KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:24 2014 Check: 00 .. Name: ENSBTAP00000053387/1-1346 Len: 1355 Check: 1591 Weight: 1.00 Name: ENSP00000325326/1-1342 Len: 1355 Check: 476 Weight: 1.00 Name: bmy_06252T0/1-1199 Len: 1355 Check: 1944 Weight: 1.00 Name: ENSTTRP00000011482/1-1344 Len: 1355 Check: 9343 Weight: 1.00 Name: BACU011372/1-1353 Len: 1355 Check: 4612 Weight: 1.00 // 1 50 ENSBTAP00000053387/1-1346 MEENEVESSS DAAPRPGRPE EPTESGLGVG TSEAVSADSS DAAAAPGPAE ENSP00000325326/1-1342 MEENEVESSS DAAPGPGRPE EPSESGLGVG TSEAVSADSS DAAAAPGQAE bmy_06252T0/1-1199 MEENEVESSS DAAPGPGRPE EPSESGLGVG TSEAVSADSS DAAAAPGPAE ENSTTRP00000011482/1-1344 MEENEVESSS DTAPGPGRPE EPSESGLGVG TSEAVSADSS DAAAASGPAE BACU011372/1-1353 MEENEVESSS DAAPGPGRPE EPSESGLGVG TSEAVSADSS DAAAAPGPAE 51 100 ENSBTAP00000053387/1-1346 ADDSGVGQSS DRGSSSLEEV SESSSTTDPL PHGYLPDSSS VSRGPAAGVM ENSP00000325326/1-1342 ADDSGVGQSS DRGSRSQEEV SESSSSADPL PNSYLPDSSS VSHGPVAGVT bmy_06252T0/1-1199 ADDSGVGQSS DRGTSSLEEV SESSSSTDPL PHGYLPDSSS VSHGPVAGVT ENSTTRP00000011482/1-1344 ADDSGVGQSS DRGTSSLEEV SESSSSTEPL PHGYLPDSSS VSHGPVAGVT BACU011372/1-1353 ADDSGVGQSS DRGTSSLEEV SESSSSTDPL PHGYLPDSSS VSHGPVAGVT 101 150 ENSBTAP00000053387/1-1346 GGPPALVHSS ALPDPNMLVS DCTASSSDLG SAIDKIIEST IGTDLIRSCI ENSP00000325326/1-1342 GGPPALVHSS ALPDPNMLVS DCTASSSDLG SAIDKIIEST IGPDLIQNCI bmy_06252T0/1-1199 GGPPALVHSS ALPDPNMLVS DCTASSSDLG SAIDKIIEST IGPDLIQSCI ENSTTRP00000011482/1-1344 GGPPALVHSS ALPDPNMLVS DCTASSSDLG SAIDKIIEST IGPDLIQSCI BACU011372/1-1353 GGPPALVHSS ALPDPNMLVS DCTASSSDLG SAIDKIIEST IGPDLIQSCI 151 200 ENSBTAP00000053387/1-1346 TVTSAEGSGA EATRYLILQG PDDGAPMASP MSSSTLAHSL AAIEALADGP ENSP00000325326/1-1342 TVTSAEDGGA ETTRYLILQG PDDGAPMTSP MSSSTLAHSL AAIEALADGP bmy_06252T0/1-1199 TVTSAEGSGS ETTRYLILQG PDDGAPMVSP MSSSTLAHSL AAIEALADGP ENSTTRP00000011482/1-1344 TVTSAEGGGS ETTRYLILQG PDDGAPMASP MSSSTLAHSL AAIEALADGP BACU011372/1-1353 TVTSAEGSGS ETTRYLILQG PDDGAPMVSP MSSSTLAHSL AAIEALADGP 201 250 ENSBTAP00000053387/1-1346 TSTSTCLEPP EEAQGGPSSP AQPPLGSGTE EPDLQSLEAM MEVVVVQQFK ENSP00000325326/1-1342 TSTSTCL--- -EAQGGPSSP VQLPPASGAE EPDLQSLEAM MEVVVVQQFK bmy_06252T0/1-1199 TSTSTCLEPP EEVQGGPSSP AQPRLGSGAE EPDLQSLEAM MEVVVVQQFK ENSTTRP00000011482/1-1344 TSTSTCLEPP