KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:46 2014 Check: 00 .. Name: ENSP00000427882/1-1434 Len: 1501 Check: 8517 Weight: 1.00 Name: ENSTTRP00000004920/1-1356 Len: 1501 Check: 4817 Weight: 1.00 Name: ENSBTAP00000053432/1-1443 Len: 1501 Check: 7664 Weight: 1.00 Name: bmy_16654T0/1-1459 Len: 1501 Check: 6160 Weight: 1.00 Name: BACU017030/1-1121 Len: 1501 Check: 8624 Weight: 1.00 // 1 50 ENSP00000427882/1-1434 MLRLPKKGLP RFEQVQDEDT YLENLAIQRN ASAFFEKYDR SEIQELLTTA ENSTTRP00000004920/1-1356 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053432/1-1443 MLRLPKKGAP RFDQNQDEET YLENLAVQRN ASAFFEKYDR SEVQELLTTA bmy_16654T0/1-1459 MLRLPKKGAP RFDQIQDEET YLENLAVQRN ASAFFEKYDR SEVQELLTTA BACU017030/1-1121 MLRLPKKGAP RFDQIQDEET YLENLAVQRN ASAFFEKYDR SEVQELLTTA 51 100 ENSP00000427882/1-1434 LVSWLSAKED VRSQVDLPCG IMSQMNNVGF STAILLTPVD PTALLDYREV ENSTTRP00000004920/1-1356 ---------- ---------- -MSQINNVAF -TAILLTPVD PXXXXXXXXX ENSBTAP00000053432/1-1443 LVSWLSAKED VRSQLDMPCG IMSQMNNVGF STAILLTPVD PTALLDYREV bmy_16654T0/1-1459 LVSWLSAKED VHSQLDIPCG IMSQINNVAF STAILLTPVD PTALLDYREV BACU017030/1-1121 LVSWLSAKED VHSQLDIPCG IMSQINSVAF STAILLTPVD PTALLDYREV 101 150 ENSP00000427882/1-1434 HQMIRELAIG IYCLNQIPSI SLEANYDQSS SCQLPPAYYD TRIGQILINI ENSTTRP00000004920/1-1356 XXXXXXXXXX XXXXXXXXSI SLEANYDQSS SCQLPPAYYD TRIGQILINI ENSBTAP00000053432/1-1443 HQIIRELAVG IYCLNQIPSI SLEANYDQSS SCQLPPAYFD TRIGQILINI bmy_16654T0/1-1459 HQIIRELAVG IYCLNQIPSI SLEANYDQSS SCQLPPAYYD TRIGQILINI BACU017030/1-1121 HQIIRELAVG IYCLNQIPSI SLEANYDQSS SCQLPPAYYD TRIGQILINI 151 200 ENSP00000427882/1-1434 DYMLKALWHG IYMPKEKRAR FSELWRAIMD IDPDGKPQTN KDIFSEFSSA ENSTTRP00000004920/1-1356 DYMLKALWHG IYMPKEKRAR FSELWRTIVD IDPDGKPQTN RDIFAEFSSA ENSBTAP00000053432/1-1443 DYMLKALWHG IYMPKEKRAR FSELWRTIMD INPDGKPQTN RDIFAEFSSA bmy_16654T0/1-1459 DYMLKALWHG IYMPKEKRAR FSELWRTIMD IDPDGKPQTN RDIFAEFSSA BACU017030/1-1121 DYMLKALWHG IYMPKEKRAR FSELWRTIMD IDPDGKPQTN RDIFAEFSSP 201 250 ENSP00000427882/1-1434 GLTDITKDPD FNEIYDEDVN EDPTYDPNSP EETAVFMKYA ENIMLKLTFS ENSTTRP00000004920/1-1356 GLIDITKDPD FDGIYDEDMN ADPTYNPNSP EEKAVFMKYA ENILLKLTFS ENSBTAP00000053432/1-1443 GLIDITKDPD FDGIYNEDMN EDPTYNPNSP EEKAVFMKYA EYILLKMTFS bmy_16654T0/1-1459 GLIDITKDPD FDGIYDEDMN EDPTYNPNSP EEKAVFMKHA ENILLKLTFS BACU017030/1-1121 GLIDITKDPD FDGIYDEDMN EDPTYNPNSP EEKAVFMKHA ENILLKLTFS 251 300 