KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:25 2014 Check: 00 .. Name: ENSTTRP00000011908/1-538 Len: 660 Check: 8786 Weight: 1.00 Name: ENSP00000368880/1-655 Len: 660 Check: 8112 Weight: 1.00 Name: ENSBTAP00000053389/1-624 Len: 660 Check: 2676 Weight: 1.00 Name: bmy_21277T0/1-469 Len: 660 Check: 8745 Weight: 1.00 Name: BACU015775/1-399 Len: 660 Check: 7761 Weight: 1.00 // 1 50 ENSTTRP00000011908/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000368880/1-655 MAEAPQVVEI DPDFEPLPRP RSCTWPLPRP EFSQSNSATS SPAPSGSAAA ENSBTAP00000053389/1-624 MAEAPQVVEI DPDFEPLPRP RSCTWPLPRP EFSQSNSATS SPAPSGGAAA bmy_21277T0/1-469 ---------- ---------- ---------- ---------- ---------- BACU015775/1-399 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011908/1-538 ---------- ---------- ---------- ---------- ---------- ENSP00000368880/1-655 NPDAAAGLPS ASAAAVSADF MSNLSLLEES EDFPQAPGSV AAAVAAAAAA ENSBTAP00000053389/1-624 NPDGAAGLPS ASAAAVNADF MSNLSLLEES GDFQQAPGSV AAA------- bmy_21277T0/1-469 ---------- ---------- ---------- ---------- ---------- BACU015775/1-399 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011908/1-538 ---------- --------HP APPQPPPPGP LSQHPPVPPA AAA----GPL ENSP00000368880/1-655 AATGGLCGDF QGPEAGCLHP APPQPPPPGP LSQHPPVPPA AA-----GPL ENSBTAP00000053389/1-624 ---------- ---------- --------AP LSQHPPVPPA AAAAAAGGQL bmy_21277T0/1-469 ---------- ---------- ---------- ---------- ---------- BACU015775/1-399 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000011908/1-538 AGQPRKSSSS RRNAWGNLSY ADLITKAIES SAEKRLTLSQ IYEWMVKSVP ENSP00000368880/1-655 AGQPRKSSSS RRNAWGNLSY ADLITKAIES SAEKRLTLSQ IYEWMVKSVP ENSBTAP00000053389/1-624 AGQPRKSSSS RRNAWGNLSY ADLITKAIES SAEKRLTLSQ IYEWMVKSVP bmy_21277T0/1-469 ---------- ---------- ---------- ---MFVIWSG FSNW--RSIV BACU015775/1-399 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000011908/1-538 YFKDKGDSNS SAGWKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368880/1-655 YFKDKGDSNS SAGWKNSIRH NLSLHSKFIR VQNEGTGKSS WWMLNPEGGK ENSBTAP00000053389/1-624 YFKDKGDSNS SAGWKNSIRH NLSLHSKFIR VQNEGTGKSS WWMLNPEGGK bmy_21277T0/1-469 FL------TW CFALQNSIRH NLSLHSKFIR VQNEGTGKSS WWMLNPEGGK BACU015775/1-399 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000011908/1-538 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000368880/1-655 SGKSPRRRAA SMDNNSKFAK SRSRAAKKKA SLQSGQEGAG DSPGSQFSKW ENSBTAP00000053389/1-624 SGKSPRRRAA SMDNNSKFAK SRGRAAKKKA SLQSGQEGAG DSPGSQFSKW bmy_21277T0/1-469 SGKSPRRRAA SMDNNSKFAK SRGRAAKKKA SLQAGQEGAG DSPGSQFSKW BACU015775/1-399 ---------- -MDNNSKFAK SRGRAAKKKA SLQAGQEGAG DSPGSQFSKW 301 350 ENSTTRP00000011908/1-538 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLGDGDVHS ENSP00000368880/1-655 PASPGSHSND DFDNWSTFRP RTSSNASTIS