KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:03:34 2014 Check: 00 .. Name: ENSBTAP00000053314/1-1226 Len: 1806 Check: 3111 Weight: 1.00 Name: BACU006137/1-1738 Len: 1806 Check: 7866 Weight: 1.00 Name: bmy_17568T0/1-1564 Len: 1806 Check: 5853 Weight: 1.00 Name: ENSTTRP00000001572/1-1308 Len: 1806 Check: 4073 Weight: 1.00 // 1 50 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 ---------- ---------- ---------- ---------- ---------- bmy_17568T0/1-1564 ---------- ---------- ---------- ---PALQPGN FSADEAGAQL ENSTTRP00000001572/1-1308 MGAASGRRWP RPPLLSLLLL LLPPPPPVVL ALDPALQPGN FSADEAGAQV 51 100 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ----QEEAAL LSQEFSEAWG BACU006137/1-1738 ---------- ------MVAG EAAHRGLTAK LPVKTEEAAL LSQEFAEVWG bmy_17568T0/1-1564 FAESFNSSAE QVLFHSTAAS WAHDTDINEE NARRQEEAAL LSQEFSEVWG ENSTTRP00000001572/1-1308 FAKSFNSSAE QVLFHSTAAS WAHDTNITEE NARRQEEAAL ISQEFSEVWG 101 150 ENSBTAP00000053314/1-1226 QKAKDLFDPV WQNFTDPTLL RIIGAVRTLG PANLDLEKRQ KQYNSLLSNM BACU006137/1-1738 QKAKALFDPI WQNFTNPTLR RIISAVRTLG PANLPLEERQ -QYNSLLSNM bmy_17568T0/1-1564 QKAKALFDPI WQNFTDPTLR RIISAVRTLG PANLPLEERQ -QYNSLLSNM ENSTTRP00000001572/1-1308 QKAKALFDPI WQHFTDPTLR RIISAVRTLG PANLPLEERQ -QYNSLLSNM 151 200 ENSBTAP00000053314/1-1226 SRIYSTAKVC FPNKTAPCWS LDPELTNILA SSRSYTLLLY AWEGWHNAAG BACU006137/1-1738 SRIYSTAKVC FPNKTATCWS LDPELTNILA ASRSYALLLY AWEGWHNAVG bmy_17568T0/1-1564 SRIYSTAKVC FPNKTATCWS LDPELTNILA ASRSYALLLY AWEGWHNAVG ENSTTRP00000001572/1-1308 SRIYSTAKVC FPNKTATCWS LDPELTNILA ASRSYALLLY AWEGWHNAVG 201 250 ENSBTAP00000053314/1-1226 IPLKPLYQDF TALSNEAYKQ DGFSDTGAYW RSWYDSPTFT EDLERLYQQL BACU006137/1-1738 IPLKPLYQNF TALSNAAYRQ DGFSDTGAYW RSWYDSPTFT EDLEHLYHQL bmy_17568T0/1-1564 IPLKPLYQNF TALSNAAYKQ DGFSDTGAYW RSWYDSPTFT EDLEHLYHQL ENSTTRP00000001572/1-1308 IPLKPLYQKF TALSNAAYKQ DGFSDTGAYW RSWYDSRTFT EDLEHLYHQL 251 300 ENSBTAP00000053314/1-1226 EPLYLNLHAY VRRALHRRYG DRYINLRGPI PAHLLGNMWA QSWENIYDTV BACU006137/1-1738 EPLYLNLHAY VRRALHRRYG DRFINLRGPI PAHLLGDMWA QSWDRIYDMV bmy_17568T0/1-1564 EPLYLNLHAY VRRALHRRYG DRFINLRGPI PAHLLGDMWA QSWDKIYDMV ENSTTRP00000001572/1-1308 EPLYLNLHAY VRRALHRRYG DRFINLRGPI PAHLLGDMWA QSWDKIYDMV 301 350 ENSBTAP00000053314/1-1226 VPFPDKPNLD VTDVMVQKGW