KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:01 2014 Check: 00 .. Name: ENSP00000288235/1-1108 Len: 1109 Check: 5067 Weight: 1.00 Name: bmy_18946T0/1-877 Len: 1109 Check: 5850 Weight: 1.00 Name: ENSBTAP00000053355/1-1108 Len: 1109 Check: 266 Weight: 1.00 Name: BACU001019/1-1108 Len: 1109 Check: 3157 Weight: 1.00 Name: ENSTTRP00000004972/1-1107 Len: 1109 Check: 2239 Weight: 1.00 // 1 50 ENSP00000288235/1-1108 MGSKGVYQYH WQSHNVKHSG VDDMVLLSKI TENSIVENLK KRYMDDYIFT bmy_18946T0/1-877 ---------- ---------- ---------- ---------E RELLXSH--- ENSBTAP00000053355/1-1108 MGSKGAYRYH WQSHNVKHSG VDDMVLLSKI TENAIVENLK KRYMDDYIFT BACU001019/1-1108 MGSKGAYRYH WQSHNVKHSG VDDMVLLSKI TENAIVENLK KRYMDDYIFT ENSTTRP00000004972/1-1107 -GSKGAYRYH WQSHNVKHSG VDDMVLLSKI TENAIVENLK KRYMDDYIFT 51 100 ENSP00000288235/1-1108 YIGSVLISVN PFKQMPYFGE KEIEMYQGAA QYENPPHIYA LADNMYRNMI bmy_18946T0/1-877 FIGG------ ------YF-- ---------- ---------- ---------- ENSBTAP00000053355/1-1108 YIGSVLISVN PFKQMPYFGE KEIEMYQGAA QYENPPHIYA LADNMYRNMI BACU001019/1-1108 YIGSVLISVN PFKQMPYFGE KEIEMYQGAA QYENPPHIYA LADNMYRNMI ENSTTRP00000004972/1-1107 YIGSVLISVN PFKQMPYFGE KEIEMYQGAA QYENPPHIYA LADNMYRNMI 101 150 ENSP00000288235/1-1108 IDRENQCV-I ISGESGAGKT VAAKYIMSYI SRVSGGGTKV QHVKDIILQS bmy_18946T0/1-877 ------CLSF LSGESGAGKT VAAKYIMSYI SRVSGGGPKV QHVKDIILQS ENSBTAP00000053355/1-1108 IDRENQCV-I ISGESGAGKT VAAKYIMSYI SRVSGGGPKV QHVKDIILQS BACU001019/1-1108 IDRENQCV-I ISGESGAGKT VAAKYIMSYI SRVSGGGPKV QHVKDIILQS ENSTTRP00000004972/1-1107 IDRENQCV-I ISGESGAGKT VAAKYIMSYI SRVSGGGPKV QHVKDIILQS 151 200 ENSP00000288235/1-1108 NPLLEAFGNA KTVRNNNSSR FGKYFEIQFS PGGEPDGGKI SNFLLEKSRV bmy_18946T0/1-877 NPLLEAFGNA KTVRNNNSSR FGKYFEIQFS PGGEPDGGKI SNFLLEKSRV ENSBTAP00000053355/1-1108 NPLLEAFGNA KTVRNNNSSR FGKYFEIQFS PGGEPDGGKI SNFLLEKSRV BACU001019/1-1108 NPLLEAFGNA KTVRNNNSSR FGKYFEIQFS PGGEPDGGKI SNFLLEKSRV ENSTTRP00000004972/1-1107 NPLLEAFGNA KTVRNNNSSR FGKYFEIQFS PGGEPDGGKI SNFLLEKSRV 201 250 ENSP00000288235/1-1108 VMRNPGERSF HIFYQLIEGA SAEQKHSLGI TSMDYYYYLS LSGSYKVDDI bmy_18946T0/1-877 VMRNPGERNF HIFYQLIEGA SAEQKHSLGI TTMDYYYYLS LSGSFTVDGI ENSBTAP00000053355/1-1108 VMRNPGERSF HIFYQLIEGA SPEQKHGLGI TTMDYYYYLS LSGSYTVDGI BACU001019/1-1108 VMRNPGERNF HIFYQLIEGA SAEQKHSLGI TTMDYYYYLS LSGSFTVDGI ENSTTRP00000004972/1-1107 