KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:29 2014 Check: 00 .. Name: ENSP00000356470/1-900 Len: 925 Check: 3505 Weight: 1.00 Name: ENSBTAP00000053406/1-909 Len: 925 Check: 4674 Weight: 1.00 Name: ENSTTRP00000005598/1-905 Len: 925 Check: 3416 Weight: 1.00 Name: bmy_04389T0/1-863 Len: 925 Check: 9958 Weight: 1.00 Name: BACU019079/1-830 Len: 925 Check: 960 Weight: 1.00 // 1 50 ENSP00000356470/1-900 ---------- --MSSKESCG KKETSQRKDT TTSSPNFG-- ----EKDKKE ENSBTAP00000053406/1-909 ---------- --MSNKESCE KKETSRRKG- TTPSSNIEFY FCVMKKIYLS ENSTTRP00000005598/1-905 ---------- --MSSKESYG KKEKSLRKG- TAPSPNVD-- ----EEDKKE bmy_04389T0/1-863 MRSESSVSAL SKMSSKESCG RKEKSQRKG- TAPSPNVD-- ----EEDKKE BACU019079/1-830 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356470/1-900 RKTPASSTSS S-SIRSVSSE KRKLKSDHTD VLYYNIKRRQ GLKRLSVEID ENSBTAP00000053406/1-909 VKTRAASFLA L-SITSIPSE SEKLKSDLAD ILYCNMKRRQ ELKRLNVETD ENSTTRP00000005598/1-905 KKTSANSTSS PCSVISVSTE KRKLXXXXXX XXXXXXXXXX XXXXLNVETD bmy_04389T0/1-863 KKTSANFTSS ACSVISVSTE KRKLKSDHTD ILYCNIKRRQ ELKRLNVETD BACU019079/1-830 ---------- ---------- ---------- ---------- ----LNVETD 101 150 ENSP00000356470/1-900 TLRRRPKIGS SSQRPIKLKE ASYSNDNQII LQSPSSNGTK KDIHKCVDFK ENSBTAP00000053406/1-909 PPRKRPKIDS SSQGLVTLQE TSYSNNNQII SQSPSSNGTK KDISKCVDFQ ENSTTRP00000005598/1-905 TPRKRPKISS SSQGLVKLQE TSYSNDNQIT SQSPSSNGTK NGISKCVDFK bmy_04389T0/1-863 TPRKRPKISS SSQGLVKLQE TSYSNDNQII SQSPSSNGTK KGISKCVDFK BACU019079/1-830 TPRKRPKLSS SSQGLVKLQE TSYSNDNQII SQSPSSNGTK KGISKCVDFK 151 200 ENSP00000356470/1-900 PKDIKLTNAG SKLDHGIKSL SSPKIASDVK PKAEGQASEN KWSHLLVQRE ENSBTAP00000053406/1-909 VKDIKLANVK SKLDHGIKNF SCPKVAKDVK PKAEGQTSEK KSPHLLAQRE ENSTTRP00000005598/1-905 VKDIKLTNVK SELDHGIKNF SSPKIAKDVR PKAEGQASEK KWPHLLAQRK bmy_04389T0/1-863 VKDIKLTNVK SELDRGIKNF SSPKIAKDVR PKAEGQASEK KWPHLLAQRE BACU019079/1-830 VKDTKLTNVK SELDHGIKNF SSPKIAKDVR PKAEGQASEK KWPHLLAQRE 201 250 ENSP00000356470/1-900 KMKELKKGRN SKFRDNSEKC VLEKWKRNQF SQDYNSNKII KEPLGSRRQK ENSBTAP00000053406/1-909 KMKEFKKERS NKFRDSSEKC ASEKCKRIQL SQDCNSSKII KEPFESRRR- ENSTTRP00000005598/1-905 KMKELKKERY NKFRDSSEKY VLEKCKRIQF SQDYKSNKII KEPLESRRRM bmy_04389T0/1-863 KMKELKKERY KKFRDSSEKY VLEKCKRIQF SQDYKSNKII KEPLESRRRK BACU019079/1-830 KMKELKKERY KKFRDSSEKY VLEKCKRIQF SQDYKSNKII KEPLESRRRK 251 300 ENSP00000356470/1-900 ISFKIPIKSR DTLQKLVEEN VFNIDSNNSK TKQEEREYLE SSQVSLNVTR ENSBTAP00000053406/1-909 INFKILVKSR NTLQNLVQEN VFSSGSNKLK TKQEKKECPE GTQFSLKFTR ENSTTRP00000005598/1-905 INFKILGESC ETLQKLVEED VFSLDSNTLK TKQEKKECLE