NATHMFRVAE EFFTSLGLLP MPPEFWAESM BACU006137/1-1738 VPFSDKPNLD VTSTMVQKGW NATHMFRVAE EFFTSLGLLP MPPEFWAESM bmy_17568T0/1-1564 VPFSDKPNLD VTSTMVQKGW NATHMFRVAE EFFTSLGLLP MPPEFWAESM ENSTTRP00000001572/1-1308 VPFSDKPNLD VTSTMVQKGW NATHMFRVAE ELFTSLGLLP MPHEFWAESM 351 400 ENSBTAP00000053314/1-1226 LEKPSDGREV VCHASAWDFY NRKDFRIKQC TRVTMDQLST VHHEMGHVQY BACU006137/1-1738 LEKPSDGREV VCHASAWDFY NRKDFRIKQC TQVTMDQLST VHHEMGHVQY bmy_17568T0/1-1564 LEKPSDGREV VCHASAWDFY NRKDFRIKQC TQVTMDQLST VHHEMGHVQY ENSTTRP00000001572/1-1308 LEKPSDGREV VCHASAWDFY NRKDFRIKQC TQVTMDQLST VHHEMGHVQY 401 450 ENSBTAP00000053314/1-1226 YLQYKGQHVS LRRGANPGFH EAIGDVLALS VSTPAHLHKI GLLDQVTNDT BACU006137/1-1738 YLQYKDQHVS LRQGANPGFH EAIGDVLALS VSTPAHLYKI GLLDHVTNDR bmy_17568T0/1-1564 YLQYKDQHVS LRQGANPGFH EAIGDVLALS VSTPAHLYKI GLLDHVTNDT ENSTTRP00000001572/1-1308 YLQYKDQHVS LRQGANPGFH EAIGDVMALS VSTPAHLHKI GLLDHVTNDK 451 500 ENSBTAP00000053314/1-1226 ESDINYLLKM ALEKIAFLPF GYLVDQWRWG VFSGRTPPSR YNYDWWYLRT BACU006137/1-1738 ESDINYLLKM ALEKIAFLPF GYLVDQWRWG VFSGRTPPSL YNYDWWYLRT bmy_17568T0/1-1564 ESDINYLLKM ALEKIAFLPF GYLVDQWRWG VFSGRTPPSL YNYDWWYLRT ENSTTRP00000001572/1-1308 ESDINYLLKM ALEKIAFLPF GYLVDQWRWG VFSGRTPPSL YNYDWWYLRT 501 550 ENSBTAP00000053314/1-1226 KYQGICPPVV RNETHFDAGA KFHVPNVTPY IRYFVSFVLQ FQFHEALCKE BACU006137/1-1738 KYQGICPPVV RNETHFDAGA KFHVPNVTPY IRYFVSFVLQ FQFHQALCKE bmy_17568T0/1-1564 KYQGICPPVV RNETHFDAGA KFHVPNVTPY IRYFVSFVLQ FQFHQALCEE ENSTTRP00000001572/1-1308 KYQGICPPVV RNETHFDAGA KFHVPNVTPY IRYFVSFVLQ FQLHQALCKE 551 600 ENSBTAP00000053314/1-1226 AGHQGPLHQC DIYQSTQAGA KL-------- --RALLQAGS SRPWQEVLKD BACU006137/1-1738 AGHQGPLHQC DIYQSTQAGA KLRCVGHREG SGRAMLQAGS SRPWQEVLKD bmy_17568T0/1-1564 AGHQGPLHQC DIYQSTQAGA KL-------- --RAMLQAGS SRPWQEVLKD ENSTTRP00000001572/1-1308 AGHQGPLHQC DIYQSTQAGA KL-------- --RALLQAGS SRPWQEVLKD 601 650 ENSBTAP00000053314/1-1226 MVGSDNLDAR PLLSYFQPVT QWLEEQNQQN GEVLGWPEYQ WRPPMPDNYP BACU006137/1-1738 MVGSDSLDAQ PLLNYFQPVT QWLQEQNQQN GEVLGWPEYQ WRPPMPDNYP bmy_17568T0/1-1564 MVGSDSLDAQ PLLNYFQPVT QWLQEQNQQS GEVLGWPEYQ WRPPMPDNYP ENSTTRP00000001572/1-1308 MVGSDSLDAQ PLLNYFQPVT QWLQEQNRQN GEVLGWPEYQ WRPPMPDNYP 651 700 ENSBTAP00000053314/1-1226 EGIDLVSDED EARKFVEEYD RRSQVVWNEY