KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:40 2014 Check: 00 .. Name: bmy_22010T0/1-461 Len: 816 Check: 2952 Weight: 1.00 Name: ENSTTRP00000001616/1-793 Len: 816 Check: 1603 Weight: 1.00 Name: ENSP00000391227/1-801 Len: 816 Check: 9196 Weight: 1.00 Name: BACU011552/1-807 Len: 816 Check: 8030 Weight: 1.00 Name: ENSBTAP00000053419/1-792 Len: 816 Check: 6829 Weight: 1.00 // 1 50 bmy_22010T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001616/1-793 ---------T MITVNPDGKI M---VRRCVV TLRPFRLFVL GIGFFSLCFL ENSP00000391227/1-801 MHSFVKHLCS RYVVERQGTM ALPALLTRLL PLR--RLFVL GIGFFTLCFL BACU011552/1-807 MDSASSLALL PFGSCPCGSF ----RLFSES RMQ--RLFVL GIGFFSLCFL ENSBTAP00000053419/1-792 -----SFVGS PYG---IGVH ----VLTCPI ALR--RLFVL GIGFFSLCFL 51 100 bmy_22010T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001616/1-793 MTSLGGQFSA RRPGDSPFTV RTEVMGGPES RGVLRKMSDL LELMLRRMDT ENSP00000391227/1-801 MTSLGGQFSA RRLGDSPFTI RTEVMGGPES RGVLRKMSDL LELMVKRMDA BACU011552/1-807 MTSLGGQFSA RRPGDSPFTV RTEVMGGPES RGVLRKMSDL LELMVKRMDT ENSBTAP00000053419/1-792 MTSLGGQFSA RRPGDSPFTI RTEVMGGPES RGVLRKMSDL LELMVKRMDT 101 150 bmy_22010T0/1-461 ---MERAEEL Q--------- --------GV LEGNKA---- ---------- ENSTTRP00000001616/1-793 LARLENSSEL HRAAGDRRFP VDRLPPGAGL MERIQAIAQN VSDIAVKVDQ ENSP00000391227/1-801 LARLENSSEL HRAGGDLHFP ADRMPPGAGL MERIQAIAQN VSDIAVKVDQ BACU011552/1-807 LARLENSSEL HRAAGDRHFP VDRLPPGAGL MERIQAIAQN VSDIAVKVDQ ENSBTAP00000053419/1-792 LARLENSSEL HRAAGEGRFA LDRLPAGPGL MERIQAIAQN VSDIAVKVDQ 151 200 bmy_22010T0/1-461 ---------- ----GKKK-- ---------- ---------- ---------- ENSTTRP00000001616/1-793 ILRHSLLLHG KVSEGRRDQC EAPSDPKFPD CSGKVEXXXX XXXXXXXXXX ENSP00000391227/1-801 ILRHSLLLHS KVSEGRRDQC EAPSDPKFPD CSGKVEWMRA RWTSDPCYAF BACU011552/1-807 ILRHSLLLHS KVSEGRRDQC EAPSDPKFPD CSGKVEWMRA RWTSDPCYAF ENSBTAP00000053419/1-792 ILRHSLLLHS KVSEGRRDQC DAPSDPKFPD CSGKVEWMRA RWTSDPCYAF 201 250 bmy_22010T0/1-461 --VTGSVITF IINA------ CSPC------ ---------- ---------- ENSTTRP00000001616/1-793 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXAVFRSNL ENSP00000391227/1-801 FGVDGTECSF LIYLSEVEWF CPPLPWRNQT AAQRAPKPLP KVQAVFRSNL BACU011552/1-807 FGVDGTECSF LIYLSEVEWF CPPLPWRNQT ATQRARKPLP KVQAVFRSNL ENSBTAP00000053419/1-792 FGVDGTECSF LIYLSEVEWF