/1-518 GERKVGGPHP KYDEDAKRPY FTVDEAEARQ DGCYGDRTLG YQYDPDQLDL BACU017351/1-478 GERKVGGPHP KYDEDAKRPY FTVDEAEARQ DGCYGDRTLG YQYDPEQLDL 501 550 ENSTTRP00000004838/1-517 AENMVSQNDG SFISKKEWYV ENSP00000264025/1-517 AENMVSQNDG SFISKKEWYV ENSBTAP00000053311/1-490 AENMVSQNDG SFISKKEWYV bmy_16073T0/1-518 AENMVSQNDG SLISKKEWYV BACU017351/1-478 AENMVSQNDG SFISKKEWYV