KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:20 2014 Check: 00 .. Name: ENSTTRP00000015566/1-1513 Len: 1573 Check: 6434 Weight: 1.00 Name: ENSP00000392066/1-1571 Len: 1573 Check: 4357 Weight: 1.00 Name: bmy_18699T0/1-1120 Len: 1573 Check: 7690 Weight: 1.00 Name: ENSBTAP00000053376/1-1570 Len: 1573 Check: 7818 Weight: 1.00 Name: BACU004339/1-1185 Len: 1573 Check: 9304 Weight: 1.00 // 1 50 ENSTTRP00000015566/1-1513 ---------- ---------- ---------- -DITQKGYEK KRGKLLARYV ENSP00000392066/1-1571 MADRGCPLEA APLPAEVRES LAELELELSE GDITQKGYEK KRAKLLARYI bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 MAERGCPLEA VQLPAEVRES LAELELELSE GDITQKGYEK KRAKLLARCV BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015566/1-1513 PLAQGVDPSL QAETRIPGPS QATAPVPEQQ KTRPSHARDE RFRSDVHTEA ENSP00000392066/1-1571 PLIQGIDPSL QAENRIPGPS QTTAAAPKQQ KSRPTASRDE RFRSDVHTEA bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 PLIQGVDPSL QVENSILGPA QASAPAPKQP KPRPSNARDE RFRSDVHTEA BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000015566/1-1513 VQAALAKYKE RKMPMPSKRR SVLTHTAVEA YTPPDTSSAS EDEDSLQRPG ENSP00000392066/1-1571 VQAALAKYKE RKMPMPSKRR SVLVHSSVET YTPPDTSSAS EDEGSLRRPG bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 VQAALAKHKE RKMPMPSKRR SVLTHASVEA YTPPDTSSAS EDEGSLQRPG BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000015566/1-1513 RLASAPLQSH AGVAPWLDQA VQGSPASSAA SCTSSHPGGR PAAVPSAAAV ENSP00000392066/1-1571 RLTSTPLQSH SSVEPWLDRV IQGSSTSSSA SSTSSHPGGR PTTAPSAAAT bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 QLASAPLQSR PSIEPWPDPA IQGSSTSSSA SSTSSHPGGQ PAATPSAAAA BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000015566/1-1513 PAGPA--ALA RV-----ADL HSAPPDVTTG LAQHQPTYCE RPQLASMRGA ENSP00000392066/1-1571 PGAAATTALA GLEAHTHIDL HSAPPDVTTG LVEH--SYFE RPQVASVRSV bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 LAGPA--ALA RVVCVSKADL HSAPPDVTTG LVQHQHAYCE RPKLASVRGV BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015566/1-1513 PRGGSRSVLE TAGGVPVSSR VSSKIQQLLN TLKKPKRPPL KEFFVDDLEE ENSP00000392066/1-1571 PRGCSGSMLE TADGVPVNSR VSSKIQQLLN TLKRPKRPPL KEFFVDDFEE bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- MLFYFS---- ENSBTAP00000053376/1-1570 PRGCRGSVLE TAGGVPVNSR VSSKIQQLLN TLKRPKRPPL KEFFVDDFEE BACU004339/1-1185 ---------- ---------- ---------- ---------- MLFYFS---- 301 350 ENSTTRP00000015566/1-1513 VLEVQQPDPG QPKPEGGQTA VLKGELLAVG STWPPSLLAT LQQWGTTQPK ENSP00000392066/1-1571 LLEVQQPDPN QPKPEGSETS VLRGEPLTAG