KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:26 2014 Check: 00 .. Name: BACU006210/1-315 Len: 628 Check: 989 Weight: 1.00 Name: ENSP00000343657/1-563 Len: 628 Check: 929 Weight: 1.00 Name: ENSTTRP00000010871/1-561 Len: 628 Check: 7975 Weight: 1.00 Name: bmy_09397T0/1-524 Len: 628 Check: 3160 Weight: 1.00 Name: ENSBTAP00000053392/1-565 Len: 628 Check: 8528 Weight: 1.00 // 1 50 BACU006210/1-315 -----MLPLN L--------- ---------- ---------- ---------- ENSP00000343657/1-563 --MWAVLRLA LRPCARASPA GPRAYHGDSV ASLGTQPDLG SALYQENYKQ ENSTTRP00000010871/1-561 --MWAAPRLA LRRCARAAAP APRAYHGDSV ATLGTQPDSS SAIYQENYEQ bmy_09397T0/1-524 --MWAALRLA LRPCARAAAP APRAYHGDSV ATLGTQPDSS SAIYQENYEQ ENSBTAP00000053392/1-565 AAMWAALRLA LRPCARAAAP ALRSYHGDSV ATLGTQPDSS SAIYQENYEQ 51 100 BACU006210/1-315 LKIL------ ---------- ---------- ---------- ---------- ENSP00000343657/1-563 MKALVNQLHE RVEHIKLG-- -------GGE KARALHISRG KLLPRERIDN ENSTTRP00000010871/1-561 MKALVNQLRE RAQNIRLG-- -------GGE KARARHISRG KLLPRERVDN bmy_09397T0/1-524 MKALVNQLQE RAQNIRLGEE RTEQSSLGGK PGKDKAFF-- TVLPG---TN ENSBTAP00000053392/1-565 MKALVNQLHE RAQSIRLG-- -------GGE KARARHISRG KLLPRERIDN 101 150 BACU006210/1-315 ---------- ---------- ---------- ---------- ---------- ENSP00000343657/1-563 LIDPG----- -SPFLELSQF AGYQLYDNEE VPGGGIITGI GRVSGVECMI ENSTTRP00000010871/1-561 LIDPG----- -SPFLELSQF AGQD--GDEE VPXXXXXXXX XXXXXVECII bmy_09397T0/1-524 TVMPGRWILH RSPFLELSQF AGYQLYGDEE VPAGGIITGI GRVSGVECII ENSBTAP00000053392/1-565 LIDPG----- -SPFLELSQF AGYQLYGDEE VPAGGVITGI GRVSGVECMI 151 200 BACU006210/1-315 ---------- ---------- ---------- ---------- ---------- ENSP00000343657/1-563 IANDATVKGG AYYPVTVKKQ LRAQEIAMQN RLPCIYLVDS GGAYLPRQAD ENSTTRP00000010871/1-561 VANDATVKGG TYYPVTVKKH LRAQEIAMQN RLPCIYLXXX XXXXXXXXXX bmy_09397T0/1-524 VANDATVKG- ---------- ---------- -------VDS GGANLPRQAE ENSBTAP00000053392/1-565 VANDATVKGG SYYPVTVKKH LRAQEIAMQN RLPCIYLVDS GGANLPRQAE 201 250 BACU006210/1-315 ---------- ---------- ---------- ---------- ---------- ENSP00000343657/1-563 VFPDRDHFGR TFYNQAIMSS KNIAQIAVVM GSCTAGGAYV PAMADENIIV ENSTTRP00000010871/1-561 VFPDRDHFGR IFYNQAVMSS KSIIQIAVVM GSCTAGGAYV PAMADENIIV bmy_09397T0/1-524 VFPDRDHFGR IFYNQAVMSS KSIIQIAVVM GSCTAGGAYV PAMADENIIV ENSBTAP00000053392/1-565 VFPDRDHFGR IFYNQAVMSS KSITQIAVVM GSCTAGGAYV PAMADENIIV 251 300 BACU006210/1-315 ---------- ---------- ---------- ---------- -YFLLXXXX- ENSP00000343657/1-563 RKQGTIFLAG PPLVKAATGE EVSAEDLGGA DLHCRKSGVS DHWALDDHHA ENSTTRP00000010871/1-561 RKQGTIFLGG PPLVKAATGE EVSAEDLGGA DLHCRKSGVS DYYALDDNHA bmy_09397T0/1-524 RKQGTIFLGG PPLVKAATGE EVSAEDLGGA DLHCRKSGVS DYYALDDNHA ENSBTAP00000053392/1-565 