EEVQGGPSSP AQPCLGSGAE EPDLQSLEAM MEVVVVQQFK BACU011372/1-1353 TSTSTCLEPP EEVQGGPSSP AQPRLGSGAE EPDLQSLEAM MEVVVVQQFK 251 300 ENSBTAP00000053387/1-1346 CKMCQYRSST KATLLRHMRE RHFRPG---- ---ALIAVAA GKKGRPRKWG ENSP00000325326/1-1342 CKMCQYRSST KATLLRHMRE RHFRPV---- ---AAAAAAA GKKGRLRKWS bmy_06252T0/1-1199 CKMCQYRSSA KATLLRHMRE RHFCP----- -----AAAAA GKKGRLRKWG ENSTTRP00000011482/1-1344 CKMCQYRSSA KATLLRHMRE RHFCPV---- -----AAAAT GKKGRLRKWG BACU011372/1-1353 CKMCQYQSSA KATLLRHMRQ RHFCPVRRGK LVVPPAAAAA GKKGRLRKWG 301 350 ENSBTAP00000053387/1-1346 SSAQPQEEEG PEEEDDDDII DAGAIDDLEE DSDYNPADDE PRGRQLRAQR ENSP00000325326/1-1342 TSTKSQEEEG PEEEDDDDIV DAGAIDDLEE DSDYNPAEDE PRGRQLRLQR bmy_06252T0/1-1199 ASVRTQGEEG PEEEDDDDII DAGAIDDLEE DSDYNPAEDE PRGRQLRPQR ENSTTRP00000011482/1-1344 ASARTQEEEG PEEEDDDDII DAGAIDDLEE DSDYNPAEDE PRGRQLRPQR BACU011372/1-1353 ASARTQEEEG PEEEDDDDII DAGAIDDLEE DSDYNPAEDE PRGRQLRPQR 351 400 ENSBTAP00000053387/1-1346 PTPSTLRPRR RPGRPRKLPR LETLDLPDGV EGEPLVSPQS GQSPLEPQDP ENSP00000325326/1-1342 PTPSTPRPRR RPGRPRKLPR LEISDLPDGV EGEPLVSSQS GQSPPEPQDP bmy_06252T0/1-1199 PTPSTPRPRR RPGRPRKLPR LETSDLLDGV EGEPLVSSQT GQSPAEAQDS ENSTTRP00000011482/1-1344 PTPSTPRPRR RPGRPRKLPR LETSDLLDGV EGEPLVSSQT GQSPLEPQDP BACU011372/1-1353 PTPSTPRPRR RPGRPRKLPR LETSDLLDGV EGEPLVSSQT GQSPAEPQDP 401 450 ENSBTAP00000053387/1-1346 EAPSSSGRGR LVALGKANRA PVEPSVSQSD ARSAAASYQD EADALPRRRG ENSP00000325326/1-1342 EAPSSSGPGH LVAMGKVSRT PVEAGVSQSD AENAAPSCPD EHDTLPRRRG bmy_06252T0/1-1199 EAPSSSGPGR LVALRKANRP PVEPGVSQSD VENAAPSCQD EPDAPPRRRG ENSTTRP00000011482/1-1344 EAPSSSGPGR LVALGKANRP PVEPGMSQSD VENAAPSCQD EPDAPPRRRG BACU011372/1-1353 EAPSSSGPGR LVALGKANRP PVEPGVSQSD VENTAPSCQD EPDAPPRRRG 451 500 ENSBTAP00000053387/1-1346 RPSRRFLGKK YRKYYYKSPK PLLRPFLCRI CGSRFLSHED LRFHVNSHEA ENSP00000325326/1-1342 RPSRRFLGKK YRKYYYKSPK PLLRPFLCRI CGSRFLSHED LRFHVNSHEA bmy_06252T0/1-1199 RPSRRFLGKK YRKYYYKSPK PLLRPFLCRI CGSRFLSHED LRFHVNSHEA ENSTTRP00000011482/1-1344 RPSRRFLGKK YRKYYYKSPK PLLRPFLCRI CGSRFLSHED LRFHVNSHEA BACU011372/1-1353 RPSRRFLGKK YRKYYYKSPK PLLRPFLCRI CGSRFLSHED LRFHVNSHEA 501 550 ENSBTAP00000053387/1-1346 GNPQLFRCLQ CSYRSRRWSS LKEHMFNHVG SKPYKCDKCS YTSVYRKDVI ENSP00000325326/1-1342 GDPQLFKCLQ CSYRSRRWSS LKEHMFNHVG