KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:28 2014 Check: 00 .. Name: bmy_10590T0/1-541 Len: 720 Check: 8242 Weight: 1.00 Name: ENSTTRP00000001390/1-691 Len: 720 Check: 9417 Weight: 1.00 Name: ENSP00000377262/1-699 Len: 720 Check: 4888 Weight: 1.00 Name: BACU006875/1-516 Len: 720 Check: 5656 Weight: 1.00 Name: ENSBTAP00000053405/1-687 Len: 720 Check: 5085 Weight: 1.00 // 1 50 bmy_10590T0/1-541 ---------- ---------- ---------- ------MQPR PWP------- ENSTTRP00000001390/1-691 ------LAIQ ARKRRPKREK HPKKPEPQQK APLV--PPPP PPPPPPPLAD ENSP00000377262/1-699 MSSRKVLAIQ ARKRRPKREK HPKKPEPQQK APLVPPPPPP PPPPPPPLPD BACU006875/1-516 ---------- ---------- ---------M GTLL------ ---------- ENSBTAP00000053405/1-687 ---------- ---VNRNSPS SCFRPEPQQK APLV--PPPP PPPPPPPLPD 51 100 bmy_10590T0/1-541 ---------- ---------- ---LCG---- ---------- ---------- ENSTTRP00000001390/1-691 PAPPEPEEEI LGSDDEEQED PADYCK---G GYHPVKIGDL FNGRYHVIRK ENSP00000377262/1-699 PTPPEPEEEI LGSDDEEQED PADYCK---G GYHPVKIGDL FNGRYHVIRK BACU006875/1-516 ---------- ---------- ---YCLAVLG ---------- ---------- ENSBTAP00000053405/1-687 PAPPEPEEEI LGSDDEEQED PADYCKAIIG GYHPVKIGDL FNGRYHVIRK 101 150 bmy_10590T0/1-541 ---------- ---------- ---------- -YADRRL--- ---------- ENSTTRP00000001390/1-691 LGWGHFSTVW LCWDMQGKRF VAMKVVKSAQ HYTETALDEI KLLKCVRESD ENSP00000377262/1-699 LGWGHFSTVW LCWDMQGKRF VAMKVVKSAQ HYTETALDEI KLLKCVRESD BACU006875/1-516 ---------- ---------- -------YAE MYPEMILNPV P--------- ENSBTAP00000053405/1-687 LGWGHFSTVW LCWDMQGKRF VAMKVVKSAQ HYTETALDEI KLLKCVRESD 151 200 bmy_10590T0/1-541 ---------- ---------- ---------- ------LVKR MAAEDL---- ENSTTRP00000001390/1-691 PTDPNKDMVV QLIDDFKISG MNGIHVCMVF EVLGHHLLKW IIKSNYQGLP ENSP00000377262/1-699 PSDPNKDMVV QLIDDFKISG MNGIHVCMVF EVLGHHLLKW IIKSNYQGLP BACU006875/1-516 ---------- ---------- ----DVCMVF EVLGHHLLKW IIKSNYQGLP ENSBTAP00000053405/1-687 PSDPNKDMVV QLIDDFKISG MNGIHVCMVF EVLGHHLLKW IIKSNYQGLP 201 250 bmy_10590T0/1-541 --CSLCCLLL VLQGLDYLHS KCKIIHTDIK PENILMCVDD AYVRRMAAEA ENSTTRP00000001390/1-691 VRCVKSIIRQ VLQGLDYLHS KCKIIHTDIK PENILMCVDD AYVRRMAAEA ENSP00000377262/1-699 VRCVKSIIRQ VLQGLDYLHS KCKIIHTDIK PENILMCVDD AYVRRMAAEA BACU006875/1-516 VRCVKSIIRQ VLQGLDYLHS KCKIIHTDIK PENILMCVDD AYVRRMAAEA ENSBTAP00000053405/1-687 VRCVKSIIRQ VLQGLDYLHS KCKIIHTDIK PENILMCVDD AYVRRMAAEA 251 300 bmy_10590T0/1-541 TEWQKAGAPP PSGSAVSTAP QQKPIGKISK NKKKKLKKKQ KRQAELLEKR ENSTTRP00000001390/1-691 TEWQKAGAPP PSGSAVSTAP QQKPIGKISK NKKKKLKKKQ KRQAELLEKR ENSP00000377262/1-699 TEWQKAGAPP PSGSAVSTAP QQKPIGKISK NKKKKLKKKQ KRQAELLEKR BACU006875/1-516 TEWQKAGAPP PSGSAVSTAP QQKPIGKISK NKKKKLKKKQ KRQAELLEKR ENSBTAP00000053405/1-687 TEWQKAGAPP PSGSAVSTAP QQKPIGKISK NKKKKMKKKQ KRQAELLEKR 301 350 bmy_10590T0/1-541 LQEIEELERE AERKIIEENV TSAVPSNEQD DEYHPEVKLK TAGLEEAAEG ENSTTRP00000001390/1-691 LQEIEELERE AERKIIEENV TSAVPSNEQD DEYHPEVKLK TAGLEEAAEG ENSP00000377262/1-699 LQEIEELERE AERKIIEENI TSAAPSNDQD GEYCPEVKLK TTGLEEAAEA BACU006875/1-516 LQEIEELERE AERKIIEENV TSAVPSNEQD DEYHPEVKLK