KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:47 2014 Check: 00 .. Name: ENSTTRP00000015215/1-1132 Len: 1339 Check: 6359 Weight: 1.00 Name: ENSP00000427567/1-1143 Len: 1339 Check: 4339 Weight: 1.00 Name: ENSBTAP00000053330/1-1045 Len: 1339 Check: 4535 Weight: 1.00 Name: bmy_18175T0/1-842 Len: 1339 Check: 9940 Weight: 1.00 Name: BACU013578/1-1150 Len: 1339 Check: 1810 Weight: 1.00 // 1 50 ENSTTRP00000015215/1-1132 MHVMNCVSLV SDKGNGNIAT TAGFMIGQTP PP-PPPPLPP PPPPCPYSG- ENSP00000427567/1-1143 MHVMNCVSLV SDKENGNIAT APGFMIGQTP PPAPPPPPPP PPPSPPCSCS ENSBTAP00000053330/1-1045 MHVMNCVSLV SDKGNGNTAM AAGFMTAQAP ---PPPPPPP PPPLCPYSX- bmy_18175T0/1-842 MLAL------ ---------- ---------- ---------- ---------- BACU013578/1-1150 MSVL------ ---EKGRVTR AAAIWV-ISP GVGDPLPKEN EPVNEQVAC- 51 100 ENSTTRP00000015215/1-1132 --KGFPPPPP PPPPPLPGEY LFPPPPPGLP PTSHLNGYSH LGKKKRIRSF ENSP00000427567/1-1143 REECPSSPPP PPPPPLPGEP PIPPPPPGLP PTTHMNGYSH LGKKKRMRSF ENSBTAP00000053330/1-1045 ---------- ----PLPGGP PVPPPPPGLP PNSHLNGYSQ LGKKKRMRSF bmy_18175T0/1-842 ---------- ---------- ------KGLP PTSHLNGYSH LGKKKRIRSF BACU013578/1-1150 ---------- ---------- -----SERLP PTSHLNGYSH LGKKKRIRSF 101 150 ENSTTRP00000015215/1-1132 FWKTIPEEQV RGKTNIWTLA AREQHHYQID TKSVEELFGQ QENTTKSSPS ENSP00000427567/1-1143 FWKTIPEEQV RGKTNIWTLA ARQEHHYQID TKTIEELFGQ QEDTTKSSLP ENSBTAP00000053330/1-1045 YWKTIPEEQV RGKTNIWTLA ASQQHHYQID TKTVEELFGQ QEDATMAPPS bmy_18175T0/1-842 FWKTIPEEQV RGKTNIWTLA ARQQHHYQID TKSIEELFGQ QENTTNSSPS BACU013578/1-1150 FWKTIPEEQV RGKTNIWTLA ARQQHHYQID TKSIEELFGQ QENTTIASPS 151 200 ENSTTRP00000015215/1-1132 GRGGPLNSSF REGREEITIL DAKRSMNIGI FLKQFKXXXX XXXXXXX-XX ENSP00000427567/1-1143 RRGRTLNSSF REAREEITIL DAKRSMNIGI FLKQFKKSPR SIVEDIH-QG ENSBTAP00000053330/1-1045 RRGGSLHSSS REAREEITLL DAKRSMNIGI FLKQFKKSPP SIVEDIH-HG bmy_18175T0/1-842 GRGGPLNSSF REGREEITIL DAKRSMNIGI FLKQFKKSPL SIVEDIH-QG BACU013578/1-1150 GRGGPLNSSF REGREEITIL DAKRSMNIGI FLKQFKK--L SNCALLHFDA 201 250 ENSTTRP00000015215/1-1132 XXXXXXX--- XXXXXXXXXX XXXXXIKKLK AFSGDVAKLS LADSFLHCLI ENSP00000427567/1-1143 KSEHYGS--- ETLREFLKFL PESEEVKKLK AFSGDVSKLS LADSFLYGLI ENSBTAP00000053330/1-1045 KSEHYGS--- ETLREFLKLL PESEEIKKLK TFSGDVAKLS LADSFLHCLI bmy_18175T0/1-842 KSEHYGS--- ETLCEFLKLL PESEEIKKLK AFSGDVAKLS LADSFLHCLI BACU013578/1-1150 DISVCGSLQI PLLCAFELLF PIFQEIKKLK AFSGDVAKLS LADSFLHCLI 251 300 ENSTTRP00000015215/1-1132 QVPNCSLRIE AMVLKKEFLP SCSSLYTDIT ILRTATK--- ---------- ENSP00000427567/1-1143 QVPNYSLRIE AMVLKKEFLP SCSSLYTDIT VLRTAIK--- ---------- ENSBTAP00000053330/1-1045 QVPNYSLRIE AMVLKKEFLP SCSSLYTDMT ILRKATK--- ---------- bmy_18175T0/1-842 QVPNYSLRIE AMVLKKEFLP SCSSLYTDIT ILRTATKVCG VCVVVCVYVT BACU013578/1-1150 QVPNYSLRIE AMVLKKEFLP