SKPYKCDECS YTSVYRKDVI bmy_06252T0/1-1199 GNPQLFKCLQ CSYRSRRWSS LKEHMFNHMG SKPYKCDECS YTSVYRKDVI ENSTTRP00000011482/1-1344 GNPQLFKCLQ CSYRSRRWSS LKEHMFNHVG SKPYKCDECS YTSVYRKDVI BACU011372/1-1353 GNPQLFKCLQ CSYRSRRWSS LKEHMFNHMG SKPYKCDECS YTSVYRKDVI 551 600 ENSBTAP00000053387/1-1346 RHAAVHSRDR KKRPDPTPKL SSFPCPVCGR VYPMQKRLTQ HMKTHSTEKP ENSP00000325326/1-1342 RHAAVHSRDR KKRPDPTPKL SSFPCPVCGR VYPMQKRLTQ HMKTHSTEKP bmy_06252T0/1-1199 RHAAVHSRDR KKRPDPTPKL SSFPCPVCGR VYPMQKRLTQ HMKTHSTEKP ENSTTRP00000011482/1-1344 RHAAVHSRDR KKRPDPTPKL SSFPCPVCGR VYPMQKRLTQ HMKTHSTEKP BACU011372/1-1353 RHAAVHSRDR KKRPDPTPKL SSFPCPVCGR VYPMQKRLTQ HMKTHSTEKP 601 650 ENSBTAP00000053387/1-1346 HMCDKCGKSF KKRYTFKMHL LTHIQAVANR RFKCEFCEFV CEDKKALLNH ENSP00000325326/1-1342 HMCDKCGKSF KKRYTFKMHL LTHIQAVANR RFKCEFCEFV CEDKKALLNH bmy_06252T0/1-1199 HMCDKCGKSF KKRYTFKMHL LTHIQAVANR RFKCEFCEFV CEDKKALLNH ENSTTRP00000011482/1-1344 HMCDKCGKSF KKRYTFKMHL LTHIQAVANR RFKCEFCEFV CEDKKALLNH BACU011372/1-1353 HMCDKCGKSF KKRYTFKMHL LTHIQAVANR RFKCEFCEFV CEDKKALLNH 651 700 ENSBTAP00000053387/1-1346 QLSHVSDKPF KCSFCPYRTF REDFLLSHVA VKHTGAKPFA CEYCHFSTRH ENSP00000325326/1-1342 QLSHVSDKPF KCSFCPYRTF REDFLLSHVA VKHTGAKPFA CEYCHFSTRH bmy_06252T0/1-1199 QLSHVSDKPF KCSFCPYRTF REDFLLSHVA VKHTGAKPFA CEYCHFSTRH ENSTTRP00000011482/1-1344 QLSHVSDKPF KCSFCPYRTF REDFLLSHVA VKHTGAKPFA CEYCHFSTRH BACU011372/1-1353 QLSHVSDKPF KCSFCPYRTF REDFLLSHVA VKHTGAKPFA CEYCHFSTRH 701 750 ENSBTAP00000053387/1-1346 KKNLRLHVRC RHASSFEDWG RRHPEEPPSR RRPFFSLQQI EELKQQHSTA ENSP00000325326/1-1342 KKNLRLHVRC RHASSFEEWG RRHPEEPPSR RRPFFSLQQI EELKQQHSAA bmy_06252T0/1-1199 KKNLRLHVRC RHASSFEEWG RRHPEEPPSR RRPFFSLQQI EELKQQHGAA ENSTTRP00000011482/1-1344 KKNLRLHVRC RHASSFEEWG RRHPEEPPSR RRPFFSLQQI EELKQQHSAA BACU011372/1-1353 KKNLRLHVRC RHASSFEEWG RRHPEEPPSR RRPFFSLQQI EELKQQHGAA 751 800 ENSBTAP00000053387/1-1346 PGPPASSPGP PEIPSEAAPS QSPETPPLLC SDTLGGATII YQPGTAESTA ENSP00000325326/1-1342 PGPPPSSPGP PEIPPEATTF QSSEAPSLLC SDTLGGATII YQQGAEESTA bmy_06252T0/1-1199 PGPPPRSPGP PEIPPEAAPL QSPETPPLLC SDTLXGATII YQQGAEESTA ENSTTRP00000011482/1-1344 PGPPPSSPGP PEIPPEAAPL QSPETPPLLC SDTLGGATII YQQGAEESTA BACU011372/1-1353 PGPPPRSPGP PETPPEAAPL QSPEAPPLLC SDTLGGATII YQQGAEESTA 801 850 ENSBTAP00000053387/1-1346 