TAGLEEAAE- ENSBTAP00000053405/1-687 LQEIEELERE AERKIIEENV TSVVPSNEQD DEYHPEVKLK TAGLEEVAEG 351 400 bmy_10590T0/1-541 ETANNNGEAE DQEEKEDTEK ENTEKDEDDV EQELANVDPT WIESPKTNGH ENSTTRP00000001390/1-691 ETANNNGEAE DQEEKEDTEK ENTEKDEDDV EQELANVDPT WMESPKTNGH ENSP00000377262/1-699 ETAKDNGEAE DQEEKEDAEK ENIEKDEDDV DQELANIDPT WIESPKTNGH BACU006875/1-516 ------GEAE DQEEKEDTEK ENTEKDEDDV EQELANVDPT WIESPKTNGH ENSBTAP00000053405/1-687 ETANNNGEAE DQEEKEDTEK ENTEKDEDDV EQELANIDPT WIESPKTNGH 401 450 bmy_10590T0/1-541 IENGPFLLEQ QLDDEDDDEE DCPNPEEYNL DEPNAESDYT YSSSYEQFNG ENSTTRP00000001390/1-691 IENGPFLLEQ QLDDEDDDEE DCPNPEEYNL DEPNAESDYT YSSSYEQFNG ENSP00000377262/1-699 IENGPFSLEQ QLDDEDDDEE DCPNPEEYNL DEPNAESDYT YSSSYEQFNG BACU006875/1-516 IENGPFLLEQ QLDDEDDDEE DCPNPEEYNL DEPNAESDYT YSSSYEQFNG ENSBTAP00000053405/1-687 IENGPFLLEQ QLDDEDDDEE DCPNPEECNL DEPNAESDYT YSSSYEQFNG 451 500 bmy_10590T0/1-541 ELPNGRHKIP ESQFPEFSTS LFSGPLEPVA CGSALSEGSP LTEHEESSPS ENSTTRP00000001390/1-691 ELPNGRHKIP ESQFPEFSTS LFSGPLEPVA CGSALSEESP LTEHEESSPS ENSP00000377262/1-699 ELPNGRHKIP ESQFPEFSTS LFSGSLEPVA CGSVLSEGSP LTEQEESSPS BACU006875/1-516 ELPNGRHKIP ESQFPEFSTS LFSGPLEPVA CGSALSEGSP LTEHEESSPS ENSBTAP00000053405/1-687 ELPNGRHKIP ESQFPEFSTS LFSGPLEPVA CGSALSEGSP LTEHEESSPS 501 550 bmy_10590T0/1-541 HDRSRTVSAS STGDLPKTKT RAADLLVNPL DPRNADKIRV KIADLGNACW ENSTTRP00000001390/1-691 HDRSRTVSAS STGDLPKTKT RAADLLVNPL DPRNADKIRV KIADLGNACW ENSP00000377262/1-699 HDRSRTVSAS STGDLPKAKT RAADLLVNPL DPRNADKIRV KIADLGNACW BACU006875/1-516 HDRSRTVSAS STGDLPKTKT RAADLLVNPL DPRNADKIRV KIADLGNACW ENSBTAP00000053405/1-687 HDRSRTVSAS STGDLPKTKT RAADLLVNPL DPRNADKIRV KIADLGNACW 551 600 bmy_10590T0/1-541 VHKHFTEDIQ TRQYRSIEVL IGAGYSTPAD IWSTACMAFE LATGDYLFEP ENSTTRP00000001390/1-691 VHKHFTEDIQ TRQYRSIEVL IGAGYSTPAD IWSTACMXXX XXXXXXXXXX ENSP00000377262/1-699 VHKHFTEDIQ TRQYRSIEVL IGAGYSTPAD IWSTACMAFE LATGDYLFEP BACU006875/1-516 VHKHFTEDIQ TRQYRSIEVL IGAGYSTPAD IWSTACMAFE LATGDYLFEP ENSBTAP00000053405/1-687 VHKHFTEDIQ TRQYRSIEVL IGAGYSTPAD IWSTACMAFE LATGDYLFEP 601 650 bmy_10590T0/1-541 HSGEDYSRDE DHIAHIIELL GSIPRHFALS GKYSREFFNR RDHIALIIEL ENSTTRP00000001390/1-691 XXXXXXXXXX XHIAHIIELL GSIPRHFALS GKYSREFFNR RGELRHITKL ENSP00000377262/1-699 HSGEDYSRDE DHIAHIIELL GSIPRHFALS GKYSREFFNR RGELRHITKL BACU006875/1-516 HSGEDYSRDE ---------- ---------- ---------- -GELRHITKL ENSBTAP00000053405/1-687 HSGEDYSRDE DHIAHIIELL GSIPRHFALS GKYSREFFNR RGELRHITKL 651 700 bmy_10590T0/1-541 LGKVPRKYAM LGKYSKEF-F TRKGNGIYAT LIFSVI--LS QRRNCAFAFG ENSTTRP00000001390/1-691 -----KPWSL FDVLVEKYGW PHEDAAQFTD FLIPMLEMVP EKRASA---G ENSP00000377262/1-699 -----KPWSL FDVLVEKYGW PHEDAAQFTD FLIPMLEMVP EKRASA---G BACU006875/1-516 -----KPWSL FDVLVEKYGW PHEDAAQFTD FLIPMLEMVP EKRASA---G ENSBTAP00000053405/1-687 -----KPWSL FDVLVEKYGW PHEDAAQFTD FLIPMLEMVP EKRASA---G 701 750 bmy_10590T0/1-541 QWRKIWTYRW GSLLKKALKK ENSTTRP00000001390/1-691 E---CLRHPW -------LNS ENSP00000377262/1-699 E---CLRHPW -------LNS BACU006875/1-516 E---CLRHPW -------LNS ENSBTAP00000053405/1-687 E---CLRHPW -------LNS