KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:46 2014 Check: 00 .. Name: ENSP00000356978/1-477 Len: 557 Check: 5502 Weight: 1.00 Name: ENSBTAP00000053328/1-477 Len: 557 Check: 2819 Weight: 1.00 Name: ENSTTRP00000008725/1-475 Len: 557 Check: 9671 Weight: 1.00 Name: bmy_06340T0/1-557 Len: 557 Check: 5831 Weight: 1.00 Name: BACU003857/1-477 Len: 557 Check: 2397 Weight: 1.00 // 1 50 ENSP00000356978/1-477 MGRTVVVLGG GISGLAASYH LSRAPCPPKV VLVESSERLG GWIRSVRGPN ENSBTAP00000053328/1-477 MGRTVVVLGG GISGLAASYY LSRAPCPPKV VLVEGSERLG GWIRSVRGPD ENSTTRP00000008725/1-475 MGRTVVVLGG GISGLAASYH LSRAPCPPKV VLVEGSERLG GWIRSVRGPD bmy_06340T0/1-557 MGRTVVVLGG GISGLAASYH LSRAPCPPKV VLVESSERLG GWIRSVRGPD BACU003857/1-477 MGRTVVVLGG GISGLAASYH LSRAPCPPKV VLVEGSERLG GWIRSVRGPD 51 100 ENSP00000356978/1-477 GAIFELGPRG IRPAGALGAR TLLLVSELGL DSEVLPVRGD HPAAQNRFLY ENSBTAP00000053328/1-477 GAIFELGPRG IRPAGALGAR TLLLVSELGL DSEVLPVRGD HPAAQNRFLY ENSTTRP00000008725/1-475 GAVFELGPRG IRPAGVLGAR TLLMVSELGL DSEVLPVRGD HAAAQNRFLY bmy_06340T0/1-557 GAVFELGPRG IRPAGVLGAR TLLMVSELGL DSEVLPVRGD HAAAQNRFLY BACU003857/1-477 GAVFELGPRG IRPAGVLGAR TLLMVSELGL DSEVLPVRGD HAAAQNRFLY 101 150 ENSP00000356978/1-477 VGGALHALPT GLRGLLRPSP PFSKPLFWAG LRELTKPRGK EPDETVHSFA ENSBTAP00000053328/1-477 VGGALHALPS GIRGLLRPSP PFSKPLFWAG LRDLTTPRGK DPDETVHSFA ENSTTRP00000008725/1-475 VGGTLHALPS GIRGLLRPSP PFSKPLFWAG LKELTTPRGK DPDETVHSFA bmy_06340T0/1-557 VGGALHALPS GIRGLLRPSP PFSKPLFWAG LKELTTPRGK DPDETVHSFA BACU003857/1-477 VGGALHALPS GIRGLLRPSP PFSKPLFWAG LKELTTPRGK DPDETVHSFT 151 200 ENSP00000356978/1-477 QRRLGPE--- ---------- ---------- ---------- ---------- ENSBTAP00000053328/1-477 QRRLGPE--- ---------- ---------- ---------- ---------- ENSTTRP00000008725/1-475 QRRLGPE--- ---------- ---------- ---------- ---------- bmy_06340T0/1-557 ERRLGPEVTP PRSPQIPPLL NQLQIPVLAP PSRASSVSSE NALFSSYPWD BACU003857/1-477 ERRLGPE--- ---------- ---------- ---------- ---------- 201 250 ENSP00000356978/1-477 ---------- ---------- ---------- -------VAS LAMDSLCRGV ENSBTAP00000053328/1-477 ---------- ---------- ---------- -------VAS LAMDSLCRGV ENSTTRP00000008725/1-475 ---------- ---------- ---------- -------VAS LAMDSLCRGV bmy_06340T0/1-557 CFPTKPHPTS PLFSAKQGQW KLVQLIPWSL NPSLTLKVAS LAMDSLCRGV BACU003857/1-477 ---------- ---------- ---------- -------VAS LAMDSLCRGV 251 300 ENSP00000356978/1-477 FAGNSRELSI RSCFPSLFQA EQTHRSILLG LLLGAGRTPQ PDSALIRQAL