KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:28 2014 Check: 00 .. Name: ENSP00000354238/1-925 Len: 925 Check: 7446 Weight: 1.00 Name: ENSBTAP00000053402/1-924 Len: 925 Check: 7758 Weight: 1.00 Name: ENSTTRP00000009401/1-925 Len: 925 Check: 1615 Weight: 1.00 Name: bmy_12934T0/1-587 Len: 925 Check: 5611 Weight: 1.00 Name: BACU014305/1-754 Len: 925 Check: 5013 Weight: 1.00 // 1 50 ENSP00000354238/1-925 MERDGCAGGG SRGGEGGRAP REGPAGNGRD RGRSHAAEAP GDPQAAASLL ENSBTAP00000053402/1-924 MERDSCAGGG SRGGEGGRGP REGLAGNGRD PGPGRAAEAS GEPQAAASLL ENSTTRP00000009401/1-925 MERDGCVGVG NRGGEGGRGS REGPAGNGRH LGRGSTAEAP GEPLAASSLL bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 ---------- -MGAEGFK-- ---------- ---------- ---------- 51 100 ENSP00000354238/1-925 APMDVGEEPL EKAARARTAK DPNTYKVLSL VLSVCVLTTI LGCIFGLKPS ENSBTAP00000053402/1-924 APMDLGEEPL ERAARARPAK DPNTYKVLSL VLSVCVLTTI LGCIFGLKPS ENSTTRP00000009401/1-925 APMDLGEEPL EKAARARTAK DPNTYKVLSL VLSVCVLTTI LGCIFGLKPS bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000354238/1-925 CAKEVKSCKG RCFERTFGNC RCDAACVELG NCCLDYQETC IEPEHIWTCN ENSBTAP00000053402/1-924 CAKEIKSCKG RCFERTFGNC RCDAACVDLG NCCLDYQETC IEPERIWTCT ENSTTRP00000009401/1-925 CAKEVKSCKG RCFERTFGNC RCDVACVDLG NCCLDYQETC IEPERIWTCS bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 ----IKSCKG RCFERTFGNC RCDVACVDLG NCCLDYQETC IEPERIWTCS 151 200 ENSP00000354238/1-925 KFRCGEKRLT RSLCACSDDC KDKGDCCINY SSVCQGEKSW VEEPCESINE ENSBTAP00000053402/1-924 KFRCGEKRLS RSLCSCSDDC KDKGDCCINH GSVCRGEKSW AEEECDSIDE ENSTTRP00000009401/1-925 KFRCGEKRLS RSLCSCSDDC KDKGDCCINH GSVCRGEKSW AEETCESING bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 KFRCGEKRLS RSLCSCSDDC KDKGDCCVNH GSVCR----- ---------- 201 250 ENSP00000354238/1-925 PQCPAGFETP PTLLFSLDGF RAEYLHTWGG LLPVISKLKK CGTYTKNMRP ENSBTAP00000053402/1-924 PQCPAGFETP PTLLFSLDGF RAEYLHTWGG LLPVISKLKT CGTYTKNMRP ENSTTRP00000009401/1-925 PQCPAGFEMP PTLLFSLDGF RAEYLHTWGG LLPVISKLKT CGTYAKNLRP bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 ---------- ---------- ---------- --------ET CGTYAKNMRP 251 300 ENSP00000354238/1-925 VYPTKTFPNH YSIVTGLYPE SHGIIDNKMY DPKMNASFSL KSKEKFNPEW ENSBTAP00000053402/1-924 VYPTKTFPNH YSIVTGLYPE SHGIIDNNIY DPQMNANFAL KNKEKFNPEW ENSTTRP00000009401/1-925 VYPTKTFPNH YSIVTGLYPE SHGLIDNKMY DPQRNAYFAL KSKEKFNPEW bmy_12934T0/1-587 ---------- ---------- ---------- ---------- ---------- BACU014305/1-754 VYPTKTFPNH YSIVTGLYPE SHGLIDNKMY DPQMNAYFAL