VPRPPSLLAT LQRWGTTQPK bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053376/1-1570 LLEVQQPDPN QPKPEGSQMA VLRGEPLA-E SSWPPSLLAA LQQWGTTQPK BACU004339/1-1185 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000015566/1-1513 APCLTALDTT GKAVYTLTYG KLWSRSLKLA YTLLNKLTSK NEPLLKPGDR ENSP00000392066/1-1571 SPCLTALDTT GKAVYTLTYG KLWSRSLKLA YTLLNKLTSK NEPLLKPGDR bmy_18699T0/1-1120 ---------- ---------- ---------- ---------- ----VKKNKS ENSBTAP00000053376/1-1570 APCLTALDTA GKAVYTLTYG KLWSRSLKLA YTLLNKLTNK NEPLLKPGDR BACU004339/1-1185 ---------- ---------- ---------- ---------- ----VKKNKS 401 450 ENSTTRP00000015566/1-1513 VALVFPNSDP VMFTVAFYGC LLAELVPVPI EVPLTRKDAG SQQVGFLLGS ENSP00000392066/1-1571 VALVFPNSDP VMFMVAFYGC LLAELVPVPI EVPLTRKDAG SQQVGFLLGS bmy_18699T0/1-1120 VALVFPNSDP VMFTVAFYGC LLAELVPVPI EVPLTRKDAG SQQVGFLLGS ENSBTAP00000053376/1-1570 VALVFPNSDP VMFMVAFYGC LLAELVPVPI EVPLTRKDAG SQQVGFLLGS BACU004339/1-1185 VALVFPNSDP VMFTVAFYGC LLAELVPVPI EVPLTRKDAG SQQVGFLLGS 451 500 ENSTTRP00000015566/1-1513 CGVALALTTD ACQKGLPKAQ TGEVAAFKGW PPLTWLVIDG KHLTKPPKDW ENSP00000392066/1-1571 CGVFLALTTD ACQKGLPKAQ TGEVAAFKGW PPLSWLVIDG KHLAKPPKDW bmy_18699T0/1-1120 CGVALALTTD ACQKGLPKAQ TGEVAAFKGW PPLTWLVIDG KHLTKPPKDW ENSBTAP00000053376/1-1570 CGVSLALTTD ACQKGLPKAQ TGEVVTFKGW PPLTWLVIDG KHLTKPPKDW BACU004339/1-1185 CGVALALTTD ACQKGLPKAQ TGEVAAFKGW PPLTWLVIDG KHLTKPPKDW 501 550 ENSTTRP00000015566/1-1513 HPSAQDAGAG TAYIEYKTSK EGSTVGVAVS HASLLAQCHA LTQACGYSEA ENSP00000392066/1-1571 HPLAQDTGTG TAYIEYKTSK EGSTVGVTVS HASLLAQCRA LTQACGYSEA bmy_18699T0/1-1120 HPSAQDAGAG TAYIEYKTSK EGSTVGVAVS HASLLAQCQA LTQACGYSEA ENSBTAP00000053376/1-1570 NPAVQDAGPG TAYIEYKTSK EGSTVGVAVS HASLLAQCQA LTQACGYSEA BACU004339/1-1185 HPSAQDAGAG TAYIEYKTSK EGSTVGVAVS HASLLAQCQA LTQACGYSEA 551 600 ENSTTRP00000015566/1-1513 ETLTNVLDFK RDAGLWHGVL TSVMNRMHVV SIPYALMKAN PLSWIQKVCA ENSP00000392066/1-1571 ETLTNVLDFK RDAGLWHGVL TSVMNRMHVV SVPYALMKAN PLSWIQKVCF bmy_18699T0/1-1120 ETLTNVLDFK RDAGLWHGVL TSVMNRMHVV SIPYALMKAN PLSWIQKVCA ENSBTAP00000053376/1-1570 ETLTNVLDFK RDAGLWHGVL TSILKRIHVV SIPYALMKAN PLSWIQKVCV BACU004339/1-1185 ETLTNVLDFK RDAGLWHGVL TSVMNRMHVV SIPYALMKAN PLSWIQKVCA 601 650 ENSTTRP00000015566/1-1513 YKARAALVKS RDMHWSLLAQ RGQRDVSLSS LRLLVVADGA NPXXXXXXXX ENSP00000392066/1-1571 YKARAALVKS RDMHWSLLAQ RGQRDVSLSS LRMLIVADGA NPWSISSCDA bmy_18699T0/1-1120 YKG------- ---------- ---------- ---------- ---SISSCDA ENSBTAP00000053376/1-1570 YKAQAALVKS RDMHWSLLAQ RGQRDVSLSS LRLLIVADGA