AEANWNYSTD ISTDNSKLLM BACU006137/1-1738 EGIDLVSDEA EASKFVEECD QRSRVVWNEY AEANWDYSTN ITKEGSKILL bmy_17568T0/1-1564 EGIDLVSDEA EASKFVEECD QRSRVVWNEY AEANWDYSTN ITKEGSKILL ENSTTRP00000001572/1-1308 EGIDLVSDEA EASRFVEEYD RRSRVVWNEY AEASWDYNTN ITKEGSKILL 701 750 ENSBTAP00000053314/1-1226 EKNLQMANHT VKYGTWARKF DVTNFQNATM KRMIKKIQDL ERAALPTKEL BACU006137/1-1738 EKNVQMANHT VKYGTWARKF DVTNFQNATM KRMIKKIQDL ERAALPVKEL bmy_17568T0/1-1564 EKNVQMANHT VKYGTWARKF DVTNFQNATM KRMIKKIQDL ERAALPVKEL ENSTTRP00000001572/1-1308 EKNVQMANHT VKYGTWARKF DVTNFQNATM KRMIKKIQDL ERAALPVREL 751 800 ENSBTAP00000053314/1-1226 EEYNQILLDM ETVYSVASVC HENGTCLRLE PVLTQEVSTP RKLAPLIWAW BACU006137/1-1738 EEYNQILLDM ETTYSVASVC YSNGTCLRLE PDLTNLMATS RNYEELLWAW bmy_17568T0/1-1564 EEYNQILLDM ETTYSVASVC HSNGTCLQLE PDLTNLMATS RNYEELLWAW ENSTTRP00000001572/1-1308 EQYNQILLDM ETTYSVASVC HSNGTCLQLE PDLTHLMATS RNYEELLWAW 801 850 ENSBTAP00000053314/1-1226 AVKSLPVVTA ISPSFPRPVL PLTNKAARLN GYQDGGDSWR SMYEMPFLEE BACU006137/1-1738 KGWRDKVGRS ILPYFPK-YV ELTNKAARLN GYEDGGDSWR SMYEMPFLEY bmy_17568T0/1-1564 KGWRDKVGRS ILPYFPK-YV ELTNKAARLN GYEDGGDSWR SMYEMPFLEY ENSTTRP00000001572/1-1308 KGWRDKVGRS ILPYFPQ-YV ELSNKAARLN GYKDGGDSWR SMYEMPFLEY 851 900 ENSBTAP00000053314/1-1226 ELEQLFQELQ PLYLNLHAYV RRALHRHYGP DVINLEGPIP AHLLGNMWAQ BACU006137/1-1738 DLEQLFQELQ PLYLNLHAYV RRALYRFYGS EFINLEGPIP AHLLGNMWAQ bmy_17568T0/1-1564 DLEQLFQELQ PLYLNLHAYV RRALYRFYGS ELINLEGPIP AHLLGNMWAQ ENSTTRP00000001572/1-1308 ELEHLFQELQ PLYLNLHAYV RRALYRFYGS ELINLEGPIP AHLLGNMWAQ 901 950 ENSBTAP00000053314/1-1226 SWSNIYDLVA PFPSAPKMDA TEAMIKQGWT PLRMFKEADN FFTSLGLLPM BACU006137/1-1738 SWSNIYDLVV PFPSAPRMDA TEAMIKQGWT PQRMFKEADD FFTSLGLLPV bmy_17568T0/1-1564 SWSNIYDLVV PFPSAPRMDA TEAMIKQGWT PQRMFKEADN FFTSLGLLPV ENSTTRP00000001572/1-1308 SWSNIYDLVV PFPSAPRMDA TEAMIKQGWT PQRMFKEADS FFTSLGLLPV 951 1000 ENSBTAP00000053314/1-1226 PPEFWNKSML EKPTDGREVV CHASAWDFFN GKDFRIKQCT SVNMEDLVVA BACU006137/1-1738 PPEFWNKSML EKPTDGREAV CHASAWDFFN GRDFRIKQCT TVNMEDLVVA bmy_17568T0/1-1564 PPEFWSKSML EKPTDGREVV CHASAWDFFN GKDFRIKQCT TVNMEDLVVA ENSTTRP00000001572/1-1308 PPEFWSKSML EKPTDGREVV CHASAWDFFN GKDFRIKQCT TVNMEDLVVA 1001 1050 ENSBTAP00000053314/1-1226 HHEMGHIQYF MQYKDLPVTF REGANPGFHE AIGDVLALSV