GSQFSLNLTR bmy_04389T0/1-863 INFKILGESC ETLQKLVEEN VFSLDSNKLK TKQEKKECLE GSQVSLNLTR BACU019079/1-830 INFKILGESR ETLQKLVEEN VFSLDSNKLK TKQEKKECLE GSQVSLNLTR 301 350 ENSP00000356470/1-900 QKTEHLLSDF TYKRTVHEWK RKHHYDHQES NDSHSRENLT QSFEAPCCSV ENSBTAP00000053406/1-909 HRSEYLFSDS TYKQTVHEWE GAYH-EHQEI NDISSGENLT QSFEAPCSSV ENSTTRP00000005598/1-905 HKSEHLFSDS TYKQTVREWE GKYH-EHQRS NDSSSSENLT KSFEAPCSSV bmy_04389T0/1-863 HKSEHLFSDS TYKQTVREWE GKYH-EHQRS NDSSSSEILT Q--------- BACU019079/1-830 HKSEHLFSDS TYKQTVREWE GKYH-EHQRS NDSSSSEILT QSFEAPCSSV 351 400 ENSP00000356470/1-900 SSESIQDADQ EMQIVEELHA ARVGKSVDLP -----GELMS MEIDL-EDDV ENSBTAP00000053406/1-909 SLESIQDTDQ EMQIVEELHA ARVGKSMDLP VVPPSGELMS MEIDVVEDDI ENSTTRP00000005598/1-905 SLESIQDTDQ EMQIVEELHA ARVGKSVDLT VVPPSGEFTS MEIDLVEDDV bmy_04389T0/1-863 ---------- -MQIVEELHA ARMGKSVDLP VVPPSGELTS MEIDLVEDDV BACU019079/1-830 SLESIQDTDQ EMQIVEELHA ARMGKSVDLP VVPPSGELTS MEIDLVEDDV 401 450 ENSP00000356470/1-900 HSSSANNTSD RKLLIVIDTN ILMNHLKFVR ILKTTEVPGF DKLVLIIPWV ENSBTAP00000053406/1-909 HSSAANAASD KKLLIVIDTN ILMNHLKFVR LLKTREIPGF DSLVLIIPWV ENSTTRP00000005598/1-905 HSSSANTASD KKLLIVVDTN ILMNHLKFVR ILKTTEISGF DRLVLIIPWV bmy_04389T0/1-863 HSSSANTASD KKLLIVVDTN ILMNHLKFVR ILKTTEIQGF DRLVLIIPWV BACU019079/1-830 HSSSANTASD KKLLIVVDTN ILMNHLKFVR ILKTTEIQGF DRLVLIIPWV 451 500 ENSP00000356470/1-900 VMQELDRMKE GKLLKRAQHK AIPAVHFIND SLKNQDRKLW GQSIQLASQK ENSBTAP00000053406/1-909 VVQELDRMKA GKLLKHAQHK AIPAVHFIND SLRNQDRKLW GQSIQLASQK ENSTTRP00000005598/1-905 VVQELDRMKA GKLLKRAQHK AIPAVHFIND SLKNQDRKLW GQSIQLASQK bmy_04389T0/1-863 VVQELDRMKA GKLLKRAKHK AIPAVHFIND SLKNQDRKLW GQSIQLASQK BACU019079/1-830 VVQELDRMKA GKLLKRAKHK AIPAVHFISD SLKNQDRKLW GQSIQLASQK 501 550 ENSP00000356470/1-900 HYGLSDENND DRVLKCCLQH QELFPCSFVI LCTDDRNLRN KGLISGVKSL ENSBTAP00000053406/1-909 LYGLSDENND DRVLKCCLQY QELFPCSLVI LCTDDRNLRN KGLISGVKSL ENSTTRP00000005598/1-905 LYGLSDENND DRVLKCCLQY QELFPCSLVI LCTDDRNLRN KGLISGVKSL bmy_04389T0/1-863 LYGLSDENND DRVLKCCLQY QELFPCSLVI LCTDDRNLRN KGLISGVKSL BACU019079/1-830 LYGLSDENND DRVLKCCLQY QELFPCSLVI LCTDDRNLRN KGLISGVKSL 551 600 ENSP00000356470/1-900 SKEELSAELL HLSLNTDVCH QPCIPKQQLK AETTPLKESY KEESTNSGLS ENSBTAP00000053406/1-909 SKEELSAELL NLSLNTDVCH QPCISKQQLK AETTPLEESY EEQSTNSGLP ENSTTRP00000005598/1-905 SKEELSAELL NLSLNTVVCH QPCISKQQLK AEATPLEKSC EEESTNSGLC bmy_04389T0/1-863 SKEELSAELL NLSLNTVVCH QPCISKQQLK AEATPLEKSC EEESTNSGLC BACU019079/1-830 SKEELSAELL NLSLNTVVCH QPCISKQQLK AEATPLEKSC EEESTNSGLC 601 650 ENSP00000356470/1-900 ILLESIVSDL EKSLGTGLSS