ENSP00000427882/1-1434 TTQIQQYENV FIFETGYWLT NAIKYNQDYL DICTYQRLQQ RLYLQKKIIQ ENSTTRP00000004920/1-1356 TTQVQQCENV FIFETAYWLT NAVRYNQDYL DICTYQRLQQ RLYLQKKIXX ENSBTAP00000053432/1-1443 TTQVQQCENV FIFETAYWLT NAIKCNQDNL DICTYQRLHQ RLYLQKKIIQ bmy_16654T0/1-1459 TTQVQQCENV FIFETAYWLT NAVRYNQDYL DICTYQRLQQ RLYLQKKIIQ BACU017030/1-1121 TTQVQQCENV FIFETAYWLT NA-------- ---------- ---------- 301 350 ENSP00000427882/1-1434 KHFEKKKDIR RGIGYLKLIC FLIPFLLSLK KKMKVPYLSS LLQPFSDDKV ENSTTRP00000004920/1-1356 XXXXXEKEIR KGIGYLKFIC FLI--FLLLK KKMKVP-LSS LLQPFSDDKV ENSBTAP00000053432/1-1443 KHLEKKKEIR KGIGYLKLIC FLTPFLLSLK KKMKVPYLSG LLQPFSDDKV bmy_16654T0/1-1459 KHFEKKKEIR KGIGYLKLIC FLTPFLLSLK KKMKVPYLSS LLQPFSDDKV BACU017030/1-1121 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000427882/1-1434 KTERELPPFI YGRDFKCQNF HYKENQYFHV HGGIEFDIST PSIENALEDF ENSTTRP00000004920/1-1356 KTERELPPFI YGRDFKCQNF HYKEDQYFHV HGGIEFDIST PSIENALEDF ENSBTAP00000053432/1-1443 KTERELPPFI YGRDFKCQNF HYKEDQYFHI HGGIEFDIST PSIENASEDF bmy_16654T0/1-1459 KTERELPPFI YGRDFKCQNF HYKEDQYFHV HGGIEFDIST PSIENALEDF BACU017030/1-1121 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000427882/1-1434 QKNLEKIRDC AANTFIEDSG YKEYYSIPVM EFHGKSYYVI YFELETFYQQ ENSTTRP00000004920/1-1356 KNNLEKIRDC AANTFAEDSG YKEYYSIPIM KLHGKSYYVI SFELETFYQQ ENSBTAP00000053432/1-1443 KNNLEKIRDC AVNTFAEDSG YKEHYSIPVV KFNGKSYYVI SFELEIFYQQ bmy_16654T0/1-1459 KNNLEKIRDC AANTFAEDSG YKEYYSIPVM KLNGKSYYVI SFELETFYQQ BACU017030/1-1121 -NNLEKIRDC AANTFAEDSG YKDYYSIPVM KLNGKSYYVI SFELETFYQQ 451 500 ENSP00000427882/1-1434 LYKTQWWGAI NEIVNNLRLK RLPLTDAQLH EQFKKKLGFK RAMKCKSIPF ENSTTRP00000004920/1-1356 LYKTQWWGAI NEIVNNLRLK RLPLTDAQLH EQFKKKFGFK KAMKCKSIPF ENSBTAP00000053432/1-1443 LYKTQWWGAI NEIVNNLRLK RLPLTDAQLH EQFKKKFGFK KAMKCKSIPF bmy_16654T0/1-1459 LYKTQWWGAI NEIVNNLRLK RLPLTDAQLH EQFKKKFGFK KAMKCKSIPF BACU017030/1-1121 LYKTQWWGAI NEIVNNLRLK RLPLTDAQLH EQFKKKFGFK KAMKCKS--- 501 550 ENSP00000427882/1-1434 GMKSAVERGL SAVFHTFSRK TSSSTINVSD EAGYTIFHHA ALHNRVSIIC ENSTTRP00000004920/1-1356 GMKSAAERGL SAVFHTFSRR TSSSTINVSD EAGYAIFHQA ALHNRVPIIC ENSBTAP00000053432/1-1443 GMKSAVERGL YAVFHTFSRK TSSSTINISD EAGYAVFHHA ALHNRVPIIC bmy_16654T0/1-1459 GMKSAVERGL SAVFHTFSRK TSSSTINVSD EAGYAIFHQA ALHNRVPIIC BACU017030/1-1121 ---------- ---------- ---------- ---------- --PARAP--- 551 600 ENSP00000427882/1-1434 QLCNANFKVN