CPPLPWRNQT ATRRAPKPLP KVQAVFRSNL 251 300 bmy_22010T0/1-461 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001616/1-793 SHLLELMGSG KESLIFMKKR TKRLTAQWAL AAQRLAQKLG GARRDQKQVL ENSP00000391227/1-801 SHLLDLMGSG KESLIFMKKR TKRLTAQWAL AAQRLAQKLG ATQRDQKQIL BACU011552/1-807 SHLLELMGSG KESLIFMKKR TKRLTAQWAL AAQRLAQKLG GVRRDQKQIL ENSBTAP00000053419/1-792 SHLLELMGSG KESLIFMKKR TKRFTAQWAL AAQRLAQKLG GVRRDQKQIL 301 350 bmy_22010T0/1-461 ---------T GGLFLP---- SPPL------ ---------- ---------- ENSTTRP00000001616/1-793 VHIGFLTEES GDVFSPRVLK GGPLGEMVQW ADILAALYVL GHGLRVTVSL ENSP00000391227/1-801 VHIGFLTEES GDVFSPRVLK GGPLGEMVQW ADILTALYVL GHGLRVTVSL BACU011552/1-807 VHIGFLTEES GDVFSPRVLK GGPLGEMVQW ADILAALYVL GHGLRITVSL ENSBTAP00000053419/1-792 VHIGFLTEES GDVFSPRVLK GGPLGEMVQW ADILAALYVL GHGLRITVSL 351 400 bmy_22010T0/1-461 ---------- ---------- PGEECRP--- ---------- -----QQSGQ ENSTTRP00000001616/1-793 KELQ------ ----SNLGVP PGRGNCPLTM PLPFDLIYTD YHGLQQMKQH ENSP00000391227/1-801 KELQ------ ----SNLGVP PGRGSCPLTM PLPFDLIYTD YHGLQQMKRH BACU011552/1-807 KELQRAQTLK GSSLSNLGVP PGRGNCPLTM PLPFDLIYTD YHGLQQMKQH ENSBTAP00000053419/1-792 KELQ------ ----SNLGVP PGRGNCPLTM PLPFDLIYTD YHGLQQMKQH 401 450 bmy_22010T0/1-461 FWVTGKDSGC RIRVIDTFGT EPAYNHEEYA TLHGYRTNWG YWNLNPKQFM ENSTTRP00000001616/1-793 MGLSFKKYRC RIRVIDTFGT EPAYNHEEYA TLHGYRTNWG YWNLNPKQFM ENSP00000391227/1-801 MGLSFKKYRC RIRVIDTFGT EPAYNHEEYA TLHGYRTNWG YWNLNPKQFM BACU011552/1-807 MGLSFKKYRC RIRVIDTFGT EPAYNHEEYA TLHGYRTNWG YWNLNPKQFM ENSBTAP00000053419/1-792 MGLSFRKYRC RIRVIDTFGT EPAYNHEEYA TLHGYRTNWG YWNLNPKQFM 451 500 bmy_22010T0/1-461 TMFPHTPDNS FMGFVSEELN ETEKQLIKGG KASNMAVVYG KEASIWK--- ENSTTRP00000001616/1-793 TMFPHTPDNS FMGFVSEELN ETEKQLIKGG KASNMAVVYG KEASIWK-XX ENSP00000391227/1-801 TMFPHTPDNS FMGFVSEELN ETEKRLIKGG KASNMAVVYG KEASIWK--- BACU011552/1-807 TMFPHTPDNS FMGFVSEELN ETEKRLIKGG KASNMAVVYG KEASIWK--- ENSBTAP00000053419/1-792 TMFPHTPDNS FMGFVSEELN ETEKQLIKDG KASKMAVVYG KEASIWKKIY 501 550 bmy_22010T0/1-461 ---------- -YMEIHGTVY YESQRPPEVP AFVKNHGLLP QPEFQQLLRK ENSTTRP00000001616/1-793 GKEKFLSILN KYMEIHGTVY YESQRPPEVP AFVKNHGLLP QPEFQQLLRK ENSP00000391227/1-801 GKEKFLGILN KYMEIHGTVY YESQRPPEVP AFVKNHGLLP QPEFQQLLRK BACU011552/1-807 GKEKFLSILN KYMEIHGTVY YESQRPPEVP