NPWSISSCDA BACU004339/1-1185 YKARAALVKS RDMHWSLLAQ RGQRGVSLSS LRLLIVADGA NPWSISSCDA 651 700 ENSTTRP00000015566/1-1513 XXXXXXXXXX XXXXXXXXXX XXEAL-VAIR RPPDLGGPPP RRAVLSMSCL ENSP00000392066/1-1571 FLNVFQSRGL RPEVICPCAS SPEALTVAIR RPPDLGGPPP RKAVLSMNGL bmy_18699T0/1-1120 FLNVFQARGL RPEVICPCAS SPEALTVAIR RLAPRKRPPC SPAARGSGGC ENSBTAP00000053376/1-1570 FLNVFQARGL RPEVICPCAS SPEALTVAIR RPPDLGGPPP RRAVLSMSGL BACU004339/1-1185 FLNVFQARGL RPEVLCPCAS SPEALTVAIR RPPDLGGPPP RRAVLSMSGL 701 750 ENSTTRP00000015566/1-1513 SHGVIRLDAE EKLSVLTVQD VGQVMPGANV CVVKVEGTLY LCKTDEVGEI ENSP00000392066/1-1571 SYGVIRVDTE EKLSVLTVQD VGQVMPGANV CVVKLEGTPY LCKTDEVGEI bmy_18699T0/1-1120 PR-------- ---TAWWKRP CGPPGPPAEE CV---GGG-- -CRADLWGH- ENSBTAP00000053376/1-1570 SHGVIRVDAE EKLSVLTVQD VGQVMPGANV CVVKVEGTPH LCKTDEVGEI BACU004339/1-1185 SHGVIRLDAE EKLSVLAVQD VGQAMPGANV CVVKVEGIPY LCKTDEVGEI 751 800 ENSTTRP00000015566/1-1513 CVNSSATATA YYGLLGITKN IFETVPVTAG GTPVSDRPFT RTGLLGFIGP ENSP00000392066/1-1571 CVSSSATGTA YYGLLGITKN VFEAVPVTTG GAPIFDRPFT RTGLLGFIGP bmy_18699T0/1-1120 -------ALP PEALQPASPQ PAQTVPVTAG GAPISDRPFT RTGLLGFIGP ENSBTAP00000053376/1-1570 CVDSSATATA YYGLLGITKN VFETVPVTAG GAPVSDRPFT RTGLLGFIGP BACU004339/1-1185 CVNSSATATA YYGLLGITKN IFETVPVTAG GAPISDRPFT RTGLLGFIGP 801 850 ENSTTRP00000015566/1-1513 DNLVFVVGKL DGLMVVGVRR HNADDIVATA LAVEPMKFVY RGRIAVFSVT ENSP00000392066/1-1571 DNLVFIVGKL DGLMVTGVRR HNADDVVATA LAVEPMKFVY RGRIAVFSVT bmy_18699T0/1-1120 DNLVFVVGKL DGLMVVGVRR HNADDIVATA LAVEPMKFVY RGRIAVFSVT ENSBTAP00000053376/1-1570 DDLVFVVGKL DGLMVVGFRR HNADDVVATA LAVEPMKFVY RGRIAVFSVT BACU004339/1-1185 DNLVFVVGKL DGLMVVGVRR HNADDIVATA LAVEPMKFVY RGRIAVFSVT 851 900 ENSTTRP00000015566/1-1513 VLHDDRIVLV AEQRPDASEE DSFQWMSRVL QAIDSIHQVG VYCLALVPAN ENSP00000392066/1-1571 VLHDDRIVLV AEQRPDASEE DSFQWMSRVL QAIDSIHQVG VYCLALVPAN bmy_18699T0/1-1120 VLHDDRIVLV AEQRPDASEE DSFQWMSRVL QAIDSIHQVG VYCLALVPAN ENSBTAP00000053376/1-1570 VLHDDRIVLV AEQRPDASEE DSFQWMSRVL QAIDSIHQVG VYCLALVPAN BACU004339/1-1185 VLHDDRIVLV AEQRPDASEE DSFQWMSRVL QAIDSIHQVG VYCLALVPAN 901 950 ENSTTRP00000015566/1-1513 TLPKAPLGGI HVSETKQRFL EGMLHPCNVL MCPHTCVTNL PKPRQKQPEV ENSP00000392066/1-1571 TLPKAPLGGI HISETKQRFL EGTLHPCNVL MCPHTCVTNL PKPRQKQPEV bmy_18699T0/1-1120 TLPKAPLGGI HVSETKQRFL EGMLHPCNVL MCPHTCVTNL PKPRQKQPEV ENSBTAP00000053376/1-1570 TLPKAPLGGI HVSETKQRFL EGMLHPCNVL MCPHTCVTNL PKPRQKQPEV BACU004339/1-1185 TLPKAPLGGI HVSEVKQRFL EGMLHPCSVL ICPHTCVTNL PRPRQKQPEV 951 1000 ENSTTRP00000015566/1-1513 