KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:43 2014 Check: 00 .. Name: ENSTTRP00000016045/1-929 Len: 1023 Check: 5312 Weight: 1.00 Name: ENSP00000364037/1-929 Len: 1023 Check: 8714 Weight: 1.00 Name: ENSBTAP00000053429/1-931 Len: 1023 Check: 4616 Weight: 1.00 Name: bmy_01828T0/1-835 Len: 1023 Check: 8231 Weight: 1.00 Name: BACU017581/1-929 Len: 1023 Check: 518 Weight: 1.00 // 1 50 ENSTTRP00000016045/1-929 ---------- ---------- ---------- ---------- ---------- ENSP00000364037/1-929 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053429/1-931 ---------- ---------- ---------- ---------- ---------- bmy_01828T0/1-835 MWLKARGPSG AGPLLRGRGL PLPLPPPRLR AAAGRGHVSA ARRGRGPDFR BACU017581/1-929 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000016045/1-929 ---------- ---------- ---------- ---------- --MTKKRKRQ ENSP00000364037/1-929 ---------- ---------- ---------- ---------- --MTKKRKRQ ENSBTAP00000053429/1-931 ---------- ---------- ---------- ---------- --MTKKRKRQ bmy_01828T0/1-835 AAEGDAAALR PVAHAVAPWA PPRTLSPPAS VSRFRPGPQH SRMTKKRKRQ BACU017581/1-929 ---------- ---------- ---------- ---------- --MTKKRKRQ 101 150 ENSTTRP00000016045/1-929 DDFQKVKLKV GKKKPRLENA TVTNFKTKTI HLPDQLKEDG TLPTNNRKLN ENSP00000364037/1-929 HDFQKVKLKV GKKKPKLQNA TPTNFKTKTI HLPEQLKEDG TLPTNNRKLN ENSBTAP00000053429/1-931 DDFQKVKLKV GKKKPRSENA TLTNFKTKTI HLPEQLKEDV TLPTNNRKLN bmy_01828T0/1-835 DDFQKVKLKV GKKKPRLENA TVTNFKTKTI HLPDQLKEDG TLPTNNRKLN BACU017581/1-929 DDFQKVKLKV GKKKPRLENA TVTNFKTKTI HLPDQLKEDG TLPTNNRKLN 151 200 ENSTTRP00000016045/1-929 IKDLLSQMHH YNAGVKQSAL LGLKDLLSQY PFIIDAHLSN ILSEVTAVFT ENSP00000364037/1-929 IKDLLSQMHH YNAGVKQSAL LGLKDLLSQY PFIIDAHLSN ILSEVTAVFT ENSBTAP00000053429/1-931 IKDLLSQMHH YNAGVKQSAL LGLKDLLSQY PYIIDAHLSN ILSEVTAVFT bmy_01828T0/1-835 IKDLLSQMHH YNAGVKQSAL LGLKDLLSQY PFIIDAHLSN ILSEVTAVFT BACU017581/1-929 IKDLLSQMHH YNAGVKQSAL LGLKDLLSQY PFIIDAHLSN ILSEVTAVFT 201 250 ENSTTRP00000016045/1-929 DKDANVRLAA VQLLQFLAPK IRAEQISPFF PLVSAHLSSA MTHITEGIQE ENSP00000364037/1-929 DKDANVRLAA VQLLQFLAPK IRAEQISPFF PLVSAHLSSA MTHITEGIQE ENSBTAP00000053429/1-931 