QRRFVTFSQ- ---------- --GPTPLHLA AQACSLETTV ENSTTRP00000004920/1-1356 QLCNANFNVN QRRFIILSQ- ---------- --GPTPLHLA AQACSLETTT ENSBTAP00000053432/1-1443 QLCNANFNVN QRRFIILSQA ESSKVDMKKE RNGPTPLHLA AQACSLETTI bmy_16654T0/1-1459 QLCNANFNVN QRCFIILNQ- ESSKLDMKKE RNGPTPLHLA AQACSLETTI BACU017030/1-1121 ---------- --HWQLLTR- --------SQ RTG------I AKSAEAESRE 601 650 ENSP00000427882/1-1434 CLLCSKADYT LSEKRGWMPI HFAAFYDNVC IIIALCRKDP SLLEAEATAE ENSTTRP00000004920/1-1356 CLLYFKADYA LSEKRGWMPI HFAAFYDNIC IIIVLCRKDP SLLEAEATAE ENSBTAP00000053432/1-1443 CLLCFKADYT LSEKRGWMPI HFAAFYDNIC IIIVLCRKDP SLLEAEATAE bmy_16654T0/1-1459 CLLCFKADYT LSEKRGWMPI HFAAFYDNIC IIIVLCRKDP SLLEAEATAE BACU017030/1-1121 GL-------- ----RG---- ---------- ---------- ---------R 651 700 ENSP00000427882/1-1434 NQCTPLLLAA TSGALDTIQY LFSIGANWRK TDIKGNNIIH LSVLTFHTEV ENSTTRP00000004920/1-1356 NQCTPLLLAA TSGALDTIQY LLSVGANWRK TDIKGNNIIH LAVLTFHTEV ENSBTAP00000053432/1-1443 NQCTPLLLAA TSGALDSIQY LLSLGANWRK TDIKGNNIIH LSVLTFHTEV bmy_16654T0/1-1459 NQCTPLLLAA TSGALDTIQY LLSLGANWRK TDIKGNNIIH LAVLTFHTEV BACU017030/1-1121 NQCTPLLLAA TSGALDTIQY LLSLGANWRK TDIKGNNIIH LAVLTFHTEV 701 750 ENSP00000427882/1-1434 LKYIIKLNIP ELPVWKTLVE MLQCESYKRR MMAVMSLEVI CLANDQYWRC ENSTTRP00000004920/1-1356 LKHVIELNIP ELPVWKTLVE MLQCESYKRR MMAVMSLEVI CLANDEYWKC ENSBTAP00000053432/1-1443 LKHIIELNIP ELPVWKTLVE MLQCESYKRR MMAVMSLEVI CLAHDEYWKC bmy_16654T0/1-1459 LKHVIELNIP ELPVWKTLVE MLQCESYKRR MMAVMSLEVI CLANDEYWKC BACU017030/1-1121 LKHVIALNIP ELPVWKTLV- ---------- ---------- ---------- 751 800 ENSP00000427882/1-1434 ILDAGTIPAL INLLKSSKIK LQCKTVGLLS NISTHKSAVH ALVEAGGIPS ENSTTRP00000004920/1-1356 ILDAGTIPAL INILKGSKIK LQCKTVGLLS NISTHAKIVH ALVEAGAIPA ENSBTAP00000053432/1-1443 ILDAGTIPAL INLLKGSKIK LQCKTVGLLS NISTHPSIVH ALVEAGAIPA bmy_16654T0/1-1459 ILDAGTIPAL INLLKGSKIK LQCKTVGLLS NISTHAKIVH ALVEAGAIPA BACU017030/1-1121 ----GTIPAL INLLKGSKIK LQCKTVGLLS NISTHAKIVH ALVEAGAIPA 801 850 ENSP00000427882/1-1434 LINLLVCDEP EVHSRCAVIL YDIAQCENKD VIAKYNGIPS LINLLNLNIE ENSTTRP00000004920/1-1356 LIDLLVSDEP ELHSRCAVIL YDIAQLENKD VIAKYNGIPA LINLLNLDIE ENSBTAP00000053432/1-1443 LINLLVSEEP ELHSRCAVIL YDIAQLENKD VVAKHNGIPA LINLLNLDIE bmy_16654T0/1-1459 LINLLVSDEP ELHSRCAVIL HDIAQLENKD VIAKYNGIPA LINLLNLDIE BACU017030/1-1121 LINLLVSDEP ELHSRCAVIL YDIAQLENKD VIAKHNGIPA LINLLNLDIE 851 900 ENSP00000427882/1-1434 