VATQTALDLL LNMSTQRELG GTALQVAVVK SEDVEAGLVS SGGQPSPAGT ENSP00000325326/1-1342 MATQTALDLL LNMSAQRELG GTALQVAVVK SEDVEAGLAS PGGQPSPEGA bmy_06252T0/1-1199 MATQTALDLL LNMSTQRELG SAALQVAVVK SEGVEAGFAS SGGQPSPAGA ENSTTRP00000011482/1-1344 MATQTALDLL LNMSARRELG SAALQVAVVK SEDVEAGFAS SGGQPSPAGA BACU011372/1-1353 MATQTALDLL LNMSTQRELG SAALQVAVVK SEDMEAGFAS SGGQPSPAGA 851 900 ENSBTAP00000053387/1-1346 TPQVVTLHMA DPGGSVAAES QLAPPDLQQI TLAPGPFGGA GYSVITAPTV ENSP00000325326/1-1342 TPQVVTLHVA EPGGGAAAES QLGPPDLPQI TLAPGPFGGT GYSVITAPPM bmy_06252T0/1-1199 TPQVVALHMA EPGGSAAAES QLGAPDLHQI TLAPGPFGGA GYSVITAPTM ENSTTRP00000011482/1-1344 TPQVVALHMA EPGGSVAAES QLGTPDLQQI TLAPGPFGGA GYSVITAPTM BACU011372/1-1353 TPQVVALHMA EPGGSATAES QLGAPDLHQI TLAPGPFGGA GYSVITAPTV 901 950 ENSBTAP00000053387/1-1346 EEGTSTPGTP YSEEPPGEAA QTVVVGDTLK EAGTHFIMAA DGTQLHHIQL ENSP00000325326/1-1342 EEGTSAPGTP YSEEPAGEAA QAVVVSDTLK EAGTHYIMAT DGTQLHHIEL bmy_06252T0/1-1199 EEGTSAPGTP YSEEPPGEAA QAVVVSDTLK EAGTHFIMAA DGTQLHHIEL ENSTTRP00000011482/1-1344 EEGTSAPGIP YSEEPPGEAA QAAVVSDTLK EAGTHFIMAA DGTQLHHIEL BACU011372/1-1353 EEGTSAPGTP YSEEPPGEAA QAVVVSDTLK EAGTHFIMAA DGTQLHHIEL 951 1000 ENSBTAP00000053387/1-1346 TADSSISFPS TEALASGAKW PLLQYGGLPR DGPEPPAPAR THQPRDPQGS ENSP00000325326/1-1342 TADGSISFPS PDALASGAKW PLLQCGGLPR DGPEPPSPAK THCVGDSQSS bmy_06252T0/1-1199 TADGSISFPS PDALASGAKW PLLQCGGLPR DGPEPPSPAR TRRVGDPQGS ENSTTRP00000011482/1-1344 TAHGPISFPS PDALASGAKW PLLQCGGLPR DGPEPPSPAR TRRVGDPQGS BACU011372/1-1353 TADGSISFPS PDGLASGAKW PLLQCGALPR DGPEPPSPAR TRRVRDPQGS 1001 1050 ENSBTAP00000053387/1-1346 ASPPPAASKP LGLVVPPSPP SAATASSKKF SCKICAEAFT GRAEMESHKR ENSP00000325326/1-1342 ASSPPATSKA LGLAVPPSPP SAATAASKKF SCKICAEAFP GRAEMESHKR bmy_06252T0/1-1199 ASPPPAASKA LGLVVPPSPP SAATASSKKF SCKICAEAFP GRAEMESHKR ENSTTRP00000011482/1-1344 ASPPPAASKA LGLVVPPSPP SAATASSKKF SCKICAEAFP GRAEMESHKR BACU011372/1-1353 ASPPPAASKA LGLVVPPSPP SAATASSKKF SCKICAEAFP GRAEMESHKR 1051 1100 ENSBTAP00000053387/1-1346 AHAGPGAFKC PDCPFSARQW PEVRAHMAQH SSLRPHQCSQ CSFASKNKKD ENSP00000325326/1-1342 AHAGPGAFKC PDCPFSARQW PEVRAHMAQH SSLRPHQCSQ CSFASKNKKD bmy_06252T0/1-1199 AHAGPSAFKC PDCPFSARQW PEVRAHMAQH SSLRPHQCNQ CSFASKNKKD ENSTTRP00000011482/1-1344 AHAGPSAFKC PDCPFSARQW