GRLSPIMTEQ DDLGEGDVHS ENSBTAP00000053389/1-624 PASPGSHSND DFDNWSTFRP RTSSNASTIS GRLSPIMTEQ DDLGDGDVHS bmy_21277T0/1-469 PASPGSHSND DFDNWSTFRP RTSSNASTIS GRLSPIMTEQ DDLGDGDVHS BACU015775/1-399 PASPGSHSND DFDNWSTFRP RTSSNASTIS GRLSPIMTEQ DDLGDGDVHS 351 400 ENSTTRP00000011908/1-538 MVYPPSAAKM ASTLPSLSEI SSPENMENLL DNLNLLSSPT SLTVSTQSSP ENSP00000368880/1-655 MVYPPSAAKM ASTLPSLSEI SNPENMENLL DNLNLLSSPT SLTVSTQSSP ENSBTAP00000053389/1-624 MVYPPSAAKM ASTLPSLSEI SNPENMENLL DNLNLLSSPT SLTVSTQSSP bmy_21277T0/1-469 MVYPPSAAKM ASTLPSLSEI SSPENMENLL DNLNLLSSPT SLTVSTQSSP BACU015775/1-399 MVYPPSAAKM ASTLPSLSEI SSPENMENLL DNLNLLSSPT SLTVSTQSSP 401 450 ENSTTRP00000011908/1-538 GTMMQQTPCY SFAPPNTSLN SPSPNYQKYT YGQSSMSPLP QMPMQTLQDS ENSP00000368880/1-655 GTMMQQTPCY SFAPPNTSLN SPSPNYQKYT YGQSSMSPLP QMPIQTLQDN ENSBTAP00000053389/1-624 GTMMQQTPCY SFAPPNTSLN SPTPNYQKYT YGQSSMSPLP QMPMQTLQDN bmy_21277T0/1-469 GTMMQQTPCY SFAPPNTSLN SPSPNYQKYT YGQSSMSPLP QMPMQTLQDS BACU015775/1-399 GTMMQQTPCY SFAPPNTSLN SPSPNYQKYT YGQSSMSPLP QMPMQTLQDS 451 500 ENSTTRP00000011908/1-538 KSSYGGMSQY NCAPGLLKEL LTSDSPPHND IMTPVDPGVA QPSSRVLGQN ENSP00000368880/1-655 KSSYGGMSQY NCAPGLLKEL LTSDSPPHND IMTPVDPGVA QPNSRVLGQN ENSBTAP00000053389/1-624 KSSYGGMSQY -CAPGLLKEL LTSDSPPHND IMTPVDPGVA QANSRVLGQS bmy_21277T0/1-469 KSSYGGMSQY NCAPGLLKEL LTSDSPPHND IMTPVDPGVA QPNSRVLGQN BACU015775/1-399 KSSYGGMSQY NCAPGLLKEL LTSDSPPHND IMTPVDPGVA QPNSRVLGQN 501 550 ENSTTRP00000011908/1-538 VLMGPNSVMP AYGSQASHNK MMNPSSHSHP GHAQSTSAVN GRALPHAVNT ENSP00000368880/1-655 VMMGPNSVMS TYGSQASHNK MMNPSSHTHP GHAQQTSAVN GRPLPHTVST ENSBTAP00000053389/1-624 VLMGPNSVMP AYGGQASHNK MMTPSSHTHP GHAQSTSAVN GRALPHAVNT bmy_21277T0/1-469 VLMGPNSVMP AYGSQASHNK MMNPSSHTHP GHAQPTSAVN GRALPHAVNT BACU015775/1-399 VLMGPNSVMP AYGSQASHNK MMNPSSHTHP GHAQSTSAVN GRALPHAVNT 551 600 ENSTTRP00000011908/1-538 MPHTSGLSRL APVKTALQVP LPHPMQMNAL GGYSSVSSCN GYGRMGILHQ ENSP00000368880/1-655 MPHTSGMNRL TQVKTPVQVP LPHPMQMSAL GGYSSVSSCN GYGRMGLLHQ ENSBTAP00000053389/1-624 MPHTSGMNRL APVKTALQVP LAHPMQMSAL GGYSSVSSCN GYGRMGVLHQ bmy_21277T0/1-469 MPHTSGMSRL APVKTALQVP LPHPMQMNAL GGYSSVSSCN GYGRMGVLHQ BACU015775/1-399 MPHTSGMSRL APVKTALQVP LPHPMQMSAL GGYSSVSSCN GYGRMGVLHQ 601 650 ENSTTRP00000011908/1-538 EKLPSDLDGM FIERLDCDME SIIRNDLMDG DTLDFNFDNV LPNQSFPHSV ENSP00000368880/1-655 EKLPSDLDGM FIERLDCDME SIIRNDLMDG DTLDFNFDNV LPNQSFPHSV ENSBTAP00000053389/1-624 EKLPSDLDGM FIERLDCDME SIIRNDLMDG DTLDFNFDNV LPNQSFPHSV bmy_21277T0/1-469 EKLPSDLDGM FIERLDCDVE SIIRNDLMDG DTLDFNFDNV LPNQSFPHSV BACU015775/1-399 EKLPSDLDGM FIERLDCDVE SIIRNDLMDG DTLDFNFDNV LPNQSFPHSV 651 700 ENSTTRP00000011908/1-538 KTTTHSWVSG ENSP00000368880/1-655 KTTTHSWVSG ENSBTAP00000053389/1-624 KTTTHSWVSG bmy_21277T0/1-469 KTTTHSWVSG BACU015775/1-399 KTTTHSWVSG