KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:03:57 2014 Check: 00 .. Name: BACU000787/1-403 Len: 712 Check: 0 Weight: 1.00 Name: bmy_05076T0/1-582 Len: 712 Check: 331 Weight: 1.00 Name: ENSTTRP00000009421/1-588 Len: 712 Check: 1520 Weight: 1.00 Name: ENSP00000322898/1-591 Len: 712 Check: 6115 Weight: 1.00 Name: ENSBTAP00000053340/1-591 Len: 712 Check: 6771 Weight: 1.00 // 1 50 BACU000787/1-403 MGLESFLGRG EPEPVIARRE ELLQVEKGVG IPLLYKGAAA KVCLEESLGS bmy_05076T0/1-582 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009421/1-588 ---------- ---------- ---------- ---------- ---------- ENSP00000322898/1-591 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053340/1-591 ---------- ---------- ---------- ---------- ---------- 51 100 BACU000787/1-403 GEVERSRGGD FPQEKVVFMF GIQERIQRSG SSMKEEPLGS GRNAVRTWMQ bmy_05076T0/1-582 ---------- ---------- ---------- ---------- -MDSVRSWVR ENSTTRP00000009421/1-588 ---------- ---------M GIQESIQRSG SSMKEEPLGS GMNAVRTWMQ ENSP00000322898/1-591 ---------- --------MF GIQESIQRSG SSMKEEPLGS GMNAVRTWMQ ENSBTAP00000053340/1-591 ---------- --------MF GIQESIQRSG SSMKEEPLGS GMNAVRTWMQ 101 150 BACU000787/1-403 GAGVLDANTA TQSGVGLARA HFEKQPPSNL RKSNFFHFVL ALYDRQGQPV bmy_05076T0/1-582 NVGVVDANVA AQSGVALSRA HFEKQPPSNL RKSNFFHFVL ALYDRQGQPV ENSTTRP00000009421/1-588 GAGVLDANTA AQSGVGLARA HFEKQPPSNL RKSNFFHFVL ALYDRQGQPV ENSP00000322898/1-591 GAGVLDANTA AQSGVGLARA HFEKQPPSNL RKSNFFHFVL ALYDRQGQPV ENSBTAP00000053340/1-591 GAGVLDANTA AQSGVGLARA HFEKQPPSNL RKSNFFHFVL ALYDRQGQPV 151 200 BACU000787/1-403 EIERTAFVGF VEKEKEANSE KTNNGIHYRL QLLYSNGIRT EQDFYVRLID bmy_05076T0/1-582 EIERTAFVDF VENDKEQGNE KTNNGTHYKL QLLYSNGVRT EQDLYVRLID ENSTTRP00000009421/1-588 EIERTAFVGF VEKEKEANSE KTNNGIHYRL QLLYSNGIRT EQDFYVRLID ENSP00000322898/1-591 EIERTAFVGF VEKEKEANSE KTNNGIHYRL QLLYSNGIRT EQDFYVRLID ENSBTAP00000053340/1-591 EIERTAFVGF VEKEKEANSE KTNNGIHYRL QLLYSNGIRT EQDFYVRLID 201 250 BACU000787/1-403 SMTKQAIVYE GQDKNPEMCR VLLTHEIMCS RCCDKKSCGN RNETPSDPVI bmy_05076T0/1-582 SVTKQPIAYE GQNKNPEMCR VLLTHEVMCS RCCEKKSCGN RNETPSDPVI ENSTTRP00000009421/1-588 SMTKQAIVYE GQDKNPEMCK VLFTEHLMIP RCLFKEIC-- VRNANRDNLF ENSP00000322898/1-591 SMTKQAIVYE GQDKNPEMCR VLLTHEIMCS RCCDKKSCGN RNETPSDPVI ENSBTAP00000053340/1-591 SMTKQAIVYE GQDKNPEMCR VLLTHEIMCS RCCDKKSCGN RNETPSDPVI 251 300 BACU000787/1-403 ID-------- ---------- ---------- ---------- ---------- bmy_05076T0/1-582 IDSYRGLRRE LAASVFVGGS NPVDRRIKIY KGDDLCVCPE RWVELRFQKQ ENSTTRP00000009421/1-588 LH-------- ---------- ---------- ---------- ---------- ENSP00000322898/1-591 ID-------- ---------- ---------- ---------- ---------- ENSBTAP00000053340/1-591 ID-------- ---------- ---------- ---------- ---------- 301 350 BACU000787/1-403 ---RFWKNSA IFISQKTF-S SGYSGKL--- ---------- --FIGLIEEA bmy_05076T0/1-582 KTKRFFLKFF LKCNQNCLKT AGNPRDMRRF QVVLSTTVNV DGHVLAVSDN ENSTTRP00000009421/1-588 ---RFFLKFF LKCNQNCLKN AGNPRDMRRF QVVVSTTVNV DGHVLAVSDN ENSP00000322898/1-591 ---RFFLKFF LKCNQNCLKN AGNPRDMRRF QVVVSTTVNV DGHVLAVSDN