AFVKNHGLLP QPEFQQLLRK ENSBTAP00000053419/1-792 GKEKFLSILN KYMEIHGTVY YESQRPPEVP AFVKNHGLLP QPEFQQLLRK 551 600 bmy_22010T0/1-461 AKLFIGFGFP YEGPAPLEAI ANGCIFLQSR FSPPHSSLNH EFFRGKPTSR ENSTTRP00000001616/1-793 AKLFIGFGFP YEGPAPLEAI ANGCVFLQSR FSPPHSSLNH EFFRGKPTSR ENSP00000391227/1-801 AKLFIGFGFP YEGPAPLEAI ANGCIFLQSR FSPPHSSLNH EFFRGKPTSR BACU011552/1-807 AKLFIGFGFP YEGPAPLEAI ANGCVFLQSR FSPPHSSLNH EFFRGKPTSR ENSBTAP00000053419/1-792 AKLFIGFGFP YEGPAPLEAI ANGCVFLQSR FSPPHSSLNH EFFRGKPTSR 601 650 bmy_22010T0/1-461 EVFSQHPYAE NFIGKPHVWT VDYNNSEALE EAIKAIMRTQ VDPYLPYEYT ENSTTRP00000001616/1-793 EVFSQHPYAE SFIGKPHVWT VDYNNSEELE AAIKTIVRTQ VDPYLPYEYT ENSP00000391227/1-801 EVFSQHPYAE NFIGKPHVWT VDYNNSEEFE AAIKAIMRTQ VDPYLPYEYT BACU011552/1-807 EVFSQHPYAE KFIGKPHVWT VNYNNSEELE AAIKAIMRTQ VDPYLPYEYT ENSBTAP00000053419/1-792 EVFSQHPYAE NFIGKPHVWT VDYNNSEEFE AAIQAIMTTQ VDPYLPYEYT 651 700 bmy_22010T0/1-461 CEGMLERVHA YIQHQDFCAA PGPAPAGAQA PESPFILAPN ATHLKWARNA ENSTTRP00000001616/1-793 CEGMLERVHA YIQHQDFCAA PGPAPAGARA PESPFILAPN ATHLKWARNA ENSP00000391227/1-801 CEGMLERIHA YIQHQDFCRA PDPALPEAHA PQSPFVLAPN ATHLEWARNT BACU011552/1-807 CEGMLERVHA YIQHQDFCAA PGPGPPGARA LESPFILAPN ATHLKWARNA ENSBTAP00000053419/1-792 CEGMLERIHA YIQHQDFCAA PGPAPPGTRA PQSPFILAPN ATHLEWARNA 701 750 bmy_22010T0/1-461 SLAPGAWPPA HSLRAWLAAA GRACTDACLD HGLICEPSFF PFLNSQDAFQ ENSTTRP00000001616/1-793 SLAPGAWPPA HSLRAWLAAA GRACTDACLD HGLICEPSFF PFLNSQDAFQ ENSP00000391227/1-801 SLAPGAWPPA HALRAWLAVP GRACTDTCLD HGLICEPSFF PFLNSQDAFL BACU011552/1-807 SLAPGAWPPA HSLRAWLAAA GRACTDACLD HGLICEPSFF PFLNSQDAFQ ENSBTAP00000053419/1-792 SLAPGAWPPA HSLRAWLAAA GRACTDACLD HGLICEPSFF PFLNSQDAFQ 751 800 bmy_22010T0/1-461 TLQVPCDGTE SEMNHLYPAF AQPGHECFLQ KEPLLFSCAG SSTKYRRLCP ENSTTRP00000001616/1-793 TLQVPCDGTE SEMNHLYPAF AQPGQECFLQ KEPLLFSCAG SSSKYRRLCP ENSP00000391227/1-801 KLQVPCDSTE SEMNHLYPAF AQPGQECYLQ KEPLLFSCAG SNTKYRRLCP BACU011552/1-807 TLQVPCDGTE SEMNHLYPAF AQPGQECFLQ KEPLLFSCAG SSTKYRRLCP ENSBTAP00000053419/1-792 KLQVPCDGIE SEMNHLYPAF AQPGQECFLQ KEPLLFSCAG SSTKYRRLCP 801 850 bmy_22010T0/1-461 CRDFRKGQVA LCQDCL ENSTTRP00000001616/1-793 CRDFRKGQVA LCQDCL ENSP00000391227/1-801 CRDFRKGQVA LCQGCL BACU011552/1-807 CRDFRKGQVA LCQDCL ENSBTAP00000053419/1-792 CRDFRKGQVA LCQDCL