STPTHLHKIN BACU006137/1-1738 HHEMGHIQYF MQYKDLPVTF REGANPGFHE AIGDVLALSV STPKHLHKIN bmy_17568T0/1-1564 HHEMGHIQYF MQYKDLPVTF REGANPGFHE AIGDVLALSV STPKHLHKIN ENSTTRP00000001572/1-1308 HHEMGHIQYF MQYKDLPVTF REGANPGFHE AIGDVLALSV STPKHLHKIN 1051 1100 ENSBTAP00000053314/1-1226 LLSSGDGGYE EDINFLMKMA LEKIAFIPFS FLVDQWRWRV FDGSVTRENY BACU006137/1-1738 LLSSGDGSYE EDINFLMKMA LDKIAFVPFS YLVDQWRWRV FDGSITKENY bmy_17568T0/1-1564 LLSSGDGSYE EDINFLMKMA LDKIAFIPFS YLVDQWRWRV FDGSITKENY ENSTTRP00000001572/1-1308 LLSSGDGSYE EDINFLMKMA LDKIAFVPFS YLVDQWRWRV FDGSITKENY 1101 1150 ENSBTAP00000053314/1-1226 NQEWWSLRLK YQGVCPPLAR SQDDFDPGAK FHIPASVPYV RYFVSFVIQF BACU006137/1-1738 NQEWWSLRLK YQGLCPPVAR SQGDFDPGAK FHIPSSVPYI RYFVSFVIQF bmy_17568T0/1-1564 NQEWWSLRLK YQGLCPPVAR SQGDFDPGAK FHIPSSVPYI RYFVSFVIQF ENSTTRP00000001572/1-1308 NQEWWSLRLK YQGLCPPVAR SQGDFDPGAK FHIPSSVPYI RYFVSFVIQF 1151 1200 ENSBTAP00000053314/1-1226 QFHQALCQAA GHQGPLHKCD IYQSKEAGKL LADAMKLGFS QPWPEAMRLI BACU006137/1-1738 QFHEALCQAA GHKGPLHECD IYQSQEAGKR LADAMKLGSS RPWPEAMRLI bmy_17568T0/1-1564 QFHEALCQAA GHKGPLHECD IYQSQEAGKR LADAMKLGFS RPWPEAMRLI ENSTTRP00000001572/1-1308 QFHEALCQAA GHKGPLHKCD IYQSQEAGKR LADAMKLGFS RPWPEAMRLI 1201 1250 ENSBTAP00000053314/1-1226 TGQSNMSAAA MMTYFKPLLD WLVTENGRHG EKLGWPQYNW TPNSARLEGP BACU006137/1-1738 TGQPNMSAAA MMTYFKPLLD WLVTENGRHG EKLGWPQYNW TPNSARLEDS bmy_17568T0/1-1564 TGQPNMSAAA MMTYFRPLLD WLVTENRRHG QKLGWPQYNW TPNSARLEDS ENSTTRP00000001572/1-1308 TGQPKMSAAA MMTYFKPLLD WLVTENTRHG EKLGWPQYNW MPNSARSEAS 1251 1300 ENSBTAP00000053314/1-1226 FVGSGRVNFL GLNLEEQQAR VGQWVLLFLG VALL------ ---------- BACU006137/1-1738 FPGSGRVNFL GLSLEEEQAR VGQWVLLFLG VALLVATLGL TQRLFSIRHR bmy_17568T0/1-1564 FPGSGRVNFL GLSLEEEQAR VGQWVLLFLG VALL------ ---------- ENSTTRP00000001572/1-1308 FPGSGRVSFL GLNLEEQQAR VGQWVLLFLG VALL------ ---------- 1301 1350 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 SLHQPHPEPQ FGSELLPWLR TEGDQNSDKL YNETVAKAFL QFYEHTAQVV bmy_17568T0/1-1564 ---------- ---------- ---------L YNETVAKAFL QFYEHTAQVV ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ------VATL GLTQRLFSIR BACU006137/1-1738 WNQFMEATWN YVTNITKKNR EEMLDKDVER PQHTLYLGMR ALLFKITSFQ bmy_17568T0/1-1564 WNQFMEATWN YVTNITKKNR EEMLDKDVAR PQHMLYFGTW