RKQGTIFLGG PPLVKAATGE EVSAEDLGGA DLHCRKSGVS DYYALDDNHA 301 350 BACU006210/1-315 ---------- ---------- ---------- XXELYGIVGA NLIRNFDVRE ENSP00000343657/1-563 LHLTRKVVRN LNYQKKLDVT IEPSEEPLFP ADELYGIVGA NLKRSFDVRE ENSTTRP00000010871/1-561 LHLARKIVRN LNYQKNMDVT IEPSEDPLFP ADELYGIVGA NLKRNFDVRE bmy_09397T0/1-524 LHLARKIVRN LNYQKKMDVT IEPSEDPLFP ADELYGIVGA NLKRNFDVRE ENSBTAP00000053392/1-565 LHLARKIVRS LNYQKKMDVT IEPSEDPLFP ADELYGIVGA NLKRNFDVRE 351 400 BACU006210/1-315 VIARIVDGSR FNEFKALYGD TLVTGFARIF GYPIGIVGNN GVLFSESAKK ENSP00000343657/1-563 VIARIVDGSR FTEFKAFYGD TLVTGFARIF GYPVGIVGNN GVLFSESAKK ENSTTRP00000010871/1-561 VIARIVDGSR FNEFKALYGD TLVTGFARIF GYPVGIVGNN GVLFSESAKK bmy_09397T0/1-524 VIARIVDGSR FNEFKALYGD TLVTGFARIF GYPVGIVGNN GVLFSESAKK ENSBTAP00000053392/1-565 VIARIVDGSR FNEFKALYGD TLVTGFARIF GYPIGIVGNN GVLFSESAKK 401 450 BACU006210/1-315 GAHFIQLCCQ RNIPLLFLQN ITGFMVGRDY EAEGIAKDGA KMVTAVACAN ENSP00000343657/1-563 GTHFVQLCCQ RNIPLLFLQN ITGFMVGREY EAEGIAKDGA KMVAAVACAQ ENSTTRP00000010871/1-561 GAHFIQLCCQ RNIPLLFLQN ITGFMVGREY EAEGIAKDGA KMVTAVACAN bmy_09397T0/1-524 AR-------- ---------- ---FMVGRDY EAEGIAKDGA KMVTAVACAN ENSBTAP00000053392/1-565 GAHFIQLCCQ RNIPLLFLQN ITGFMVGRDY EAEGIAKDGA KMVTAVACAN 451 500 BACU006210/1-315 VPKITVIIGG SYGAGNYGMC GRAFSPRFLY LWPNARISVM GGEQAANVLA ENSP00000343657/1-563 VPKITLIIGG SYGAGNYGMC GRAYSPRFLY IWPNARISVM GGEQAANVLA ENSTTRP00000010871/1-561 VPKITVIIGG SYGAGNYGMC GRAFSPRFLY LWPNARISVM GGEQAANVLA bmy_09397T0/1-524 VPKITVIIGG SYGAGNYGMC GRAFSPRFLY LWPNARISVM GGEQAANVLA ENSBTAP00000053392/1-565 VPKITVIIGG SYGAGNYGMC GRAYSPRFLY LWPNARISVM GGEQAANVLA 501 550 BACU006210/1-315 TVAKDQRARE GKQFSSADEA TLKEPIIKRF EEEGNPYYSS ARLRLAIKGG ENSP00000343657/1-563 TITKDQRARE GKQFSSADEA ALKEPIIKKF EEEGNPYYSS ARV---WDDG ENSTTRP00000010871/1-561 TVAKDQRARE GKQFSSADEA TLKEPIIKRF EEEGNPYYSS ARL---WDDG bmy_09397T0/1-524 TVAKDQRARE GKPFSSADAA TLKEPIIKRF EEEGNPYYSS ARL---WDDG ENSBTAP00000053392/1-565 TVAKDQRARE GKQFSSADEA ALKEPIIKRF EEEGNPYYSS ARL---WDDG 551 600 BACU006210/1-315 SAGCPRSAGF QHHGEPLPAA AAPRCRPAVS ATSAGHPSPG GRRAPAASPG ENSP00000343657/1-563 IID------- ---------- ------PADT RLVLGLSFSA ALNAPIEKTD ENSTTRP00000010871/1-561 IID------- ---------- ------PVDT RLVLGLSLSA ALNAPIQKTN bmy_09397T0/1-524 IID------- ---------- ------PVDT RLVLGLSLSA ALNAPIQKTN ENSBTAP00000053392/1-565 IID------- ---------- ------PVDT RLVLGLSLSA ALNAPIHKTN 601 650 BACU006210/1-315 H-LLRRGGCL PREAADRSAA GSSEEAQE ENSP00000343657/1-563 FGIFRM---- ---------- -------- ENSTTRP00000010871/1-561 FGILRM---- ---------- -------- bmy_09397T0/1-524 FGILRM---- ---------- -------- ENSBTAP00000053392/1-565 FGILRM---- ---------- --------