KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:42 2014 Check: 00 .. Name: BACU014490/1-850 Len: 969 Check: 7808 Weight: 1.00 Name: ENSP00000340913/1-931 Len: 969 Check: 6947 Weight: 1.00 Name: bmy_07914T0/1-944 Len: 969 Check: 3328 Weight: 1.00 Name: ENSTTRP00000001748/1-930 Len: 969 Check: 1263 Weight: 1.00 Name: ENSBTAP00000053428/1-875 Len: 969 Check: 4957 Weight: 1.00 // 1 50 BACU014490/1-850 MNQSSAFGPG RGGSPGVATP ARARRNESQD YLLMDSELGD NGCPQPPLPP ENSP00000340913/1-931 MSQSPAFGPR RGSSPRGAAG AAARRNESQD YLLMDSELGE DGCPQAPLPC bmy_07914T0/1-944 MNQSSAFGPG RGGSPGVATP ARARRNESQD YLLMDSELGD DGCPQPPLPP ENSTTRP00000001748/1-930 MNQSSAFGPG RGGSPGVATR ARARRNESQD YLLMXXXXXX XXXXXXXXXX ENSBTAP00000053428/1-875 ---------- ---------- ---------- ---------- ---------- 51 100 BACU014490/1-850 YGYYPCF--- ---------- ---------- ---------- ----RGTDNR ENSP00000340913/1-931 YGYYPCF--- ---------- ---------- ---------- ----RGSDNR bmy_07914T0/1-944 YGYYPCLPGH LFLTLNVQVE SGVKKQSHEQ QKSGQMPGQM LQFCRGTDNR ENSTTRP00000001748/1-930 XXXXXXX--- ---------- ---------- ---------- ----RGTDNR ENSBTAP00000053428/1-875 ---------- ---------- ---------- ---------- ----RGTDSR 101 150 BACU014490/1-850 LTHRRQTVLR EKGRRLANRG PAYMFNDHST NLSIEEERFL DAAEYGNIPV ENSP00000340913/1-931 LAHRRQTVLR EKGRRLANRG PAYMFSDRST SLSIEEERFL DAAEYGNIPV bmy_07914T0/1-944 LTHRRQTVLR EKGRRLANRG PAYMFNDHST NLSIEEERFL DAAEYGNIPV ENSTTRP00000001748/1-930 LTHRRQTVLR EKGRRLANRG PAYMFNDHST NLSIEEERFL DAAEYGNIPV ENSBTAP00000053428/1-875 LTHRRQTVLR EKGRRLANRG PAYMFNDHST SLSIEEERFL DAAEYGNIPV 151 200 BACU014490/1-850 VRKMLEECLS LNVNCVDYMG QNALQLAVAN EHLEITELLL KKENLSRVGD ENSP00000340913/1-931 VRKMLEECHS LNVNCVDYMG QNALQLAVAN EHLEITELLL KKENLSRVGD bmy_07914T0/1-944 VRKMLEECLS LNVNCVDYMG QNALQLAVAN EHLEITELLL KKENLSRVGD ENSTTRP00000001748/1-930 VRKMLEECLS LNVNCVDYMG QNALQLAVAN EHLEITELLL KKENLSRVGD ENSBTAP00000053428/1-875 VRKMLEECLS LNVNCVDYMG QNALQLAVAN EHLEITELLL KKENLSRVGD 201 250 BACU014490/1-850 ALLLAISKGY VRIVEAILSH PAFAEGKRLA TSPSQSELQQ DDFYAYDEDG ENSP00000340913/1-931 ALLLAISKGY VRIVEAILSH PAFAEGKRLA TSPSQSELQQ DDFYAYDEDG bmy_07914T0/1-944 ALLLAISKGY VRIVEAILSH PAFAEGKQLA TSPSQSELQQ DDFYAYDEDG ENSTTRP00000001748/1-930 ALHLAISKGY VRIVEAIFSH PAFAEGKRLA TSPSQSELQQ DDFYAYDEDG ENSBTAP00000053428/1-875 ALLLAISKGY VRIVEAILSH PAFAEGKRLA TSPSQSELQQ DDFYAYDEDG 251 300 BACU014490/1-850 TRFSHDVTPI VLAAHCQEYE IVHTLLRKGA RIERPHDYFC KCSECNQKQK ENSP00000340913/1-931 TRFSHDVTPI ILAAHCQEYE IVHTLLRKGA RIERPHDYFC KCNDCNQKQK bmy_07914T0/1-944 TRFSHDVTPI VLAAHCQEYE IVHTLLRKGA RIERPHDYFC KCSECNQKQK ENSTTRP00000001748/1-930 TRFSHDVT-I VLAAHCQEYE IVHTLLRKGA RIERPHDYFC KCSECNQKQK ENSBTAP00000053428/1-875 