SCSSLYTDIT ILRTATK--- ---------- 301 350 ENSTTRP00000015215/1-1132 ---------- -------ELM SCEELHSILH LVLQAGNIMN AGGYAGNAVG ENSP00000427567/1-1143 ---------- -------ELM SCEELHSILH LVLQAGNIMN AGGYAGNAVG ENSBTAP00000053330/1-1045 ---------- -------ELM SCEELHSILH LVLQAGNIMN AGGYAGNAVG bmy_18175T0/1-842 CVCGVFSHPR PLQTLTPELM SCEELHSILH LVLQAGNIMN AGGYAGNAVG BACU013578/1-1150 ---------- -------ELM SCEELHSILH LVLQAGNIMN AGGYAGNAVG 351 400 ENSTTRP00000015215/1-1132 FKLSSLLKLA XXXXXXXXXX XXXXXXXEAQ KKDAVLLNFS EKLHHVQEAA ENSP00000427567/1-1143 FKLSSLLKLA DTKANKPGMN LLHFVAQEAQ KKDTILLNFS EKLHHVQKTA ENSBTAP00000053330/1-1045 FKLSSLLKLA DTKANKPGMN LLHFVAQEAQ KKDAVLLNFS EKLLHVQEAA bmy_18175T0/1-842 FKLSSLLKLA DTKANKPGMN LLHFVAQEAQ KKDAVLLNFS EKLHHVQEAA BACU013578/1-1150 FKLSSLLKLA DTKANKPGMN LLHFVAQEAQ KKDAVLLNFS EKLHHVQEAA 401 450 ENSTTRP00000015215/1-1132 RLSLDNTEAE LHSLFVRTRS LKENVQRDGE LCQQMEDFLQ XXXXXXXXXX ENSP00000427567/1-1143 RLSLENTEAE LHLLFVRTKS LKENIQRDGE LCQQMEDFLQ FAIEKLRELE ENSBTAP00000053330/1-1045 RLSLDNTEAE LHSLFVRTKS LKENIERDRE LCQQMEDFLQ FALEKLAELE bmy_18175T0/1-842 RLSLDNTEAE LHSLFVRTRS LKENVQWDGE LCQQMEDFLQ FALEKLAELE BACU013578/1-1150 RLSLDNTEAE LHSLFVRTRS LKENVQRDGE LCQQMEDFLQ FALRKLAELE 451 500 ENSTTRP00000015215/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXCL QIFRDFCVKF NNAVKDNHDR ENSP00000427567/1-1143 CWKQELQDEA YTLIDFFCED KKTMKLDECF QIFRDFCTKF NKAVKDNHDR ENSBTAP00000053330/1-1045 QWKRELQDEA HTLIDFFCED KDTVKLDECL QIFRDFCIRF NKAVKDNHDR bmy_18175T0/1-842 RCKQELQDEA HTLIDFFCED KDTVKLDECL QIFRDFCVKF NKAVKDNHDR BACU013578/1-1150 RWKQELQDEA HTLIDFFCED KDTVKLDECL QIFRDFCVKF NKAVKDNHDR 501 550 ENSTTRP00000015215/1-1132 EVQELRRLQR LKELEQKRHF WPAGELG-FG RSSSENDVEL LTKRGVEDLP ENSP00000427567/1-1143 EAQELRQLQR LKEQEQKQRS WATGELGAFG RSSSENDVEL LTKKGAEGLL ENSBTAP00000053330/1-1045 QVQELRQRQR LKELEQKRRS WTAGEFG-FG RSSSENDVEL LTKRGAEDLP bmy_18175T0/1-842 EVQELRRLQR LKELEQKRHS WTAGELG-FG RSSSENDVEL LTKRGVEDLP BACU013578/1-1150 EVQELRRLQR LKELGQKRHS -TAGELG-FG RSSSENDVEL LTKRGVEDLP 551 600 ENSTTRP00000015215/1-1132 PFLHSRPISL S---YRPPNT RRSRLSLSIV ADRELLTFLE SSTDSPEEL- ENSP00000427567/1-1143 PFLHPRPISP SSPSYRPPNT RRSRLSLGPS ADRELLTFLE SSTGSPEEPN ENSBTAP00000053330/1-1045 PFLCCRPASP S---YRPPTT RRSRLSLDTM ADRELLSFLE RSTDGPEEL- bmy_18175T0/1-842 PFLHSRPISL S---YRPPNT RRSRLSLGIT ADRELLTFLE SSTDSPEEL- BACU013578/1-1150 PFLHSRPISL S---YRPPNT RRSRLSLGIT ADRELLTFLE SSTGSPEEL- 601 650 ENSTTRP00000015215/1-1132 KFHSLPRSCP WQAPASGART EPGGQRDQGS SPAHRPPVSE GQEETPHPTS ENSP00000427567/1-1143 KFHSLPRSSP RQARPTIACL EPAEVRHQDS SFAHKPQASG GQEEAPNPPS ENSBTAP00000053330/1-1045 KPSNSSQGCL WQVPPDGACR EPGEPRGQDS SLAHRPRALE GQEEAPHSTT bmy_18175T0/1-842 KFHSLPRSRP RQAPASGART EPGEQRDQGS SPVHRPPASE