VMRNPGERNF HIFYQLIEGA SAEQKHGLGI TTMDYYYYLS LSGSFTVDGI 251 300 ENSP00000288235/1-1108 DDRREFQETL HAMNVIGIFA EEQTLVLQIV AGILHLGNIS FKEVGNYAAV bmy_18946T0/1-877 DDRKEFQETL HAMNVIGIFA EEQTLVLQIV AGTLHLGNIS FKEVGNYAAV ENSBTAP00000053355/1-1108 DDKKDFQETL HAMNVIGIFA EEQALVLQIV AGILHLGNIS FKEVGNYAAV BACU001019/1-1108 DDRKEFQETL HAMNVIGIFA EEQTLVLQIV AGTLHLGNIS FKEVGNYAAV ENSTTRP00000004972/1-1107 DDRKEFQETL HAMNVIGIFA EEQTLVLQIV AGILHLGNIS FKEVGNYAAV 301 350 ENSP00000288235/1-1108 ESEEFLAFPA YLLGINQDRL KEKLTSRQMD SKWGGKSESI HVTLNVEQAC bmy_18946T0/1-877 ESEEFLAFPA YLLGINQDRL KEKLTSRQMD SKWGGKSESI HVTLNVEQAC ENSBTAP00000053355/1-1108 ESEEFLAFPA YLLGINQDRL KEKLTSRQMD SKWGGKSESI NVTLNVEQAC BACU001019/1-1108 ESEEFLAFPA YLLGINQDRL KEKLTSRQMD SKWGGKSESI HVTLNVEQAC ENSTTRP00000004972/1-1107 ESEEFLAFPA YLLGINQDRL KEKLTSRQMD SKWGGKSESI HVTLNVEQAC 351 400 ENSP00000288235/1-1108 YTRDALAKAL HARVFDFLVD SINKAMEKDH EEYNIGVLDI YGFEIFQKNG bmy_18946T0/1-877 YTRDALAKAL HSRVFDFLVD SINKAMEKDH EEYNIGVLDI YGFEIFQKNG ENSBTAP00000053355/1-1108 YTRDALAKAL HSRVFDFLVD SINKAMEKDH QEYNIGVLDI YGFEIFQKNG BACU001019/1-1108 YTRDALAKAL HSRVFDFLVD SINKAMEKDH EEYNIGVLDI YGFEIFQKNG ENSTTRP00000004972/1-1107 YTRDALAKAL HSRVFDFLVD SINKAMEKDH EEYNIGVLDI YGFEIFQKNG 401 450 ENSP00000288235/1-1108 FEQFCINFVN EKLQQIFIEL TLKAEQEEYV QEGIRWTPIE YFNNKIVCDL bmy_18946T0/1-877 FEQFCINFVN EKLQQIFIEL TLKAEQEEYV QEGIRWTPID YFNNKVVCDL ENSBTAP00000053355/1-1108 FEQFCINFVN EKLQQIFIEL TLKAEQEEYV QEGIRWTPID YFNNKVVCDL BACU001019/1-1108 FEQFCINFVN EKLQQIFIEL TLKAEQEEYV QEGIRWTPID YFNNKVVCDL ENSTTRP00000004972/1-1107 FEQFCINFVN EKLQQIFIEL TLKAEQEEYV QEGIRWTPID YFNNKIVCDL 451 500 ENSP00000288235/1-1108 IENKVNPPGI MSILDDVCAT MHAVGEGADQ TLLQKLQMQI GSHEHFNSWN bmy_18946T0/1-877 IENKVNPPGI MSILDDVCAT MHAVGEGADQ TLLQKLQMQI GNHEHFNSWN ENSBTAP00000053355/1-1108 IENKVNPPGI MSILDDVCAT MHAVGEGADQ TLLQKLQMQI GNHEHFNSWN BACU001019/1-1108 IENKVNPPGI MSILDDVCAT MHAVGEGADQ TLLQKLQMQI GNHEHFNSWN ENSTTRP00000004972/1-1107 IENKVNPPGI MSILDDVCAT MHAVGEGADQ TLLQKLQMQI GNHEHFNSWN 501 550 ENSP00000288235/1-1108 QGFIIHHYAG KVSYDMDGFC ERNRDVLFMD LIELMQSSEL PFIKSLFPEN bmy_18946T0/1-877 QGFIIHHYAG KVSYDMDGFC ERNRDVLFMD LIELMQSSEL PFIKSLFPEN ENSBTAP00000053355/1-1108 QGFIIHHYAG KVSYDMDGFC ERNRDVLFMD LIELMQSSEQ PFIKSLFPEN BACU001019/1-1108 QGFIIHHYAG KVSYDMDGFC