TRFSHDVTPI ILAAHCQEYE IVHTLLRKGA RIERPHDYFC KCSECNQKQK 301 350 BACU014490/1-850 HDSFSHSRSR INAYKGLASP AYLSLSSEDP VMTALELSNE LAVLANIEKE ENSP00000340913/1-931 HDSFSHSRSR INAYKGLASP AYLSLSSEDP VMTALELSNE LAVLANIEKE bmy_07914T0/1-944 HDSFSHSRSR INAYKGLASP AYLSLSSEDP VMTALELSNE LAVLANIEKE ENSTTRP00000001748/1-930 HDSFSHSRSR INAYKGLASP AYLSLSSEDP VMTALELSNE LAVLANIEKE ENSBTAP00000053428/1-875 HDSFSHSRSR INAYKGLASP AYLSLSSEDP VMTALELSNE LAVLANIEKE 351 400 BACU014490/1-850 FKNDYKKLSM QCKDFVVGLL DLCRNTEEVE AILNGDVEIH HSGGDHGRPN ENSP00000340913/1-931 FKNDYKKLSM QCKDFVVGLL DLCRNTEEVE AILNGDVETL QS-GDHGRPN bmy_07914T0/1-944 FKNDYKKLSM QCKDFVVGLL DLCRNTEEVE AILNGDVEIH HSGGDHGRPN ENSTTRP00000001748/1-930 FKNDYKKLSM QCKDFVVGLL DLCRNTEEVE AILNGDVEIH HSGGDHGRPN ENSBTAP00000053428/1-875 FKNDYKKLSM QCKDFVVGLL DLCRNTEEVE AILNGDVEIH HSGGDHYRPN 401 450 BACU014490/1-850 LSRLKLAIKY DVKKFVAHPN CQQQLLSIWY ENLSGLRQQT TAVKFLVVLA ENSP00000340913/1-931 LSRLKLAIKY EVKKFVAHPN CQQQLLSIWY ENLSGLRQQT MAVKFLVVLA bmy_07914T0/1-944 LSRLKLAIKY DVKKFVAHPN CQQQLLSIWY ENLSGLRQQT MAVKFLVVVA ENSTTRP00000001748/1-930 LSRLKLAIKY DVKKFVAHPN CQQQLLSIWY ENLSGLRQQT TAVKFLVVLA ENSBTAP00000053428/1-875 LSRLKLAIKY DVKKFVAHPN CQQQLLSIWY ENLSGLRQQT MAVKFLVVLA 451 500 BACU014490/1-850 VAIGLPFLAL IYWFAPCSKM GKIMRGPFMK FVAHAASFTI FLGLLVMNAA ENSP00000340913/1-931 VAIGLPFLAL IYWFAPCSKM GKIMRGPFMK FVAHAASFTI FLGLLVMNAA bmy_07914T0/1-944 VAIGLPFLAL IYWFAPCSKM GKIMRGPFMK FVAHAASFTI FLGLLVMNAA ENSTTRP00000001748/1-930 VAIGLPFLAL IYWFAPCSKM GKIMRGPFMK FVAHAASFTI FLGLLVMNAA ENSBTAP00000053428/1-875 VAVGLPFLAL VYWFAPCSKM GKIMRGPFMK FVAHAASFTI FLGLLVMNAA 501 550 BACU014490/1-850 DRFEGTKLLP NETSTDNAKQ LFRMKTSCFS WMEMLIISWV IGMIWTECKE ENSP00000340913/1-931 DRFEGTKLLP NETSTDNAKQ LFRMKTSCFS WMEMLIISWV IGMIWAECKE bmy_07914T0/1-944 DRFEGTKLLP NETSTDNAKQ LFRMKTSCFS WMEMLIISWV IGMIWTECKE ENSTTRP00000001748/1-930 DRFEGTKLLP NETSTDNAKQ LFRMKTSCFS WMEMLIISWV IGMIWTECKE ENSBTAP00000053428/1-875 DRFEGTKILP NETSTDHAKQ LFRMKTSCFS WMEMLIISWV IGMIWAECKE 551 600 BACU014490/1-850 IWTQGPKEYL FELWNMLDFG MLAIFAASFI ARFMAFWHAS KAQSIIDAND ENSP00000340913/1-931 IWTQGPKEYL FELWNMLDFG MLAIFAASFI ARFMAFWHAS KAQSIIDAND bmy_07914T0/1-944 IWTQGPKEYL FELWNMLDFG MLAIFAASFI ARFMAFWHAS KAQSIIDAND ENSTTRP00000001748/1-930 IWTQGPKEYL FELWNMLDFG MLAIFAASFI ARFMAFWHAS KAQSIIDAND ENSBTAP00000053428/1-875 IWTQGPKEYL FELWNMLDFG MLAIFAASFI ARFMAFWHAS KAQSIIDAND 601 650 BACU014490/1-850 TLKDLTKVTL GDNVKYYNLA RIKWDPSDPQ IISEGLYAIA VVLSFSRIAY ENSP00000340913/1-931 TLKDLTKVTL GDNVKYYNLA RIKWDPSDPQ IISEGLYAIA VVLSFSRIAY bmy_07914T0/1-944 TLKDLTKVTL GDNVKYYNLA RIKWDPSDPQ IISEGLYAIA VVLSFSRIAY ENSTTRP00000001748/1-930 TLKDLTKVTL GDNVKYYNLA