NVLVNVMNCI RVLCIGNENN QRAVREHKGL PYLIRFLSSD SD-------- ENSTTRP00000004920/1-1356 SVLVNVMNCL RVLCMGNKNN QRAVRDHKGI PYLITFLSSE SD-------- ENSBTAP00000053432/1-1443 SVLVNVMNCV RVLCMGNKNN QRAVRDHKGI PYLISFLSSD SD-------- bmy_16654T0/1-1459 SVLVNVMNCL RVLY------ ---------- ---------- ---------- BACU017030/1-1121 SVLVNVMNCL QVLCMGNKNN QKAVRDHKGI PYLITFLSSD SDLFNWFLNS 901 950 ENSP00000427882/1-1434 ---VLKAVSS AAIAEVGRDN KEIQDAIAME GAIPPLVALF KGKQISVQMK ENSTTRP00000004920/1-1356 ---VLTAVSS VTIAEVARDN KEVQDAMAME GAIPPLVALF VGKQLGVQVK ENSBTAP00000053432/1-1443 ---VLTAVSS VTIAEVARDN KEVQDAMALE GAIPPLVALF KGKQLSVQVK bmy_16654T0/1-1459 ---VLTAVSS VTIAEVARDN KEVQDAMAME GAIPPLVALF IGKQLSVQVK BACU017030/1-1121 FEDVLTAVSS VTIAEVARDN KEVQDAMAME GAIPPLVALF IGKQLSVQVK 951 1000 ENSP00000427882/1-1434 GAMAVESLAS HNALIQKAFL EKSLTKYLLK LLKAFQIDVK EQGAVALWAL ENSTTRP00000004920/1-1356 GAMAVEALAS YNPAIQRAFL EKSLSKYLLK LLKAFQIDVK EQGAVTLWAL ENSBTAP00000053432/1-1443 GAMAVEALAS YNPAIQRAFL EKSLSKYLLK LLKAFQIDVK EQGAVALWAL bmy_16654T0/1-1459 GAMAVEALAS YNPAIQRAFL EKSLSKYLLK LLKAFQIDVK EQGAVALWAL BACU017030/1-1121 GAMAVEALAS YNPAIQRAFL EKSLSKYLLK LLKAFQIDVK EQGAVALWAL 1001 1050 ENSP00000427882/1-1434 AGQTLKQQKY MAEQIGYSFI INMLLSPSAK MQYV------ ---------- ENSTTRP00000004920/1-1356 AGQTLKQRKY MAEQIGYNFI INMLLSPSAK MQYV------ ---------- ENSBTAP00000053432/1-1443 AGQTLKQQKY MAEQIGYNFI INMLLSPSAK MQYV------ ---------- bmy_16654T0/1-1459 AGQTLKQQKY MAEQIGYNFI INMLLSPSAK MQYVGKLFSM HKSVQYRTGH BACU017030/1-1121 AGQTLKQQKY MAEQIGYNFI INMLLSPSAK MQYV------ ---------- 1051 1100 ENSP00000427882/1-1434 ---------- --GGEAVIAL SKDSRMHQNQ ICEGNGIAPL VRLLRISTIA ENSTTRP00000004920/1-1356 ---------- --GGEAVIAL SKDSRIHQNQ ICEGNGIAPL VRLLKIS-IA ENSBTAP00000053432/1-1443 ---------- --GGEAVIAL SKDSKIHQNQ ICEGNGIAPL VRLLRISKIA bmy_16654T0/1-1459 WNITHVSCFS LPGGEAVIAL SKDSRIHQNQ ICEGNGVAPL VRLLRISKIA BACU017030/1-1121 ---------- --GGEAVIAL SKDSRIHQNQ ICEGNGIAPL VRLLRISKIA 1101 1150 ENSP00000427882/1-1434 EGTLLSVIRA VGSICI---- ---------- -GVAHTSNPV SQQLVVDENA ENSTTRP00000004920/1-1356 EGTLLSVIKA VGSICI---- ---------- -GVAHTSNPI SQQFLVEEKA ENSBTAP00000053432/1-1443 DGTLLSVIKA VGSICI---- ---------- -GVAHTSNPI SQQFVVDENA bmy_16654T0/1-1459 EGTLLSVIKA VGSICIGLWK KYYLMELWIL TGVAHTSNPI SQQFVVEENA BACU017030/1-1121 EGTLLSVIKA VGSICI---- ---------- -GVAHTSNPI SQQFVVEENA 1151 1200 ENSP00000427882/1-1434 