DKDANVRLAA VQLLQFLAPK IRAEQISPFF PLVSAHLSSA MTHITEGIQE bmy_01828T0/1-835 DKDANVRLAA VQLLQFLAPK IRAEQISPFF PLVSAHLSSA MTHITEGIQE BACU017581/1-929 DKDANVRLAA VQLLQFLAPK IRAEQISPFF PLVSAHLSSA MTHITEGIQE 251 300 ENSTTRP00000016045/1-929 DSLKVLDILL EQYPALITGR SSILLKNFVE LISHQQLSKG LVNRDRSQSW ENSP00000364037/1-929 DSLKVLDILL EQYPALITGR SSILLKNFVE LISHQQLSKG LINRDRSQSW ENSBTAP00000053429/1-931 DSLKVLDILL EQYPALITDR SSILLKNFVE LISHQQPSKG LVNRDRSQSW bmy_01828T0/1-835 DSLKVLDILL EQYPALITGR SSILLKNFVE LISHQQLSKG LVNRDRSQSW BACU017581/1-929 DSLKVLDILL EQYPALITGR SSILLKNFVE LISHQQLSKG LVNRDRSQSW 301 350 ENSTTRP00000016045/1-929 MLSVNPNRRL TSQQWRLKVL VRLSKFLQAL ADGSSRVRES EGLQEQKENP ENSP00000364037/1-929 ILSVNPNRRL TSQQWRLKVL VRLSKFLQAL ADGSSRLRES EGLQEQKENP ENSBTAP00000053429/1-931 ILSVNPNRRL TSQQWRLKVL VRLSKFLQAL TDGSSRLRES EGLQEQKENP bmy_01828T0/1-835 ILSVNPNRRL TSQQWRLKVL VRLSKFLQAL ADGSSRVRES EGLQEQKENP BACU017581/1-929 ILSVNPNRRL TSQQWRLKVL VRLSKFLQAL ADGSSRVRES EGLQEQKENP 351 400 ENSTTRP00000016045/1-929 HATSNSIFIN WKEHANDQQH IQVYENGGSQ PNVSSQFRLR YLVGGLGSVD ENSP00000364037/1-929 HATSNSIFIN WKEHANDQQH IQVYENGGSQ PNVSSQFRLR YLVGGLSGVD ENSBTAP00000053429/1-931 HATSNSIFIN WKEHANDQQH IQVYENGGSQ PNVSSQFRLR YLVGGLGTVD bmy_01828T0/1-835 HATSNSIFIN WKEHANDQQH IQVYENGGSQ PNVSSQFRLR YLVGGLGSVD BACU017581/1-929 HATSNSIFIN WKEHANDQQH IQVYENGGSQ PNVSSQFRLR YLVGGLGSVD 401 450 ENSTTRP00000016045/1-929 EGLSSTENLK GFIEIIIPLL IECWIEAVPP QLAASVGNGI ERESLQIMQQ ENSP00000364037/1-929 EGLSSTENLK GFIEIIIPLL IECWVEAVPP QLATPVGNGI EREPLQVMQQ ENSBTAP00000053429/1-931 EGLSSTENLK GFIEIIIPLL IECWIEAVPP QLAASVGNGI EREPLQVMQQ bmy_01828T0/1-835 EGLSSTENLK GFIEIIIPLL IECWIEAVPP QLAASVGNGI ERESLQVMQQ BACU017581/1-929 EGLSSTENLK GFIEIIIPLL IECWIEAVPP QLAASVGNGI EREPLQVMQQ 451 500 ENSTTRP00000016045/1-929 VLNIISLLWK LSKQQDETHK LXXXXXXXXX XXXXXXXXXX XXXXXXRITK ENSP00000364037/1-929 VLNIISLLWK LSKQQDETHK LESWLRKNYL IDFKHHFMSR FPYVLKEITK ENSBTAP00000053429/1-931 VLNIISLLWK LSKQHDETHK LESWLRKNYL IDFKHHFMSN FPYALKEITK bmy_01828T0/1-835 VLNIISLLWK LSKQHDETHK LESWLRKNYL TDFKHHFMSN FPYALKEITK BACU017581/1-929 