GPASMVVGNL VAGKRIAQAS GRELSHLEDS DQARKLLFLP DVLRWRASTT ENSP00000392066/1-1571 GPASMIVGNL VAGKRIAQAS GRELAHLEDS DQARKFLFLA DVLQWRAHTT bmy_18699T0/1-1120 GPASMIVGNL VAGKRIAQAS GRELSHLEDS DQARKLLFLP DVLQWRARST ENSBTAP00000053376/1-1570 GPASMIVGNL VAGKRIAQAS GRELSHLEDS EQARKFLFLP DVLQWRAHTT BACU004339/1-1185 GPASMIVGNL VAGRRIAQAS GRELCHLEDS DQARKFLFLP DVLQWRAHST 1001 1050 ENSTTRP00000015566/1-1513 PEHLLFLLLS AKGTVTSTTT CIQLHKKAER VAAALMEKAR LTTGAHVALV ENSP00000392066/1-1571 PDHPLFLLLN AKGTVTSTAT CVQLHKRAER VAAALMEKGR LSVGDHVALV bmy_18699T0/1-1120 PEHLLFLLLN AKGTVTSTTT CIQLHKKAER VAAALMEKAR LTTGAHVALV ENSBTAP00000053376/1-1570 PEHPLFLLLN AKGTVTSTAT CVQLHKKAER VAAALMEKAR LSAGAHVALV BACU004339/1-1185 PEHLLFLLLN AKGTVTSTTT CIQLHKKAER VAAALMEKAR LTTGAHVALV 1051 1100 ENSTTRP00000015566/1-1513 YPPGVDLI-A FYGCMYCGCV PVTVRPPHPQ NLATTLPTVK MIVEVSKSAC ENSP00000392066/1-1571 YPPGVDLIAA FYGCLYCGCV PVTVRPPHPQ NLGTTLPTVK MIVEVSKSAC bmy_18699T0/1-1120 YPPGVDLIAA FYGCLYCGCV PVTVRPPHPQ NLTTTLPTVK MIVEVSKSAC ENSBTAP00000053376/1-1570 YPPGVDLIAA FYGCLYCGCV PVTVRPPHPQ NLATTLPTVK MIVEVSKSAC BACU004339/1-1185 YPPGVDLIAA FYGCLYCGCV PVTVRPPHPQ NLTTTLPTVK MIVEVSKSAC 1101 1150 ENSTTRP00000015566/1-1513 VLTTQAITRL LKSKEALAAV DVRTWPTILD TDDIPKKKVA SIFRPPSPDV ENSP00000392066/1-1571 VLTTQAVTRL LRSKEAAAAV DIRTWPTILD TDDIPKKKIA SVFRPPSPDV bmy_18699T0/1-1120 VLTTQAITRL LKSKEALAAV DVRTWPTILD TDDIPKKKVA SIFRPPSPDV ENSBTAP00000053376/1-1570 VLTTQAIMRL LRSKEAAATV DARTWPTILD TDDIPKKKVA SVFRPPSPDV BACU004339/1-1185 VLTTQAITRL LKSKEALAAV DARTWPTILD TDDIPKKKVA SIFRPPSPDV 1151 1200 ENSTTRP00000015566/1-1513 LAYLDFSVST TGILAGVKMS HAATSALCRS IKLQCELYPS GQIAICLDPY ENSP00000392066/1-1571 LAYLDFSVST TGILAGVKMS HAATSALCRS IKLQCELYPS RQIAICLDPY bmy_18699T0/1-1120 LAYLDFSVST TGILAGVKMS HAAASALCRS VKLQCELYPS RQVAVCLDPY ENSBTAP00000053376/1-1570 LAYLDFSVST TGILAGVKMS HAATSALCRS IKLQCELYPS RQIAICLDPY BACU004339/1-1185 LAYLDFSVST TGILAGVKMS HAATSALCRS IKLQCELYPS RQIAICLDPY 1201 1250 ENSTTRP00000015566/1-1513 CGLGFALWCL GSVYSGHQSV LVPPPELETN VSLWLWAVSQ YKARVTFCSY ENSP00000392066/1-1571 CGLGFALWCL CSVYSGHQSV LVPPLELESN VSLWLSAVSQ YKARVTFCSY bmy_18699T0/1-1120 CGLGFALWCL CSVYSGHQSV LVPPPELETN VSLWLWAVSQ YKARVAFCSY ENSBTAP00000053376/1-1570 CGLGFALWCL CSVYSGHQSV LVPPPELETN VSLWLWAVSQ YKARVTFCSY BACU004339/1-1185 CGLGFALWCL CSVYSGHQSV LVPPPELEAN ASLWLWAVSQ YKARVTFCSY 1251 1300 ENSTTRP00000015566/1-1513 SVMEMCARGL GTQTAVLRMK GVNLSCVRTC MVVAEERPRI ALTQSFSKLF ENSP00000392066/1-1571 SVMEMCTKGL GAQTGVLRMK GVNLSCVRTC