KSKEKFNPEW 301 350 ENSP00000354238/1-925 YKGEPIWVTA KYQGLKSGTF FWPGSDVEIN GIFPDIYKMY NGSVPFEERI ENSBTAP00000053402/1-924 YKGEPIWLTA KYQGLKTGTF FWPGSDVKIN GIFPDIYKIY NVSVPFEERI ENSTTRP00000009401/1-925 YKGEPIWLTA KYQGLKTGTF FWPGSDVKIN GIFPDIYKVY NGSVPFEERI bmy_12934T0/1-587 ---------- ---------- ---------- --------MY NGSVPFEERI BACU014305/1-754 YKGEPIWLTA KYQGLKTGTF FWPGSDVKIN GIFPDIYKMY NSSVPFEERI 351 400 ENSP00000354238/1-925 LAVLQWLQLP KDERPHFYTL YLEEPDSSGH SYGPVSSEVI KALQRVDGMV ENSBTAP00000053402/1-924 LAILKWLQLP KDERPHFYTL YLEEPDSSGH SYGPVSSEVI RALQRVDNMV ENSTTRP00000009401/1-925 LAVLKWLQLP KDERPHFYTL YLEEPDSSGH SYGPVSSEVI RALQRVDNMV bmy_12934T0/1-587 LAVLKWLQLP KDERPHFYTL YLEEPDSSGH SYGPVSSEVI RALQRVDNMV BACU014305/1-754 LAVLKWLQLP KDERPHFYTL YLEEPDSSGH SYGPVSSEVI RALQRVDNMV 401 450 ENSP00000354238/1-925 GMLMDGLKEL NLHRCLNLIL ISDHGMEQGS CKKYIYLNKY LGDVKNIKVI ENSBTAP00000053402/1-924 GMLMDGLKEL NLHRCLNLIL ISDHGMEQGS CKKYVYLNKY LGDTKDYKVV ENSTTRP00000009401/1-925 GMLMDGLKEL NLHRCLNLIL ISDHGMEQGS CKKYVYLSKY LGDIKNVKVI bmy_12934T0/1-587 GMLMDGLKEL NLHRCLNLIL ISDHGMEQGS CKKYVYLSKY LGDVKNVKVI BACU014305/1-754 GMLMDGLKEL NLHRCLNLIL ISDHGMEQGS CKKYVYLSKY LGDVKNVKVI 451 500 ENSP00000354238/1-925 YGPAARLRPS DVPDKYYSFN YEGIARNLSC REPNQHFKPY LKHFLPKRLH ENSBTAP00000053402/1-924 YGPAARLRPS DVPDKYYSFD YEGIAKNLSC QEPNQHFKPY LKHFLPKRLH ENSTTRP00000009401/1-925 YGPAARLRPS DVPDKYYSFN YEGIAKNLSC QEPNQHFKPY LKHFLPKRLH bmy_12934T0/1-587 YGPAARLRPS DVPDKYYSFN YEGIAKNLSC QEPNQHFIPY LKHFLPKRLH BACU014305/1-754 YGPAARLRPS DVPDKYYSFN YEGIAKNLSC QEPNQHFIPY LKHFLPKRLH 501 550 ENSP00000354238/1-925 FAKSDRIEPL TFYLDPQWQL ALNPSERKYC GSGFHGSDNV FSNMQALFVG ENSBTAP00000053402/1-924 FAKNDRIERL TFYLDPQWQL ALNPSERKYC GGGFHGSDNT FLNMQALFIG ENSTTRP00000009401/1-925 FAKSDRIEPL TFYLDPQWQL ALNTSERKYC GGGFHGSDNA FSNMQALFIG bmy_12934T0/1-587 FAKSDRIEPL TFYLDPQWQL ALNPSERKYC GGGFHGSDNA FSNMQALFIG BACU014305/1-754 FAKSDRIEPL TFYLDPQWQL ALNPSERKYC GGGFHGSDNA FSNMQALFIG 551 600 ENSP00000354238/1-925 YGPGFKHGIE ADTFENIEVY NLMCDLLNLT PAPNNGTHGS LNHLLKNPVY ENSBTAP00000053402/1-924 YGPGFKHSTE VDSFENIEVY NLMCDLLNLT PAPNNGTHGS LNHLLSNPVY ENSTTRP00000009401/1-925 YGPGFKHGIE VDSFENIEVY NLMCDLLNLT PAPNNGTHGS LNHLLKNPVY bmy_12934T0/1-587 YGPGFKHGIE VDSFENIEVY NLMCDLLNLT PAPNNGTHGS LNHLLKNPVY BACU014305/1-754 YGPGFKHGIE VDSFENIEVY NLMCDLLNLT PAPNNGTHGS LNHLLKNPVY 601 650 ENSP00000354238/1-925 TPKHPKEVHP LVQCPFTRNP RDNLGCSCNP SILPIEDFQT QFNLTVAEEK ENSBTAP00000053402/1-924 TPKHPKEVRP