VLNIISLLWK LSKQHDETHK LESWLRKNYL TDFKHHFMSN FPYALKEITK 501 550 ENSTTRP00000016045/1-929 HRRKETNKSI KHCTILSNNV DHLLLNLTLS DIMVSLANAS TLQKDSNWIE ENSP00000364037/1-929 HKRKEPNKSI KHCTVLSNNI DHLLLNLTLS DIMVSLANAS TLQKDCSWIE ENSBTAP00000053429/1-931 QKRKETNKSI KHCTILSNNV DHLLLNLTLS DIMVSLANAS TLQKDSSWIE bmy_01828T0/1-835 HRRKETNKSI KHCTILSNNV DHLLLNLTLS DIMVSLANAS TLQKDSNWIE BACU017581/1-929 HRRKETNKSI KHCTILSNNV DHLLLNLTLS DIMVSLANAS TLQKDSNWIE 551 600 ENSTTRP00000016045/1-929 MIRKFVTETL EDGFRLNSKQ LNRLLGVSWR LMQIQPNREA TESLIKAVYT ENSP00000364037/1-929 MIRKFVTETL EDGSRLNSKQ LNRLLGVSWR LMQIQPNRED TETLIKAVYT ENSBTAP00000053429/1-931 RIRKFVTETL EDGSRLNSKQ LNRLLGVSWR LMQIQPNREA TESLIKAVYT bmy_01828T0/1-835 MIRKFVTETL EDGFRLNSKQ LNRLLGVSWR LMQIQPNREA MESLIKAVYT BACU017581/1-929 MIRKFVTETL EDGFRLNSKQ LNRLLGVSWR LMQIQPNREA MESLIKAVYT 601 650 ENSTTRP00000016045/1-929 LYQQRGLLLP VRTLLLKFFS KIYQKEELRS YRVXXXXXXX XXXXXXXXXX ENSP00000364037/1-929 LYQQRGLILP VRTLLLKFFS KIYQTEELRS CRFRYRSKVL SRWLAGLPLQ ENSBTAP00000053429/1-931 LYQQRGLLIP VRTLLLKFFS KIYQKEELRA YRIRYRSKVL SRWLAGLPLQ bmy_01828T0/1-835 LYQQRGLLLP VRTLLLKFFS KIYQKEELRS YRVRYRSKVL SRWLAGLPLQ BACU017581/1-929 LYQQRGLLLP VRTLLLKFFS KIYQKEELRS YRVRYRSKVL SRWLAGLPLQ 651 700 ENSTTRP00000016045/1-929 XXXXXXXXXX XXXQLIDIIH TAAARANKEL LKSLQVTALR IYDPQEGTVV ENSP00000364037/1-929 LAHLGSRNPE LSTQLIDIIH TAAARANKEL LKSLQATALR IYDPQEGAVV ENSBTAP00000053429/1-931 LAHLGSRNPE LSTQLIDIIH TAAARANKEL LKSLQVTALR IYDPQEGTVV bmy_01828T0/1-835 LAHLGSRNPE LSTQLIDIIH TAAARANKEL LKSLQVTALR IYDPQEGTMV BACU017581/1-929 LAHLGSRNPE LSTQLIDIIH TAAARANKEL LKSLQVTALR IYDPQEGTMV 701 750 ENSTTRP00000016045/1-929 VLPAESQQLL VQLVYFLPSL PADLLSRLSR CCIMGRLSSS LAAMLIGILH ENSP00000364037/1-929 VLPADSQQRL VQLVYFLPSL PADLLSRLSR CCIMGRLSSS LAAMLIGILH ENSBTAP00000053429/1-931 VLPAESQQLL VQLVYFLPSL PADLLSRLSR CCIMGRLSAD LAAMLIGILH bmy_01828T0/1-835 VLPAESQQLL VQLVYFLPSL PADLLSRLSR CCIMGRLSSS LAAMLIGILH BACU017581/1-929 VLPAESQQLL VQLVYFLPSL PADLLSRLSR CCIMGRLSSS LAAMLIGILH 751 800 ENSTTRP00000016045/1-929 MRSSFSGWKS SVKD--WLMS DVDYFSFLFS TLTGFSKEEL TWLQSLRGVP