ILETEMKIAF GNLWMEILYL KPPWTLLHLL ENSBTAP00000053406/1-909 LLLENIVSDL ERSLGTALSS ILETEMKIAF GNLWMEMLYV KPPWTLIHLL ENSTTRP00000005598/1-905 IPLESIVSDL EKSLGTALSS ILETEMKIAF GNLWMEVLYL KPPWTLIHLL bmy_04389T0/1-863 ILLESIVSDL KKSLGTALSS ILETEMKIAF GNLWMEVLYL KPPWTLIHLL BACU019079/1-830 VLLESIVSDL KKSLGTALSS ILETEMKIAF GNLWMEVLYL KPPWTLIHLL 651 700 ENSP00000356470/1-900 QCFKKHWLAV FGLVMEKNLL LTIESLYKNL RKANKAVDFT TVKFLLQDSR ENSBTAP00000053406/1-909 QCFRKHWLAV FGLVMEKNLL LTIESLYENV RKAKKAVDFT TVKFLLQDSE ENSTTRP00000005598/1-905 QCFRKHWLAV XXXXXXXXXX XXXXXXXXXX XXXNNAVDFT TAKLLLQDSK bmy_04389T0/1-863 QCFRKHWLAV FGLVMEKNLL LTVESLYENL SKANNAVDFT TVKFLLQDSE BACU019079/1-830 QCFRKHWLAV FGLVMEKNLL LTVESLYENL SKANNAVDFT TVKFLLQDSE 701 750 ENSP00000356470/1-900 SLLHAFSTRS NYDGILPQTF AQVNNLLQTF AEVKTKLKPN SSENTVTKKQ ENSBTAP00000053406/1-909 SLLHAFSTRS NYDGILPQAF VQVNKLLQTF AEGKAKLKQN SSKNTPGKSQ ENSTTRP00000005598/1-905 SLLHAFSTRS NYDGILPQAF AQVNKLLQTF IEVKAKLKQN PSKNTAGKRQ bmy_04389T0/1-863 SLLHAFSTRS NYDGILPQAF AQVNKLLQTF IEVKAKLKQN PSKNTAGKRQ BACU019079/1-830 SLLHAFSTRS NYDGILPQAF AQVNNLLQTF IEVKAKLKQN PSKNAAGKRQ 751 800 ENSP00000356470/1-900 EGTSLKNSHN QEITVFSSSH LPQPSRHQEI WSILESVWIT IYQNSTDVFQ ENSBTAP00000053406/1-909 EDNSLMKSDN QEITVFSSSY PPQPSRHQEI WSVLENVWIT LYQNSMDVFQ ENSTTRP00000005598/1-905 EDNSLMKSNN QEITISSGSH LPQPNRHQEI WSILENVWIT IYQNSMDVFQ bmy_04389T0/1-863 EDNSLMKSNN QEITVFSGSH LPQPNRHQEI WSILENVWIT IYQNSMDVFQ BACU019079/1-830 EDNSLMKSNN QEITVFSGSH LPQPNRHQEI WSILENVWIT IYQNSMDVFQ 801 850 ENSP00000356470/1-900 RLGSNSALTT SNIASFEEAF ICLQKLMAAV RDILEGIQRI LAPNSNYQDV ENSBTAP00000053406/1-909 RLDSNSTLTS SKIASFEEAF VYLQKLMAAV KDILEGIQRI LAPNSNYQDI ENSTTRP00000005598/1-905 RLGSNSALMS SKIASFEEAF VYLQKLMEAV KVILEGIQRI LAPSSNYQDV bmy_04389T0/1-863 RLGSNSALMS SKIASFEEAF VYLQKLMEAV KDILEGIQRI LAPNSSYQDV BACU019079/1-830 RLGSNSALMS SKIASFEEAF VYLQKLMEAV KDILEGIQRI LAPNSNYQDV 851 900 ENSP00000356470/1-900 ETLYNFLIKY EVNKNVKFTA QEIYDCVSQT EYREKLTIGC RQLVEMEYTM ENSBTAP00000053406/1-909 ETLYNFLIKY EVNKNVKFTA QELYDCVSQA EYREKLTIGC RQLTEMEYTM ENSTTRP00000005598/1-905 ETLYNFLIKY EVNKNVKFTA QELYDCVSQA EYREKLTIGC RQLVEMEHTM bmy_04389T0/1-863 ETLYNFLIKY EVNKNVKFTA QELYDCVSQA EYRGE---GC KG-------- BACU019079/1-830 ETLYNFLIKY EVNKNVKFTA QELYDCVSQA EYREKLAIGC RQLVEMEHTM 901 950 ENSP00000356470/1-900 QQCNASVYME AKNRGWCEDM LNYRI ENSBTAP00000053406/1-909 QQCNASVYME ARNRGWCEDM LDDRT ENSTTRP00000005598/1-905 QQCNASVYME AKNRGWCEDM LNYRT bmy_04389T0/1-863 ---------- ---------- ---RA BACU019079/1-830 QQCNASVYTE AKNRGWCGDM LNYRT