RIKWDPSDPQ IISEGLYAIA VVLSFSRIAY ENSBTAP00000053428/1-875 TLKDLTKVTL GDNVKYYNLA RIKWDPSDPQ IISEGLYAIA VVLSFSRIAY 651 700 BACU014490/1-850 ILPANESFGP LQISLGRTVK DIFKFMVIFI MVFVAFMIGM FNLYSYYIGA ENSP00000340913/1-931 ILPANESFGP LQISLGRTVK DIFKFMVIFI MVFVAFMIGM FNLYSYYIGA bmy_07914T0/1-944 ILPANESFGP LQISLGRTVK DIFKFMVIFI MVFVAFMIGM FNLYSYYIGA ENSTTRP00000001748/1-930 ILPANESFGP LQISLGRTVK DIFKFMVIFI MVFVAFMIGM FNLYSYYIGA ENSBTAP00000053428/1-875 ILPANESFGP LQISLGRTVK DIFKFMVIFI MVFVAFMIGM FNLYSYYIGA 701 750 BACU014490/1-850 KQNEAFTTVE ESFKTLFWAI FGLSEVKSVV INYNHKFIEN IGYVLYGVYN ENSP00000340913/1-931 KQNEAFTTVE ESFKTLFWAI FGLSEVKSVV INYNHKFIEN IGYVLYGVYN bmy_07914T0/1-944 KQNEAFTTVE ESFKTLFWAI FGLSEVKSVV INYNHKFIEN IGYVLYGVYN ENSTTRP00000001748/1-930 KQNEAFTTVE ESFKTLFWAI FGLSEVKSVV INYNHKFIEN IGYVLYGVYN ENSBTAP00000053428/1-875 KQNEAFTTVE ESFKTLFWAI FGLSEVKSVV INYNHKFIEN IGYVLYGVYN 751 800 BACU014490/1-850 VTMVIVLLNM LIAMINSSFQ EIEDDADVEW KFARAKLWFS YFEEGRTLPV ENSP00000340913/1-931 VTMVIVLLNM LIAMINSSFQ EIEDDADVEW KFARAKLWFS YFEEGRTLPV bmy_07914T0/1-944 VTMVIVLLNM LIAMINSSFQ EIEDDADVEW KFARAKLWFS YFEEGRTLPV ENSTTRP00000001748/1-930 VTMVIVLLNM LIAMINSSFQ EIEDDADVEW KFARAKLWFS YFEK-RTLPV ENSBTAP00000053428/1-875 VTMVIVLLNM LIAMINSSFQ EIEDDADVEW KFARAKLWFS YFEEGRTLPV 801 850 BACU014490/1-850 PFNLVPSPKS LFYLLLRLKK WISELFQGHK KGFQEDVEMN KRNEEKKFGI ENSP00000340913/1-931 PFNLVPSPKS LFYLLLKLKK WISELFQGHK KGFQEDAEMN KINEEKKLGI bmy_07914T0/1-944 PFNLVPSPKS LFYLLLRLKK WISELFQGHK KGFQEDVEMN K--------- ENSTTRP00000001748/1-930 PFNLVPSPKS LFYLLLRLKK WISELFQGHK KGFQEDVEMN KRNEEKKFGI ENSBTAP00000053428/1-875 PFNLVPSPKS LFYLLLRLKK WISELFQGHK KGFQEDAEMN KRNEGKKFGI 851 900 BACU014490/1-850 LGSHEDLSKL SLDKKQWPLT KE-------- ---------- ---------- ENSP00000340913/1-931 LGSHEDLSKL SLDKKQVGHN KQPSIRSSED FHLNSFNNPP RQYQKIMKRL bmy_07914T0/1-944 ---------- ------FGHS KQSSLRSSED FQLNSFNNPP RQYQKIMKRL ENSTTRP00000001748/1-930 LGSHEDLSKL SLDKRQFGHS KQSSLRSSED FQLNSFSNPP RQYQKIMKRL ENSBTAP00000053428/1-875 LGSHEDLSKL SLDRKQFAHS KQSSIRSSED FQLNSFTNPP RQYQKIMKRL 901 950 BACU014490/1-850 ---------- ---------G DIK------- ---------- ---------- ENSP00000340913/1-931 IKRYVLQAQI DKESDEVNEG ELKEIKQDIS SLRYELLEEK SQNTEDLAEL bmy_07914T0/1-944 IKRYVLQAQI DKESDEVNEG ELKEIKQDIS SLRYELLEEK TQNSEDLAEL ENSTTRP00000001748/1-930 IKRYVLQAQI DKESDEVNEG ELKEIKQDIS SLRYELLEEK TQNSEDLAEL ENSBTAP00000053428/1-875 IKRYVLQAQI DKESDEVNEG ELKEIKQDIS SLRYELLEEK TQNSEDLAEL 951 1000 BACU014490/1-850 --------LM ICHHEAVHS ENSP00000340913/1-931 IRELGEKLSM EPNQEETNR bmy_07914T0/1-944 IRKLGEKLSM KPNQEESNR ENSTTRP00000001748/1-930 IRKLGEKLSM KPNQEESNR ENSBTAP00000053428/1-875 IRKLGEKLSM EPNQEESNR