MVVAEERPRI ALTQSFSKLF bmy_18699T0/1-1120 SVMDMCARGL GAQTAVLRMK GVNLSCVRTC MVVAEERPRI ALTQSFSKLF ENSBTAP00000053376/1-1570 SVMEMCARGL GAQTAALRMK GVNLSCVRTC MVVAEERPRI ALTQSFSKLF BACU004339/1-1185 SVMETCARGL GAQTAVLRMK GVNLSCVRTC MVVAEERPRI ALTQSFSKLF 1301 1350 ENSTTRP00000015566/1-1513 RDLGLPARAV STTFGCRVNV AICLQGTAGP DPTTVYVDMR ALRHD----- ENSP00000392066/1-1571 KDLGLPARAV STTFGCRVNV AICLQGTAGP DPTTVYVDMR ALRHDRVRLV bmy_18699T0/1-1120 RDLGLPARAV STTFGCRVNV AICLQGTAGP DPTTVYVDMR ALRHDRVRLV ENSBTAP00000053376/1-1570 RDLGLPARAV STTFGCRVNV AICLQGTAGP DPTTVYVDMR ALRHDRVRLV BACU004339/1-1185 RDLGLPARAV STTFGCRVNV AICLQGTAGP DPTTVYVDMR ALRHDRVRLV 1351 1400 ENSTTRP00000015566/1-1513 ---------- -----ILPGV KVIIAHSETR GPLGDSHLGE XXXXXXXXXX ENSP00000392066/1-1571 ERGSPHSLPL MESGKILPGV KVIIAHTETK GPLGDSHLGE IWVSSPHNAT bmy_18699T0/1-1120 ERGSPHSLPL TESGKILPGV KVIIAHTGTR GPLGDSHLGE VWVSSPHSAT ENSBTAP00000053376/1-1570 ERGSPHSLPL TESGKILPGV KVIIAHTETR GPLGDSHLGE IWVSSPHNAT BACU004339/1-1185 ERGSPHSLPL TESGKILPGV KVIIAHTETR GPLGDSHLGE VWVSSPHSAT 1401 1450 ENSTTRP00000015566/1-1513 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR ENSP00000392066/1-1571 GYYTVYGEEA LHADHFSARL SFGDTQTIWA RTGYLGFLRR TELTDASGGR bmy_18699T0/1-1120 GYYTVYGEEG LHADHFSARL SFGDTQTVWA RTGFLGFLRR TELTDASGER ENSBTAP00000053376/1-1570 GYYTVYGEEG LHADHFSARL SFGDTQTVWA RTGFLGFLRR TELTDASGER BACU004339/1-1185 GYYTVYGEEG LHADHFSARL SFGDTQTVWA RTGFLGFLRR TELTDASGER 1451 1500 ENSTTRP00000015566/1-1513 HDALYVVGSL DETLELRGMR YHPVDIETSV VRAHRSIAEC AVFTWTNLLV ENSP00000392066/1-1571 HDALYVVGSL DETLELRGMR YHPIDIETSV IRAHRSIAEC AVFTWTNLLV bmy_18699T0/1-1120 HDALYVVGSL DETLELRGMR YHPVDIETSV IRAHRSIAEC AVFTWTNLLV ENSBTAP00000053376/1-1570 HDALYVVGSL DETLELRGMR YHPIDIETSV IRAHRSIAEC AVFTWTNLLV BACU004339/1-1185 HDALYVVGSL DEALELRGMR YHPVDIETSV IRAHRSVAEC AVFTWTNLLV 1501 1550 ENSTTRP00000015566/1-1513 VVVELDGLEQ DALDLVALVT NVVLEEHHLV VGVVVIVDPG VIPINSRGEK ENSP00000392066/1-1571 VVVELDGLEQ DALDLVALVT NVVLEEHYLV VGVVVIVDPG VIPINSRGEK bmy_18699T0/1-1120 VVVELDGLEQ DALDLVALVT NAVLEEHLLV VGVVVIVDPG VIPINSRGEK ENSBTAP00000053376/1-1570 VVVELDGLEQ DALDLVALVT NVVLEEHHLV VGVVVIVDPG VIPINSRGEK BACU004339/1-1185 VVVELDGLEQ DALDLVALVT NAVLEEHLLV VGVVVIVDPG VIPINSRGEK 1551 1600 ENSTTRP00000015566/1-1513 QRMHLRDGFL ADQLDPIYVA YNM ENSP00000392066/1-1571 QRMHLRDGFL ADQLDPIYVA YNM bmy_18699T0/1-1120 QRMHLRDGFL ADQLDPIYVA YNM ENSBTAP00000053376/1-1570 QRMHLRDGFL ADQLDPIYVA YNM BACU004339/1-1185 QRMHLRDGFL ADQLDPIYVA YNM