KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:06 2014 Check: 00 .. Name: bmy_19675T0/1-353 Len: 463 Check: 9574 Weight: 1.00 Name: BACU014661/1-144 Len: 463 Check: 1897 Weight: 1.00 Name: ENSBTAP00000053359/1-437 Len: 463 Check: 722 Weight: 1.00 Name: ENSP00000373277/1-437 Len: 463 Check: 1410 Weight: 1.00 Name: ENSTTRP00000005872/1-435 Len: 463 Check: 5751 Weight: 1.00 // 1 50 bmy_19675T0/1-353 MEGKLQFHSR LTMMAQVLVP CWNQLHIRLF ERSQIEVLKY STLSSGLHTW BACU014661/1-144 MGKRLDQPQM Y--------P QYTYYYPHYL QTKQ----SY APAPHPM--- ENSBTAP00000053359/1-437 MGKRLDQPQM Y--------P QYTYYYPHYL QTKQ----SY APAPHPM--- ENSP00000373277/1-437 MGKRLDQPQM Y--------P QYTYYYPHYL QTKQ----SY APAPHPM--- ENSTTRP00000005872/1-435 MGKRLDQPQM Y--------P QYTYYYPHYL QTKQ----SY APAPHPM--- 51 100 bmy_19675T0/1-353 GMMLNQPRRR TAAIAPNNSG ENDKGIKRSA LANVNIRSLI CNVGAGGPAQ BACU014661/1-144 -----APPSP STNSSNNHSS SNSSG-EQLS KTNLYIRGL- ----PPGTTD ENSBTAP00000053359/1-437 -----APPSP STNSSSNHSS SNSSG-EQLS KTNLYIRGL- ----PPGTTD ENSP00000373277/1-437 -----APPSP STNSSSNNSS NNSSG-EQLS KTNLYIRGL- ----PPGTTD ENSTTRP00000005872/1-435 -----APPSP STNSSSNHSS SNSSG-EQLS KTNLYIRGL- ----PPGTTD 101 150 bmy_19675T0/1-353 QEVLPPSPLM PQLRIRKPLL QVKILD-RNF KASSFRNSTY RKEIVYLQNY BACU014661/1-144 QDLIKLCQPY GKIVSTKAIL DKNTNQCKGY GFVDFDSPAA AQKAVASLKA ENSBTAP00000053359/1-437 QDLIKLCQPY GKIVSTKAIL DKNTNQCKGY GFVDFDSPAA AQKAVASLKA ENSP00000373277/1-437 QDLIKLCQPY GKIVSTKAIL DKNTNQCKGY GFVDFDSPAA AQKAVASLKA ENSTTRP00000005872/1-435 QDLIKLCQPY GKIVSTKAIL DKNTNQCKGY GFVDFDSPAA AQKAVASLKA 151 200 bmy_19675T0/1-353 KEVDLEYQHS TN-------- SELVFCFDPH SGQFAFYGIE QELWLLLEKQ BACU014661/1-144 NGVQAQMAK- ---------- ---------- ---------- ---------- ENSBTAP00000053359/1-437 NGVQAQMAKQ QEQDPTNLYI SNLPISMDEQ ELENMLKPFG HVISTRILRD ENSP00000373277/1-437 NGVQAQMAKQ QEQDPTNLYI SNLPISMDEQ ELENMLKPFG HVISTRILRD ENSTTRP00000005872/1-435 NGVQAQMAKQ QEQDPTNLYI SNLPISMDEQ ELETMLKPFG HVISTRILRD 201 250 bmy_19675T0/1-353 SNGHSSKTLL IIFDFQEIS- -----FNDDY FGS------- ---------- BACU014661/1-144 ---------- ---------- -----YRQRH ---------- ---------- ENSBTAP00000053359/1-437 ANGVSRGVGF ARMESTEKCE VVIQHFNGKY LKTPPGIPAP SEPLLCKFAD ENSP00000373277/1-437 ANGVSRGVGF ARMESTEKCE VVIQHFNGKY LKTPPGIPAP SEPLLCKFAD ENSTTRP00000005872/1-435 ANGVSRGVGF ARMESTEKCE VVIQHFNGKY LKTPPGIPAP SEPLLCKFAD 251 300 bmy_19675T0/1-353 -GERTGLQKQ VYVEMTLP-- ---------- ---------- ---------- BACU014661/1-144 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053359/1-437 GGQKKRQNQS KYTQNGRPWP REGEAGMALT YDPTAAIQNG FYSSPYSIAT ENSP00000373277/1-437 GGQKKRQNQS KYTQNGRPWP REGEAGMALT YDPTAAIQNG FYSSPYSIAT ENSTTRP00000005872/1-435 GGQKKRQNQS KYTQNGRPWP REGEAGMALT YDPTAAIQNG FYSSPYSIAT 301 350 bmy_19675T0/1-353 GRGIPQ---- PFTAASAEQR IACQSYAPAP HP---MAPPS PSTNSSSNHS BACU014661/1-144 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053359/1-437 NRMIPQTSIT PFIAASPVST YQVQSTSWMP HPPYVMQPTG AVITPAMDHP ENSP00000373277/1-437 NRMIPQTSIT PFIAASPVST YQVQSTSWMP HPPYVMQPTG AVITPTMDHP ENSTTRP00000005872/1-435 NRMIPQTPIT PFIAASPVST YQVQSTSWMP HPPYVMQPTG AVITPTMDHP 351 400 bmy_19675T0/1-353 SSNSSGEQLS KTNLYIRGLP PGTT----DQ DLIKLCQPTL ---------- BACU014661/1-144 ---------- ---------- ---------- ----VVERSL ---------- ENSBTAP00000053359/1-437 MSMQPASMMG PLTQQMNHLS LGTTGTIQSQ DRIMILHQLL CQYMTAAAPM ENSP00000373277/1-437 MSMQPANMMG PLTQQMNHLS LGTTGTIQSQ DRIMILHQLL CQYMTAAAPM ENSTTRP00000005872/1-435 MSMQPANMMG PLTQQMNHLS LGTTGTIQSQ DRIMILHQLL CQYMTAAAPM 401 450 bmy_19675T0/1-353 ---------- ---------- ---ETINQTN SKRNNKVAQK RTQIA-DNTF BACU014661/1-144 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053359/1-437 QGTYIPQYTP VPPTAVSIEG VVADTSPQTV APSSQDTSGQ QQQIAVDTAS ENSP00000373277/1-437 QGTYIPQYTP VPPTAVSIEG VVADTSPQTV APSSQDTSGQ QQQIAVDTSN ENSTTRP00000005872/1-435 QGTYIPQYTP VPPTAVSIEG VVADTSPQTV APSSQDTSGQ QQQIAVDTSN 451 500 bmy_19675T0/1-353 LFILQIEKRK NND BACU014661/1-144 ---------- --- ENSBTAP00000053359/1-437 EHASAYSYQQ SKP ENSP00000373277/1-437 EHAPAYSYQQ SKP ENSTTRP00000005872/1-435 EHASAYSYQQ S--