GQEEGPHPTS BACU013578/1-1150 KFHSLPRSCP RQAPASRARM EPGEQRDQGS SPADRPPASE GQEEAPHPTS 651 700 ENSTTRP00000015215/1-1132 AWPGQLPAPR PEEPAPALPR VRRNGVSILR KRNSEPVGLG SVR-SPPLSP ENSP00000427567/1-1143 AQAHQLAAAQ PENHASAFPR ARRQGVSVLR KRYSEPVSLG SAQ-SPPLSP ENSBTAP00000053330/1-1045 AWANWLPAAH PDDPACALRR PRRSGVSTLR KRNSAPVGLD PVRSSPPLSP bmy_18175T0/1-842 AWPSQLPAPG PEEPASALPR VRGNGVSILR KRNSEPVGLG PVR-SPPLSL BACU013578/1-1150 AWPSQLLAPG PEEPASALPR VRGNGVSILR KRNSEPVGLG PVR-SPPLSL 701 750 ENSTTRP00000015215/1-1132 LALGIREHEL VTGLAQFDLQ AAKGPEELAP LTVNDFSPME LASVENENPQ ENSP00000427567/1-1143 LALGIKEHEL VTGLAQFNLQ GSQGMEETSQ LTLSDFSPME LESVGHRGPQ ENSBTAP00000053330/1-1045 LALGIREHEL VTGLAQFDLQ APKGPEEPPQ LTGNDCSPME LVSVGDASPP bmy_18175T0/1-842 LALGIREHEL VTGLAQFDLQ AAKGPEELAP LTVNDFSPME LASVGDKSPQ BACU013578/1-1150 LALGIREHEL VTGLAQFDLQ AAKGPEELAP LTVNDFSPME LASVGDESPQ 751 800 ENSTTRP00000015215/1-1132 SLGASNGSP- TPVGRGAQGG PSPAPGDGSA APDEPISAAP VSEGSSNPEN ENSP00000427567/1-1143 SLSASSSSL- TPMGRDALGS LSPALEDGKA APDEPGSAAL GSVGSSDPEN ENSBTAP00000053330/1-1045 SLGAPNSSPT TPVGRGARVG PSPVPQDGEA APYEPRSAAP LSEGSSDPDS bmy_18175T0/1-842 SLGASNGSP- TPMGRGAQGG PIPAPGDGSA APDEPISAAP VSEGSSDPEN BACU013578/1-1150 SLGASNGSP- TPVGRGAQGG PILAPGDGSA APDEPISAAP VSEGSSDPEN 801 850 ENSTTRP00000015215/1-1132 QD-GSLFYIS DTTDCSLILD CS-GTDSRPE GGDPGXXXXX XXXXXXXXXX ENSP00000427567/1-1143 KDPRPLFCIS DTTDCSLTLD CSEGTDSRPR GGDPEEGGEG DGSMSSGVGE ENSBTAP00000053330/1-1045 QDPGPLFCIS DTSDCSLTLD CSEGANSRPL EGDPGEAGDG EGSVSPGAWE bmy_18175T0/1-842 QDPGHLFYVL DTTDCSLTLD CSEGTDSRPD GADPGEGGDG EGSVSSRGGE BACU013578/1-1150 QDPGPLFYVS DTTDCSLTLD CSEGTDSRPE GADPGEGGEG EGSVSSRAGE 851 900 ENSTTRP00000015215/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427567/1-1143 MGDSQVSSNP TSSPPGEAPA PVSVDSE--- ------PSCK GGLPRDKPTK ENSBTAP00000053330/1-1045 TGGSQASSNP ICSPTVGAPA AASTPGSGSV SGKSELESCK GGPPRDRPAR bmy_18175T0/1-842 TGGSQ----- ---------- ---------- ---------K EGL------- BACU013578/1-1150 TGGSQVSSNP ARNPPAEAPI AASASGGSVS GKSE--PGCE GGLPTDRTAR 901 950 ENSTTRP00000015215/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427567/1-1143 RKDVVAPKRG SLKEAS--PG ASKPGSARRS QGAVAKSVRT LTASENESMR ENSBTAP00000053330/1-1045 AREATALRRS SPREAPPLAG PSRAGPARPT ---------- ---------- bmy_18175T0/1-842 ---------- ---------- ---------- ---------- ---------- BACU013578/1-1150 GREVMAPKRS PLKQAS--AG ASRAGPARRG AGA-AGPVRA LTGWESESMR 951 1000 ENSTTRP00000015215/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427567/1-1143 KVMPITKSSR GAGWRRPELS SRGPSQNPPS STDTVWSRQN SVRRASTGAE ENSBTAP00000053330/1-1045 -TAPA----- ---------- ---------- ---------- ---------- bmy_18175T0/1-842 -LVHL----- ---------- ---------- ---------- ---------- BACU013578/1-1150 