PEVRAHMAQH SSLRPHQCNQ CSFASKNKKD BACU011372/1-1353 AHAGPSAFKC PDCPFSARQW PEVRAHMAQH SSLRPHQCNQ CSFASKNKKD 1101 1150 ENSBTAP00000053387/1-1346 LRRHMLTHTN EKPFECQLCG QRFNRNGHLK FHIQRLHSPD GRKTAAPTAR ENSP00000325326/1-1342 LRRHMLTHTK EKPFACHLCG QRFNRNGHLK FHIQRLHSPD GRKSGTPTAR bmy_06252T0/1-1199 LRRHMLTHTN EKPFECHLCG QRFNRNGHLK FHIQRLHSPD GRKAATPTAR ENSTTRP00000011482/1-1344 LRRHMLTHTN EKPFECHLCG QRFNRNGHLK FHIQRLHSPD GRKAATPTTR BACU011372/1-1353 LRRHMLTHTN EKPFECHLCG QRFNRNGHLK FHIQRLHSPD GRKAATPTAR 1151 1200 ENSBTAP00000053387/1-1346 APAR--PPTQ TIILNSDDET LATLHTAFQS SHGVLGPERL QQALGQEHIF ENSP00000325326/1-1342 APTQ--TPTQ TIILNSDDET LATLHTALQS SHGVLGPERL QQALSQEHII bmy_06252T0/1-1199 APAQ--TPTQ TIILNSDDET LATLHST--- ---------- ---------- ENSTTRP00000011482/1-1344 APAQTKTPTQ TIILNSDDET LATLHTALQS SHGVLGPERL QQALGQEHII BACU011372/1-1353 APAQ--TPTQ TIILNSDDET LATLHTALQS SHGVLGPERL QQALGQEHII 1201 1250 ENSBTAP00000053387/1-1346 VAQEQTVSNP EEAAYIQEIT TADGQMVQHL VASDSQVQYI ISPDGVQQLL ENSP00000325326/1-1342 VAQEQTVTNQ EEAAYIQEIT TADGQTVQHL VTSDNQVQYI ISQDGVQHLL bmy_06252T0/1-1199 ---------- ---------- ---------- ---------- -----VHHLP ENSTTRP00000011482/1-1344 VAQEQTVTDQ EEATYIQEIT TADGQMVQHL VTSDNQVQYI ISQDGVQHLL BACU011372/1-1353 VAQEQTVTNQ EEATYIQEIT TADGQMVQHL VTSDNQVQYI ISQDGVQHLL 1251 1300 ENSBTAP00000053387/1-1346 PQEYVVVPEG HHIQVQEGQI THIQYEQGAP FLQESQIQYV PVSPGQQLVT ENSP00000325326/1-1342 PQEYVVVPEG HHIQVQEGQI THIQYEQGAP FLQESQIQYV PVSPGQQLVT bmy_06252T0/1-1199 GRSPASAPPG ----IRRGP- ------RG-- ---------- PSHPGRPGLG ENSTTRP00000011482/1-1344 PQEYVVVPEG HHXXVQEGQI THI-YEQGAP -LQESQIQYV PVSPGQQLVT BACU011372/1-1353 PQEYVVVPEG HHIQVQEGQI THIQYEQGAP FLQESQIQYV PVSPGPQLVT 1301 1350 ENSBTAP00000053387/1-1346 QAQLEAAAHS AVTAVADAAM AQAQGLFGTE EAVPEHIQQL QHQGIEYDVI ENSP00000325326/1-1342 QAQLEAAAHS AVTAVADAAM AQAQGLFGTD ETVPEHIQQL QHQGIEYDVI bmy_06252T0/1-1199 RG-------- ---------- ---------- ---------- ---------- ENSTTRP00000011482/1-1344 QAQLEAAAHS AVTAVADAAM AQAQGLFGTE EAVPEHIQQL QHQGIEYDVI BACU011372/1-1353 QAQLEAAAHS AVTAVADAAM AQAQGLFGTE EAVPEHIQQL QHQGIEYDVI 1351 1400 ENSBTAP00000053387/1-1346 TLSDD ENSP00000325326/1-1342 TLADD bmy_06252T0/1-1199 ----- ENSTTRP00000011482/1-1344 TLTDD BACU011372/1-1353 TLTDD