ENSBTAP00000053340/1-591 ---RFFLKFF LKCNQNCLKN AGNPRDMRRF QVVVSTTVNV DGHVLAVSDN 351 400 BACU000787/1-403 FWSYGNGTGE KNYNKVNEDK ------PRVL RC-------- -WGLGTSA-- bmy_05076T0/1-582 MFVHNNSKHG RRARRLDPSE --------AT PCIKAISPSE GWTTGGAMVI ENSTTRP00000009421/1-588 MFVHNNSKHG RRARRLDPSE GTPSYLEHAT PCIKAISPSE GWTTGGATVI ENSP00000322898/1-591 MFVHNNSKHG RRARRLDPSE GTPSYLEHAT PCIKAISPSE GWTTGGATVI ENSBTAP00000053340/1-591 MFVHNNSKHG RRARRLDPSE GTPSYLEHAT PCIKAISPSE GWTTGGATVI 401 450 BACU000787/1-403 ---------- ---------- ---------- ---------- ---------N bmy_05076T0/1-582 IIGDNFFDGL QVVFGTMLVW SELITPHAIR VQTPPRHIPG VVEVTLSYKS ENSTTRP00000009421/1-588 IIGDNFFDGL QVIFGTMLVW SELITPHAIR VQTPPRHIPG VVEVTLSYKS ENSP00000322898/1-591 IIGDNFFDGL QVIFGTMLVW SELITPHAIR VQTPPRHIPG VVEVTLSYKS ENSBTAP00000053340/1-591 IIGDNFFDGL QVIFGTMLVW SELITPHAIR VQTPPRHIPG VVEVTLSYKS 451 500 BACU000787/1-403 RRWARGRPGR GSAPSLLPPT ---------- ---------- ---------- bmy_05076T0/1-582 KQFCKGAPGR FIYTALNEPT IDYGFQRLQK VIPRHPGDPE RLAKEMLLKR ENSTTRP00000009421/1-588 KQFCKGTPGR FIXXXLNEPT IDYGFQRLQK VIPRHPGDPE RLPKEVILKR ENSP00000322898/1-591 KQFCKGTPGR FIYTALNEPT IDYGFQRLQK VIPRHPGDPE RLPKEVILKR ENSBTAP00000053340/1-591 KQFCKGTPGR FIYTALNEPT IDYGFQRLQK VIPRHPGDPE RLPKEVILKR 501 550 BACU000787/1-403 -----RALSG GIVGTHELLL TVGA------ ---------- PCYKSSPV-- bmy_05076T0/1-582 AADLVEALYG TPHNNQDIIL KRAADIAEAL YSVPRNPSQI PALSSSPAHS ENSTTRP00000009421/1-588 AADLVEALYG MPHNNQEIIL KRAADIAEAL YSVPRNHSQL PALTNTSVHA ENSP00000322898/1-591 AADLVEALYG MPHNNQEIIL KRAADIAEAL YSVPRNHNQL PALANTSVHA ENSBTAP00000053340/1-591 AADLVEALYG MPHNNQEIIL KRAADIAEAL YSVPRNHSQL PALTNTSVHA 551 600 BACU000787/1-403 ---------- ---------- ---------- ---------- ---------- bmy_05076T0/1-582 GMMGINSYGS QLGVSISEST QGNNQGYIRN TSSISPRGYS SSSTPQQSNY ENSTTRP00000009421/1-588 GMMGVNSFSG QLAVNVSEAS QATNQGFTRN SSSVSPHGYV PSTTPQQTNY ENSP00000322898/1-591 GMMGVNSFSG QLAVNVSEAS QATNQGFTRN SSSVSPHGYV PSTTPQQTNY ENSBTAP00000053340/1-591 GMMGVNSFSG QLAVNVSEAS QATNQGFTRN SSSVSPHGYV PSTTPQQTNY 601 650 BACU000787/1-403 ---------- ---------- ---PRALWAA EHRAEAAVF- ---------- bmy_05076T0/1-582 STSSNSMNGY SNVPMANLGV PGSPGFLNGS PTGSPYGIFP ---------- ENSTTRP00000009421/1-588 NSVTTSMNGY GTAAMSNLG- -GSPTFLNGS AANSPYAIVP SSPTMASSTS ENSP00000322898/1-591 NSVTTSMNGY GSAAMSNLG- -GSPTFLNGS AANSPYAIVP SSPTMASSTS ENSBTAP00000053340/1-591 NSVTTSMNGY GTAAMSNLG- -GSPTFLNGS AANSPYAIVP SSPTMASSTS 651 700 BACU000787/1-403 ---------- ---------V LLLATRSEF- --LRNGKAPA PVCRQ----- bmy_05076T0/1-582 ---------- ---------- -AVKQKSAFA PVIRPQGSPS PACSSGNGNG ENSTTRP00000009421/1-588 LPSNCSSSSG IFSFSPANMV SAVKQKSAFA PVVRPQTSPP PTCTSTNGNS ENSP00000322898/1-591 LPSNCSSSSG IFSFSPANMV SAVKQKSAFA PVVRPQTSPP PTCTSTNGNS ENSBTAP00000053340/1-591 LPSNCSSSSG IFSFSPANMV SAVKQKSAFA PVVRPQTSPP PTCTSTNGNS 701 750 BACU000787/1-403 ---------- -- bmy_05076T0/1-582 FRAMTGLVVP PM ENSTTRP00000009421/1-588 LQAISGMIVP PM ENSP00000322898/1-591 LQAISGMIVP PM ENSBTAP00000053340/1-591 LQAISGMIVP PM