ERNRDVLFMD LIELMQSSEL PFIKSLFPEN ENSTTRP00000004972/1-1107 QGFIIHHYAG KVSYDMDGFC ERNRDVLFMD LIELMQSSEL PFIKSLFPEN 551 600 ENSP00000288235/1-1108 LQADKKGRPT TAGSKIKKQA NDLVSTLMKC TPHYIRCIKP NETKKPRDWE bmy_18946T0/1-877 LQADKKGRPT TAGSKIKKQA NDLVSTLMKC TPHYIRCIKP NETKKPKDWE ENSBTAP00000053355/1-1108 LQADKKGRPT TAGSKIKKQA NDLVSTLMKC TPHYIRCIKP NETKKPKDWE BACU001019/1-1108 LQADKKGRPT TAGSKIKKQA NDLVSTLMKC TPHYIRCIKP NETKKPKDWE ENSTTRP00000004972/1-1107 LQADKKGRPT TAGSKIKKQA NDLVSTLMKC TPHYIRCIKP NETKKPKDWE 601 650 ENSP00000288235/1-1108 ESRVKHQVEY LGLKENIRVR RAGYAYRRIF QKFLQRYAIL TKATWPSWQG bmy_18946T0/1-877 ESR------- ---------- ---------- ---------- ---------- ENSBTAP00000053355/1-1108 ESRVKHQVEY LGLKENIRVR RAGYAYRRVF QKFLQRYAIL TKATWPSWKG BACU001019/1-1108 ESRVKHQVEY LGLKENIRVR RAGYAYRRVF QKFLQRYAIL TKATWPSWRG ENSTTRP00000004972/1-1107 ESRVKHQVEY LGLKENIRVR RAGYAYRRVF QKFLQRYAIL TKATWPSWRG 651 700 ENSP00000288235/1-1108 EEKQGVLHLL QSVNMDSDQF QLGRSKVFIK APESLFLLEE MRERKYDGYA bmy_18946T0/1-877 -EQPVVL--- -------EPF MFVLTAVFL- ALCKLFLLEE MRERKYDGYA ENSBTAP00000053355/1-1108 DEKQGVLHLL QSVNMDSDQF QLGKSKVFIK APESLFLLEE MRERKYDGYA BACU001019/1-1108 DEKQGVLHLL QSVNMDGDQF QLGKSKVFVK APESLFLLEE MRERKYDGYA ENSTTRP00000004972/1-1107 DEKQGVLHLL QSVNMDSDQF QLGKSKVFVK APESLFLLEE MRERKYDGYA 701 750 ENSP00000288235/1-1108 RVIQKSWRKF VARKKYVQMR EEASDLLLNK KERRRNSINR NFIGDYIGME bmy_18946T0/1-877 RVIQKSWRKF VARKKYVQMR EEASDLLLNK KERRRNSINR NFIGDYIGME ENSBTAP00000053355/1-1108 RVIQKSWRKF VARKKYVQMR EEASNLLLNK KERRRNSINR NFIGDYIGME BACU001019/1-1108 RVIQKSWRKF VARKKYVQMR EEASDLLLNK KERRRNSINR NFIGDYIGME ENSTTRP00000004972/1-1107 RVIQKSWRKF VARKKYVQMR EEASDLLLNK KERRRNSINR NFIGDYIGME 751 800 ENSP00000288235/1-1108 EHPELQQFVG KREKIDFADT VTKYDRRFKG VKRDLLLTPK CLYLIGREKV bmy_18946T0/1-877 EHPELQQFVG KREKIDFADT VTKYDRRFKS VKRDLLLTPK CLYLIGREKV ENSBTAP00000053355/1-1108 EHPELQQFVG KREKIDFADT VTKYDRRFKS VKRDLLLTPK CLYLIGREKV BACU001019/1-1108 EHPELQQFVG KREKIDFADT VTKYDRRFKS VKRDLLLTPK CLYLIGREKV ENSTTRP00000004972/1-1107 EHPELQQFVG KREKIDFADT VTKYDRRFKS VKRDLLLTPK CLYLIGREKV 801 850 ENSP00000288235/1-1108 KQGPDKGLVK EVLKRKIEIE RILSVSLSTM QDDIFILHEQ EYDSLLESVF bmy_18946T0/1-877 KQGPDKGLVK EVLKRRIEME RILSVSLSTM QDDLFILHEQ EYDSLLESVF ENSBTAP00000053355/1-1108 KQGPDKGLVK EVLKRRIEME RILSVSLSTM