ENSP00000364037/1-929 MRSSFSGWKY SAKD--WLMS DVDYFSFLFS TLTGFSKEEL TWLQSLRGVP ENSBTAP00000053429/1-931 MRSSFSGWKS SVKEQNLNIS NADYFSFLFS TLTGFSKEEL TWLQSLRGVP bmy_01828T0/1-835 MRSSFSGWKS SVKD--WLMS DVDYFSFLFS TLTGFSKEEL TWLQSLRGVP BACU017581/1-929 MRSSFSGWKS SVKD--WLMS DVDYFSFLFS TLTGFSKEEL TWLQSLRGVP 801 850 ENSTTRP00000016045/1-929 HVIQTQLSPV LLYLTDLDQF LHHWDVTETV CHNLLVIPAR SQSFDILQSA ENSP00000364037/1-929 HVIQTQLSPV LLYLTDLDQF LHHWDVTEAV FHSLLVIPAR SQNFDILQSA ENSBTAP00000053429/1-931 HVIQTQLSPM LLYLTDLDQF LHHWDVTETV CHSLLVVPVR SQSFDVLQTA bmy_01828T0/1-835 HVIQTQLSPV LLYLTDLDQF LHHWDVTEVI VHF------- ---------- BACU017581/1-929 HVIQTQLSPV LLYLTDLDQF LHHWDVTETV CHNLLVIPAR SQSFDILQSA 851 900 ENSTTRP00000016045/1-929 ISKHLVGLTV IPDSTVGCVL GVICKLLDHT CVLSETLLPF LASCCYSLLY ENSP00000364037/1-929 ISKHLVGLTV IPDSTAGCVF GVICKLLDHT CVVSETLLPF LASCCYSLLY ENSBTAP00000053429/1-931 ISKHLVGLTV IPDSTAGCVL GVICKLLDHT CVLSETLLPF LASCCYSLLY bmy_01828T0/1-835 ---------- ---------- ---------- ---------- ---------- BACU017581/1-929 ISKHLVGLTV IPDSTVGCVL GVICKLLDHT CVLSEMLLPF LASCCYSLLY 901 950 ENSTTRP00000016045/1-929 FLLTLEKGEA EHLRKRDKLW GVCVSILALL PRVLRLMLQS LRVSRAGPEE ENSP00000364037/1-929 FLLTIEKGEA EHLRKRDKLW GVCVSILALL PRVLRLMLQS LRVNRVGPEE ENSBTAP00000053429/1-931 FLLTLEKGEA EHLRKRDKLW GVCVSVLALL PRVLRLMLQS LRVNRAGPEE bmy_01828T0/1-835 ---------- ----KRNS-- ---------- ---------- ---------- BACU017581/1-929 FLLTLEKGEA EHLRKRDKLW GVCVSILALL PRVLRLMLQS LRVSRAGPEE 951 1000 ENSTTRP00000016045/1-929 LPVVGQLLRL LLQHAPLRTH MLTNAILVQQ IIKNITTLKS GGVQEQWLTD ENSP00000364037/1-929 LPVVGQLLRL LLQHAPLRTH MLTNAILVQQ IIKNITTLKS GSVQEQWLTD ENSBTAP00000053429/1-931 LPVVGQLLRL LLQHAPLRTH MLTNAILVQQ IIKNITTLKS GGVQEQWLTD bmy_01828T0/1-835 ---------- ---------- ---------- ---------- ---------- BACU017581/1-929 LPVVGQLLRL LLQHAPLRTH MLTNAILVQQ IIKNITTLKS GGVQEQWLTD 1001 1050 ENSTTRP00000016045/1-929 LHYCFNVYIT GHPQGPSMLS TVY ENSP00000364037/1-929 LHYCFNVYIT GHPQGPSALA TVY ENSBTAP00000053429/1-931 LHYCFNVYIT GHPQGPNALS TVY bmy_01828T0/1-835 ---------- ---------- --- BACU017581/1-929 LHYCFNVYIT GHPQGPSMLS TVY