LVQCPFTRAP RESLDCSCDP SILPIVDFQT QLNLTMAEEK ENSTTRP00000009401/1-925 TPKHPKEFRS LVQCPFTGAP RESLDCSCDP SILPIVDFQT QLNLTMAEEK bmy_12934T0/1-587 TPKHPREFRS LVQCPFTRAP RESLDCSCDP SILPIVDFQT QLNLTMAEEK BACU014305/1-754 TPKHPREFRS LVQCPFTRAP RESLDCSCDP SILPIVDFQT QLNLTVAEEK 651 700 ENSP00000354238/1-925 IIKHETLPYG RPRVLQKENT ICLLSQHQFM SGYSQDILMP LWTSYTVDRN ENSBTAP00000053402/1-924 TIKRGALPYG RPRVLQ-NST VCLLYQHQFV SGYSRDILMP LWTSYTIGRN ENSTTRP00000009401/1-925 AIKRGTLPYG RPRVLWKNST VCLLYQHQFV SGYSHDILMP LWTAYTVDRN bmy_12934T0/1-587 AVKRGTLPYG RPRVLRKNST VCLLYQHQSV SGYSHDILMX LWTAYTIDRN BACU014305/1-754 AIKRGTLPYG RPRILRKNST VCLLYQHRF- ---------- ---------- 701 750 ENSP00000354238/1-925 DSFSTEDFSN CLYQDFRIPL SPVHKCSFYK NNTKVSYGFL SPPQLNKNSS ENSBTAP00000053402/1-924 DSFSTEDFSN CLYQDLRIPL SPVHKCSFYK NNAKLSYGLL SPPQLHKGSS ENSTTRP00000009401/1-925 ASFSTEDFSN CLYQDLRIPL RPVHKCSFYK NNTKLSYGFL SPPQLNKGSS bmy_12934T0/1-587 DSFSTEDFSN CLYQDLRIPL RPVHKCSFYK NNTKLSYGFL SPPQLNKGSS BACU014305/1-754 DSFSTEDFSN CLYQDLRIPL RPVHKCSFYK NNTKLSYGFL SPPQLNKGSS 751 800 ENSP00000354238/1-925 GIYSEALLTT NIVPMYQSFQ VIWRYFHDTL LRKYAEERNG VNVVSGPVFD ENSBTAP00000053402/1-924 QVYSEALLTT NIVPMYQSFQ VIWHYLHGTL LQRYAEERNG LNVVSGPVFD ENSTTRP00000009401/1-925 QVYSEALLTT NTVPMYQSFQ VTWHYFHGTL LQRYAEERNG LNVVSGPVFD bmy_12934T0/1-587 QVYSEALLTT NIVPMYQSFQ VIWHYFHGTL LQRYAEERNG LNVVSGPVFD BACU014305/1-754 QVYSEALLTT NIVPMYQSFQ VTWHYFLGTL LQRYAEERNG LNVVSGPVFD 801 850 ENSP00000354238/1-925 FDYDGRCDSL ENLRQKRRVI RNQEILIPTH FFIVLTSCKD TSQTPLHCEN ENSBTAP00000053402/1-924 SDYDGRYDSL ETLKQNSKII RNLEVLIPTH FFLVLTSCKN TSQTPLQCEN ENSTTRP00000009401/1-925 FDYDGHYDSL ETLKQNSRII RNQEILIPTH FFIVLTSCKD TSQTPSQCEN bmy_12934T0/1-587 SDYDGHYDSL ETLKQNSRII RNQEIMIPTH FFIVLTSCKN TSQTPSQCET BACU014305/1-754 SDYDGHYDSL ETLKQNSRII RNQEIMIPTH FFIVLTSCKN TSQTPSQCEN 851 900 ENSP00000354238/1-925 LDTLAFILPH RTDNSESCVH GKHDSSWVEE LLMLHRARIT DVEHITGLSF ENSBTAP00000053402/1-924 LDAMAFILPH KTDNSESCAH GKHESLWVEE LLKLHTARIT DVEHITGLSF ENSTTRP00000009401/1-925 LDTLAFILPH RTDNSESCAH GKHESSWVEE LLRRHRARIT DVEHITGLSF bmy_12934T0/1-587 LDTLAFILPH RTDNSESCAH GKHESSWVEE LLRRHRARIA DVEHITGLSF BACU014305/1-754 LDTLAFILPH RTDNSESCAH GKHESSWVEE LLRRHRARIA DVEHITGLSF 901 950 ENSP00000354238/1-925 YQQRKEPVSD ILKLKTHLPT FSQED ENSBTAP00000053402/1-924 YQERKEPISD ILKLKTHLPT FNQED ENSTTRP00000009401/1-925 YQERKEPISD ILKLKTHLPT FNQEG bmy_12934T0/1-587 YQERKEPISD ILKLKTHLPT FNQED BACU014305/1-754 YQERKEPISD ILKLKTHLPT FNQED