KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 18:04:39 2014 Check: 00 .. Name: bmy_18474T0/1-1004 Len: 1319 Check: 6434 Weight: 1.00 Name: BACU007779/1-350 Len: 1319 Check: 8119 Weight: 1.00 Name: ENSTTRP00000012951/1-1306 Len: 1319 Check: 754 Weight: 1.00 Name: ENSBTAP00000053415/1-1305 Len: 1319 Check: 5567 Weight: 1.00 // 1 50 bmy_18474T0/1-1004 -----SGATR PAELLQ-SEY RSSRTGLKTS QPWTQRVDKR PDKDSLVVAS BACU007779/1-350 MPEDFLPRTK EFGYES-VHE EKSSQVLKLG HGWDRRRI-- ---------- ENSTTRP00000012951/1-1306 --MDLFDFFR DWDLEQQCHY EQDRSALKKR E-WERRNQEV QQEDDLFSSG ENSBTAP00000053415/1-1305 --MDLFDFFR DWDLEQQCHY EQDRNALKKR E-WERRNQEV QQEDDLFSSG 51 100 bmy_18474T0/1-1004 LPV------- ------GDRM LEDDLKLSSD EDDLEPVKTL TTQCTATELY BACU007779/1-350 VKMMLEVWRV ---TNKGDAL AN---RVQST LGNYDEMKDL LTNHSNQNHL ENSTTRP00000012951/1-1306 FDLFGEPYKV AEYTNKGDAL AN---RVQNT LGNYDEMKDL LTNHSNQNHL ENSBTAP00000053415/1-1305 FDLFGEPYKV AEYTNKGDAL AN---RVQNT LGNYDEMKDL LTNHSNQNHL 101 150 bmy_18474T0/1-1004 QAVEKAKSKN NPVK------ ---------- ---------- ---------- BACU007779/1-350 VGIPKNSVPQ TPINKNEPSF FPEQKNRMIP PH-QDSTHSS APMPPPSVVI ENSTTRP00000012951/1-1306 VGIPKNSVPQ TPINKNESSF FPEQKNRMIP PH-QDSTHSS APMPPPSVVI ENSBTAP00000053415/1-1305 VGIPKNSMPQ TPTNKNEPSF FPEQKHRMVP VHQQDNTHSS APMPPPSVVI 151 200 bmy_18474T0/1-1004 ---------- -----WSVNT KN-------- ---RDDKMET ESTQ------ BACU007779/1-350 LNSTLIHSNR KSKPDWPRDS QNTSIVPASQ AGSQPNKMQP STQDQPPARL ENSTTRP00000012951/1-1306 LNSTLIHSNR KSKPDWPRDS QNTSMVPASQ AGSQPNKTQP PTQDQPPARL ENSBTAP00000053415/1-1305 LNSTLIHSNR KSKPDWSRDS QNTSIVAASQ VTSQPNKMQP PTPDQPPARL 201 250 bmy_18474T0/1-1004 -----LLVQQ SSLKRASKGT VPLRKDS--- ---------- LATSKPDKSI BACU007779/1-350 EDFFVYPAEQ PQVGAVEESN PPAKEDNNLK SSGGDTFKEI FQSNSPEESE ENSTTRP00000012951/1-1306 EDFFVYPAEQ PQVGAAEESN PSAKEDGNLK SGGGDTFKEI FQSSSPEESE ENSBTAP00000053415/1-1305 EDFFVYPAEQ PQVGAVEESN PLAKEDNTLK SSGGDTFKEI YQSNSPEAAE 251 300 bmy_18474T0/1-1004 Y--------L VSSEM----- ---------- ---------- ---------- BACU007779/1-350 FTLQAPGSPL VASSLLAPSS GLSVQNFPPG VYCKTSVGQQ KPTAYVRPMD ENSTTRP00000012951/1-1306 FTLQAPGSPL VASSLLAPSS GLVVQNFPPG VYCKTSVGQQ KPTAYVRPMD ENSBTAP00000053415/1-1305 FTVQAPGSPL VASSLLAPSS GLSVQNFPPG LYCKTSMGQQ KPTAYVRPMD 301 350 bmy_18474T0/1-1004 ---------- ---------K RWCHFPFSLL L--------- ---------- BACU007779/1-350 GQDQAPDISP TLKPSIEFEN SFGHLSFGSL LDGKPSAPGS KTKLPKFTIL ENSTTRP00000012951/1-1306 GQDQAPDISP TLKPSIEFEN SFGNLSFGSL LDGKPSAPSS KTKLPKFTIL ENSBTAP00000053415/1-1305 GQDQAPDISP TLKPSIEFDN SFGNLSFGSL LDGKPSAPSS KTKQPKFTIL 351 400 bmy_18474T0/1-1004 ---------- ---------- ---------- ---------- ---------- BACU007779/1-350 QTSE------ ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 QTSEVSLPSD PSCVEEILRE MTHPWPTPLT AMHTSGNSEQ STFSIPGQGS ENSBTAP00000053415/1-1305 QTSEVSLPSD PSCVEEILRE MTHPWPTPLT AMHTPGNSEQ STLSIPGQES 401 450 bmy_18474T0/1-1004 ---------- ---------- ---------- ---------- ---------- BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 HHLS-GSALQ KWSDPTSRAS TKV---PFKS MLEDDLKLSS DEDDLEPVKT ENSBTAP00000053415/1-1305 QHLTPGFALQ --SKCFEKNA TGVFFFFFCR MLEDDLKLSS DEDDLEPMKT 451 500 bmy_18474T0/1-1004 ---------- ---------- --------AT PQPTPAAPAS GGSGSSSDSE BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 LTTQCTATEL YQAVEKAKSK NNPVTPLLAT PQPTPAAPAS GGSGSSSDSE ENSBTAP00000053415/1-1305 LTTQCTATEL YQAVEKAKPK NNPVNPLLAT PQPPPAAPTS GGSGSSSDSE 501 550 bmy_18474T0/1-1004 SSSESDSDTE SSTTDSEANE APRVATPEPE PPSTNKWQLD KWLNKVTSQN BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 SSSESDSDTE SSTTDSEANE APRVATPEPE PPSTNKWQLD KWLNKVTSQN ENSBTAP00000053415/1-1305 SSSESDSDTE SSTTDSEANE APRVTTPEPE PPSTNKWQLD KWLNKVTSQN 551 600 bmy_18474T0/1-1004 KSFICGQNET PMETISVPPP IIQPMEVQVK VKANPSQVLA EPKERPLLSL BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 KSFICGQNET PMETISVPPP IIQPMEVQVK VKPNPSQVLA EPKERPLLSL ENSBTAP00000053415/1-1305 KSFICGQNET PMETISVPPP VIQPMEVQVK VKANPSQVLP EPKERPLLGL 601 650 bmy_18474T0/1-1004 IREKARPRPT PKIPETKALK HKLSTTLETA PQRTIGKKQP KRVEKNPSIE BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 IREKARPRPT PKIPETKALK HKLSTTLETA SQRTIGKKQP KRVEKNPSIE ENSBTAP00000053415/1-1305 IREKARPRPT LKTPETKALK HKLSTTVETA SQRTIGKKQP KRVEKNTSVE 651 700 bmy_18474T0/1-1004 EFTWPKPNIT SSTPKEKESM ELPDPPRGRN KATAHKPVPR KEPRPSIPLA BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 EFTWPKPNIS SSTPKEKESM ELPEPPRGRN KAAAHKPVPR KEPRPSIPLA ENSBTAP00000053415/1-1305 EFTWPKPNIT SSTPKEKESG ELPDLPRGRS KAVAHKPVPR KEPRASIPLA 701 750 bmy_18474T0/1-1004 AEKKKYRGPG KIVPKSREFI ETDSSTSDSN TDQEETLQIK VLPPCMAPGG BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 AEKKKYRGPG KIVPKSREFI ETDSSTSDSN TDQEETLQIK VLPPCMAPGG ENSBTAP00000053415/1-1305 PEKKKYRGPG KTVPKSREFI ETDSSTSDSN TDQEEPLQIK VLPPCMAPGG 751 800 bmy_18474T0/1-1004 NTAKSKDTCG ASLTLSTL-S SSSGSNPPVP TEEPAFSPIP VTQTELLSPL BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 NTAKSKDTCG PSLTLSTF-- SSSNXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053415/1-1305 NTTKSKEAGG ASLTLSSFLS SGNGNNPPVP SEEPTQSPVP VTQTEVLSPV 801 850 bmy_18474T0/1-1004 RDHENLKNLW VKIDLDLLSR VPGHNSLQAA PAKPDHKETA SKPRRQAAAA BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053415/1-1305 RDQENLKNLW VKIDLDLLSR VPGQNSLQAT SAKLDHKETA SKPKRQTAAV 851 900 bmy_18474T0/1-1004 AADKPAPKGK RKHKPTEVAE KIPEKKQRLE EAATICLLPP CISPAPPQKP BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 XXXXXXXXXX XXXXPTEVAE KIPEKKQRQE EAATICLLPP CISPAPPQKP ENSBTAP00000053415/1-1305 PAEKAAPKGK RKHKPTEVAG KIPEKKQRLE EAATICLLPP CISPAPPQKP 901 950 bmy_18474T0/1-1004 PSTKENNSSR RANRRKEEKL FPPPLSPLPE DPPRRRNISG NNGPFSQDKT BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 PSTKENNSSR RANRRKEEKL FPPPLSPLPE DPPRRRNISG NSGPFSQDKT ENSBTAP00000053415/1-1305 PSTKENNSSR RANRRKEEKL FPPPLSPLPE DPPRRRNISG NNGPFSRDKT 951 1000 bmy_18474T0/1-1004 IPMIGQITST KPKRSEGKFC ATFKGISVNE GDTPKKAASA TVTVTNTALA BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 IPMIGQITST KPKRSEGKFC ATFKGISVSE GDTPKKAASA TVTVTNTAIA ENSBTAP00000053415/1-1305 IPLIGQITST KPKRNEGKFC ATFKGIAVNE GDTPKKAAPG --TVTNTAIA 1001 1050 bmy_18474T0/1-1004 TATVTATAIV TATVTATATA TATTTTTTTT ISTITSTITT GLMDSSHLEM BACU007779/1-350 ---------- ---------- ---------- ----TQAVYT GHL----LIM ENSTTRP00000012951/1-1306 TATVTATATV TATVTATATA TATTTTTTTT ISTITSTITT GLMDSNHLEM ENSBTAP00000053415/1-1305 ----SATATA IVTSTATATA TATTTTTTTT ISTTTSAITT GLMDSSHLEM 1051 1100 bmy_18474T0/1-1004 TSWAALPVLS SSTTNVRRPK LTFDDSVHNA DYYMQEAKKL KHKADALFEK BACU007779/1-350 ESWG------ ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 TSWAALPVLS SSTTNVRRPK LTFDDSVHNA DYYMQEAKKL KHKADALLEK ENSBTAP00000053415/1-1305 TSWAALPLLS TSTTNVRRPK LTFDDSVHNA DYYMQEAKKL KHKADALFEK 1101 1150 bmy_18474T0/1-1004 FGKAVNYADA ALSFTECGNA MERDPLEAKS PYTMYSETVE LLRYAMRLKN BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 FGKAVNYADA ALSFTECGNA MERDPLEAKS PYTMYSETVE LLRYAMRLKN ENSBTAP00000053415/1-1305 FGKAVNYADA ALSFTECGNA MERDPLEAKS PYTMYSETVE LLRYAMRLKN 1151 1200 bmy_18474T0/1-1004 FASPLASDGD KKLAVLCYRC LSLLYLRMFK LKKDHAMKYS RSLMEYFKQN BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 FASPLASDGE KKLAVLCYRC LSLLYLRMFK LKKDHAMKYS RSLMEYFKQN ENSBTAP00000053415/1-1305 FASPLASDGD KKLAVLCYRC LSLLYLRMFK LKKDHAMKYS RSLMEYFKQN 1201 1250 bmy_18474T0/1-1004 ASKVAQIPSP WVGNGKNTPS PVSLNNVSPI NAMGNCNNGP VTIPQRIHHM BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 ASKVAQIPSP WVGNGKNTPS PVSLNNVSPI NAMGNCNNGP VTIPQRIHHM ENSBTAP00000053415/1-1305 ASKVAQIPSP WVGNGKNTPS PVSLNNVSPI NTMGNCNNGP VTIPQRIHHM 1251 1300 bmy_18474T0/1-1004 AASHVNITSN VLRGYEHWDM ADKLTRENKE FFGDLDTLMG PLTQHSSMTN BACU007779/1-350 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012951/1-1306 AASHVNITSN VLRGYEHWDM ADKLTRENKE FFGDLDTLMG PLTQHSSMTN ENSBTAP00000053415/1-1305 AASHVNITSN VLRGYEHWDM ADKLTRENKE FFGDLDTLMG PLTQHSSMTN 1301 1350 bmy_18474T0/1-1004 LVRYVRQGLC WLRIDAHLL BACU007779/1-350 ---------- --------- ENSTTRP00000012951/1-1306 LVRYVRQGLC WLRIDAHLL ENSBTAP00000053415/1-1305 LVRYVRQGLC WLRIDAHLL