ALLFKITNFQ ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ------VATL GLAYRLFSIR 1401 1450 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 DPAVKRVLSE LQNFDRAALP KEELRECSQI VAHMETTYSM AQVCLNAGPC bmy_17568T0/1-1564 DPPVKRVLSK LQNFDRAALP KEELRELGS- ---------- ---------- ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 LPLEPGYKDM GALWRSTYES DTLEEDLEQL FQELQPLCLN LHAYVRRALY bmy_17568T0/1-1564 ---------- ---------S KPWPEVLQKV TGETKVSTKA LMTYFKPLLN ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 RFYGPELIDP DPRGPSLPTF WVKPQLAAEA GRAEWASKQA GEQTLSRGRA bmy_17568T0/1-1564 WL----VTEN VRRGEILGWP HFSCSFEGKA LNFGLEGRCQ RLREKARGSQ ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSBTAP00000053314/1-1226 ----HHSLRR PHRGPQFGS- ---------- ---------- ---------- BACU006137/1-1738 DLLPPLSPPP PLPGNVWAQS WVNILDPVLP FPEKPPEDIT KIMRGQQWKS bmy_17568T0/1-1564 ILSDHHEVPS PIPPARQDS- --YVFHRERN RQGGIPGSGA GPCPGQIWAV ENSTTRP00000001572/1-1308 ----HHSLHH PHSASQFDS- ---------- ---------- ---------- 1601 1650 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 EKMFQEAEKF VTSPGLLSTP PGFWKNSKME RPTDGREVEC HTSAWDFYNR bmy_17568T0/1-1564 G--------- VAGPELCHVT GGPAAGLQAV HPGKKLTGPR HQCVGHQYAG ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1651 1700 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 KDFRRIKKCT EVTIEDLLSI FHQMGRIQYF LQYKNPSVIF RAGANPAFAE bmy_17568T0/1-1564 ------HQCT QVTTQGLLSR HSH------- ---------- ---------- ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1701 1750 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- ---------- BACU006137/1-1738 AVGSVITLSA SSHKHLLSRG LLSHQHQDEE EDVGFLMNVA LEKIAFIPFA bmy_17568T0/1-1564 ------GAPP SCQKTVAAAG PLPHPDA--- ---------- ---------- ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- ---------- 1751 1800 ENSBTAP00000053314/1-1226 ---------- ---------- ---------- ---------- --------EV BACU006137/1-1738 YLVDLFRWKV FGGTIEKAVY NQEWWNLRYF LILVLQFQFH EALCKASGHV bmy_17568T0/1-1564 ---------- ---------- ---------- ---VLNXPDH SDFHTAQQEA ENSTTRP00000001572/1-1308 ---------- ---------- ---------- ---------- --------EV 1801 1850 ENSBTAP00000053314/1-1226 ELRHS- BACU006137/1-1738 GLLHPT bmy_17568T0/1-1564 SVDES- ENSTTRP00000001572/1-1308 QLKHS-