KVVPI----- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000015215/1-1132 XX-------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000427567/1-1143 EQRLPRGSSG SSSTRPGRDV PLQPRGSFKK PSAKPLRNLP RQKPEENKTC ENSBTAP00000053330/1-1045 ---------- ---ARPGREP PSPLRSSFRK PSAKPVRNVP RPKPEEDKAC bmy_18175T0/1-842 ---------- ---AR----- ---------- --CDAEMGVG AQVWSRQLAT BACU013578/1-1150 ---------- ---SRAGRAP PAG-----KR PPCEAXXXXX XXXXXXXXXX 1051 1100 ENSTTRP00000015215/1-1132 XXXXXXXXXX X--------- ---------- ---------- ---------- ENSP00000427567/1-1143 RAHSEGPESP K--------- ---------- ---------- ---------- ENSBTAP00000053330/1-1045 RSGAQGPDGP G--------- ---------- ---------- ---------- bmy_18175T0/1-842 LCIDEGHFSP F--------- ---------- ---------- ---------- BACU013578/1-1150 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1101 1150 ENSTTRP00000015215/1-1132 ---------- ---------- ---------- ---------- ---------- ENSP00000427567/1-1143 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053330/1-1045 ---------- ---------- ---------- ---------- ---------- bmy_18175T0/1-842 ---------- ---------- ---------- ---------- ---------- BACU013578/1-1150 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1151 1200 ENSTTRP00000015215/1-1132 ---------- ---------- ---------- ---------- ---------- ENSP00000427567/1-1143 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053330/1-1045 ---------- ---------- ---------- ---------- ---------- bmy_18175T0/1-842 ---------- ---------- ---------- ---------- ---------- BACU013578/1-1150 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 1201 1250 ENSTTRP00000015215/1-1132 ---------- XXXXXPPAPS APRGPAPVPS FARNTVASSS RCQRTDSPPV ENSP00000427567/1-1143 ---------- EEPKTPSVPS VPHELPRVPS FARNTVASSS RSMRTDLPPV ENSBTAP00000053330/1-1045 ---------- EPPRAALAAS VPRGPASVPS FARNTVASSS RSQRLDSPAP bmy_18175T0/1-842 ---------- ---------- ---------- ---------- ------HPCS BACU013578/1-1150 XXXXXXXXXX XXXXXPEGAR VGRGP----- ---------- ---RRQRPGP 1251 1300 ENSTTRP00000015215/1-1132 ARSPGLTRTV SQRQLKVKGG PEDAAPKDSG ALRRAGSVRA PRKGPESAEG ENSP00000427567/1-1143 AKAPGITRTV SQRQLRVKGD PEDAAPKDSS TLRRASSARA PKKRPESAEG ENSBTAP00000053330/1-1045 ARAPGLTRTM SQRQLRVKGG PEGAAPKDSG ALRRAGSART LRKGSESAEG bmy_18175T0/1-842 SGNP------ -------DGG GKHILEDE-- ---------- ---------- BACU013578/1-1150 AEGP------ -------RGG GKGLLPAEGC LSGGAGEGAP SLVEVRGVRA 1301 1350 ENSTTRP00000015215/1-1132 PGDSAQAPPK GRGAGERASF RLKDACRGAL GKGLHPLWK ENSP00000427567/1-1143 PSANTEAPLK ARGAGERASL RRKDSSRTTL GRILNPLRK ENSBTAP00000053330/1-1045 PGAGAKTPPK G--------- RLKEANHTAL GRGLHPLRK bmy_18175T0/1-842 ---------- ---FGDVRRN KMRAF----- --------- BACU013578/1-1150 PLSPPGVRVV RTDFCERPTP NVYST----- ---------