ENSBTAP00000053328/1-477 FAGNSRELSI RSCFPSLFQA EQTHRSILLG LLLGAGRGPQ LDSALIRQAQ ENSTTRP00000008725/1-475 FAGNSRELSI RSCFPSLFQA EQTHRSILLG LLLGAG--PQ PDSALIRQAR bmy_06340T0/1-557 FAGNSRELSM RSCFPSLFQA EQTHRSILLG LLLGAGQGPQ PDSALIRQAR BACU003857/1-477 FAGNSRELSM RSCFPSLFQA EQTHRSILLG LLLGAGQGPQ PDSALIRQAR 301 350 ENSP00000356978/1-477 AERWSQWSLR GGLEMLPQAL ETHLTSRGVS VLRGQPVCGL SLQAEGRWKV ENSBTAP00000053328/1-477 AERWSQWSLR GGLETLPQAL HAHLTSRGVS VLQGQPVCGL SLQAEGRWKV ENSTTRP00000008725/1-475 AERWSQWSLR GGLETLPQAL NTHLTSRGVS VLRGQPVCGL SLEAEGCWKV bmy_06340T0/1-557 AERWSQWSLR GGLETLPQAL NTHLTSRGVS VLKGQPVCGL SLQAEGCWKV BACU003857/1-477 AERWSQWSLR GGLETLPQAL NTHLTSRGVS VLRGQPVCGL SLQAEGCWKV 351 400 ENSP00000356978/1-477 SLRDSSLEAD HVISAIPASV LSELLPAEAA PLARALSAIT AVSVAVVNLQ ENSBTAP00000053328/1-477 SLEDSSLEAD HIISAIPASV LSKLLPAEAT PLARALSTIT AVSVAVVNLQ ENSTTRP00000008725/1-475 SLGDSNLEAD HIISAIPASV LSKLLPAEAA PLARALSTIT AVSVAVVNLQ bmy_06340T0/1-557 SLGDSNLEAD HIISAIPASV LSKLLPAEAA PLARALSTIT AVSVAVVNLQ BACU003857/1-477 SLGDSNLEAD HIISAIPASV LSKLLPAEAA PLARALSTIT AVSVAVVNLQ 401 450 ENSP00000356978/1-477 YQGAHLPVQG FGHLVPSSED PGVLGIVYDS VAFPEQDGSP PGLRVTVMLG ENSBTAP00000053328/1-477 YRGARLPVQG FGHLVPSSED PVILGIVYDS VAFPEQDGSL PGLRLTVMLG ENSTTRP00000008725/1-475 YRGARLPVQG FGHLVPSSED PGILGIVYDS VAFPEQDGSP PGLRVTVMLG bmy_06340T0/1-557 YRGARLPVQG FGHLVPSSED PGILGIVYDS VAFPEQDGSP PGLRVTVMLG BACU003857/1-477 YRGARLPVQG FGHLVPSSED PGILGIVYDS VAFPEQDGSP PGLRVTVMLG 451 500 ENSP00000356978/1-477 GSWLQTLEAS GCVLSQELFQ QRAQEAAATQ LGLKEMPSHC LVHLHKNCIP ENSBTAP00000053328/1-477 GSWLQTLEAR GCVLSQELLQ QEAEKAAATQ LGLNEPPSHC LVHLHKNSIP ENSTTRP00000008725/1-475 GSWLRTLEAR GSVLSQELFQ KEAEKAAATS LGLKEPPSHC LVHLHKNCIP bmy_06340T0/1-557 GSWLQTLEAR GSVLSQELFQ KEAEKAAATQ LGLKEPPSHC LVHLHKNCIP BACU003857/1-477 GSWLQTLEAR GSVLSQELFQ KEAEKAAATQ LGLKEPPSHC LVHLHKNCIP 501 550 ENSP00000356978/1-477 QYTLGHWQKL ESARQFLTAH RLPLTLAGAS YEGVAVNDCI ESGRQAAVSV ENSBTAP00000053328/1-477 QYTLGHWQKL ESAAQFLAAQ KLPLTLAGAS YEGVAVNDCI ESGRQAAARV ENSTTRP00000008725/1-475 QYTLGHWQKL ESATQFLAAQ KLPLTLAGAS YEGVAVNDCI ESGRQAAARV bmy_06340T0/1-557 QYTLGHWQKL ESATQFLAAQ KLPLTLAGAS YEGVAVNDCI ESGRQAAARV BACU003857/1-477 QYTLGHWQKL ESATQFLAAQ KLPLTLAGAS YEGVAVNDCI ESGRQAAARV 551 600 ENSP00000356978/1-477 LGTEPNS ENSBTAP00000053328/1-477 LGTEPNS ENSTTRP00000008725/1-475 LGTEPNS bmy_06340T0/1-557 LGTEPNS BACU003857/1-477 LGTEPNS