QDDLFILHEQ EYDSLLESVF BACU001019/1-1108 KQGPDKGLVK EVLKRRIETE RILSVSLSTL QDDLFILHEQ EYDSLLESVF ENSTTRP00000004972/1-1107 KQGPDKGLVK EVLKRRIEME RILSVSLSTM QDDLFILHEQ EYDSLLESVF 851 900 ENSP00000288235/1-1108 KTEFLSLLAK RYEEKTQKQL PLKFSNTLEL KLKKENWGPW SAGGSRQVQF bmy_18946T0/1-877 KTEFLSLLAK RYEEKTQKQL PLKFSNTLEL KLKKENWGPW SAGGSRQVQF ENSBTAP00000053355/1-1108 KTEFLSLLAK RYEEKTQKQL PLKFSNTLEI KLKKENWGPW SAGGSRQVQF BACU001019/1-1108 KTEFLSLLAK RYEEKTQKQL PLKFSNTLEL KLKKENWGPW SAGGSRQVQF ENSTTRP00000004972/1-1107 KTEFLSLLAK RYEEKTQKQL PLKFSNTLEI KLKKENWGPW SAGGSRQVQF 901 950 ENSP00000288235/1-1108 HQGFGDLAVL KPSNKVLQVS IGPGLPKNSR PTRRNTTQNT GYSSGTQNAN bmy_18946T0/1-877 HQGFGDLAIL KPSNKVLQVS IGPGLPKNSR PTRRNTIQSR GYSSGTHNAN ENSBTAP00000053355/1-1108 HQGFGDLAIL KPSNKVLQVS IGPGLPRNSR PTRRNTIQSR DYSSRTHNAN BACU001019/1-1108 HQGFGDLAIL KPSNKVLQVS IGPGLPKNSR PTRRNTIQSR GYSSGTHNAN ENSTTRP00000004972/1-1107 HQGFGDLAIL KPSNKVLQVS IGPGLPRNSR PTRRNTVQSR GYSSGTHNAN 951 1000 ENSP00000288235/1-1108 YPVRAAPPPP GYHQNGVIRN QYVPYPHAPG SQRSNQKSLY TSMARPPLPR bmy_18946T0/1-877 YPMRAAPPPP GYHQNGVIKN QFVPHPHAAG NQRSTQKSLC PSMARPPLPR ENSBTAP00000053355/1-1108 YPMRAAPLPP GLHQNGVIKN QFVPYPYAAG NQRSNQKSLY TSMARPPLPQ BACU001019/1-1108 YPMRAAPPPP GYHQNGVIKN QFVPHPHAAG NQRSTQKSLC PSMVRPPLPR ENSTTRP00000004972/1-1107 YPMRAAPPPP GYHQNGVVKN QFVLHPHAAG NQRSTQRSLC PSMARPPLPR 1001 1050 ENSP00000288235/1-1108 QQSTSSDRVS QTPESLDFLK VPDQGAAGVR RQTTSRPPPA GGRPKPQPKP bmy_18946T0/1-877 QQSVGSDRVS QTPESLDFLK VPDQGAAG-- ---------- ---------- ENSBTAP00000053355/1-1108 QQSIGSDRAS QALESLDFLK VPDQGAAGAR RQTTSRPPPA GGRPKPQPKP BACU001019/1-1108 QQSVGSDRVS QTPESLDFLK VPDQGAAGVR RQTTSRPPPA GGRPKPQPKP ENSTTRP00000004972/1-1107 QQSVGSDRVS QTPESLDFLK VPDQGAAGVR RQTTSRPPPA GGRPKPQPKP 1051 1100 ENSP00000288235/1-1108 KPQVPQCKAL YAYDAQDTDE LSFNANDIID IIKEDPSGWW TGRLRGKQGL bmy_18946T0/1-877 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053355/1-1108 KPQVPQCKAL YAYDAQDTDE LSFNANDIID IIKEDPSGWW TGRLRGKQGL BACU001019/1-1108 KPQVPQCKAL YAYDAQDTDE LSFNANDIID IIKEDPSGWW TGRLRGKQGL ENSTTRP00000004972/1-1107 KPQVPQCKAL YAYDAQDTDE LSFNANDIID IIKEDPSGWW TGRLRGKQGL 1101 1150 ENSP00000288235/1-1108 FPNNYVTKI bmy_18946T0/1-877 --------- ENSBTAP00000053355/1-1108 FPNNYVTKI BACU001019/1-1108 FPNNYVTKI ENSTTRP00000004972/1-1107 FPNNYVTKI