FPVLIQLLRN HPSPNIKVEV AFSLACIVLG NDVLQKDLHE NEGFEYADVL ENSTTRP00000004920/1-1356 FPVLIQLLRN HPSPNIKVEV AFSLACIVLR NDQLQNELQE NEGFNYADVL ENSBTAP00000053432/1-1443 FPVLIQLLRS HPSPNIKVEV AFSLACIVLR NDLLQKELQE NEGFDYADVL bmy_16654T0/1-1459 FPVLIQLLRN HPSPNIKVEV AFSLACIVLR NDQLQNELQE NEGFNYADVL BACU017030/1-1121 FPVLIQLLRN HPSPNIKVEV AFSLACIVLR NDQLQNELQE NEGFNYADVL 1201 1250 ENSP00000427882/1-1434 YLLHSTEKDI CLRAGYALTL FAFNNRFQQY LILESGIMTI SIFERFLEST ENSTTRP00000004920/1-1356 YLLHSQDKDI CLRAGYALTL FAFNSRFQQY LILESGIITI STFEPFLEST ENSBTAP00000053432/1-1443 YLLHSEDKDI CLRAGYALTL FAFNNRFQQY LILENGKMSI SIFEPFLEST bmy_16654T0/1-1459 YLFHSQDKDI CLRAGYALTL FAFNSRFQQY LILESGIMTI STFEPFLEST BACU017030/1-1121 YLLHSQDKDI CLRAGYALTL FAFNSRFQQY LILESGIMTI STFEPFLEST 1251 1300 ENSP00000427882/1-1434 VETEKAMAAF QIVVLAKVIR DMDHITLSAR GVTILVDSLY SVQTSTIVLT ENSTTRP00000004920/1-1356 FETEKAMAAF QIIILAKVII DVDHITLTAR GVTILVDSLY SVHSTTIALT ENSBTAP00000053432/1-1443 IETEKAMAAF QIIVLAKVII DVDHITLTAR GVTILVDSLY SADSTTIVLT bmy_16654T0/1-1459 FETEKAMAAF QIIILAKVII DVDHITLTAR GVTILVDSLY SVHSTTIVLT BACU017030/1-1121 FETEKAMAAF QIIILAKVII DVDHITLTAR GVTILVDSLY SVHSTTIVLT 1301 1350 ENSP00000427882/1-1434 GNLIASLAHS RAGIPEAFTT LGTIQRLCYH LYSGIEEVRA ACSSALGYLT ENSTTRP00000004920/1-1356 GNLIATLAHS RGGIPEAFTT LGTIQRLCYH LYSRQEEVRM ACSSALGYLT ENSBTAP00000053432/1-1443 GNLIATLAHS RAGIPEAFTT LGTIQQLCYH LYSGQEEVRM ACSSALGYLT bmy_16654T0/1-1459 GNLIATLAHS RAGIPEAFTT LGTIQRLCYH LYSRQEEVRM ACSSALGYLT BACU017030/1-1121 GNLIATLAHS RAGIPEAFTT LGTIQRLCYH LYSRKKKVRM ACSSALGYLT 1351 1400 ENSP00000427882/1-1434 YNANAFRILL KECRNKPNQF IRIKNNISRD ASINPAFLKE FQMQQTLVGL ENSTTRP00000004920/1-1356 YNANAFRILL KECRNKPNQF LRITKNISRD ASINPAFLKE FQMQQR-VGL ENSBTAP00000053432/1-1443 YNANAFRLLL KECRNKPNQF LRITNNISRD ASINPAFLKE FKMQQK-VGL bmy_16654T0/1-1459 YNANAFRILL KECRNKPNQF LRITKNISRD ASINPAFLKE FQMQQR-VGL BACU017030/1-1121 YNANAFRILL KECRNKPNQF LRITKNISRD ASINPAFLKE FQMQQR-VGL 1401 1450 ENSP00000427882/1-1434 PSLSLEKNGG PSIIPIFKRG KEHRRKLKPK IQPKDSLTLL PPVTNFMGLF ENSTTRP00000004920/1-1356 PSLSLEKNGG PSIIPVFKKG KEHRRKLKPK IQPRDSLTFI PPVTNFMGLF ENSBTAP00000053432/1-1443 PSLSLEKNGG PSIIPVFKKG KEHRRKLKPK IQPRDSLTFI PPVTNFMGLF bmy_16654T0/1-1459 PSLSLEKNGG PSIIPVFKKG KAHRRKLKPK IQPRDSLTFI PPVTNFMGLF BACU017030/1-1121 PSLSLEKNGG PSIIPVFKK- ---------- ---------- ---------- 1451 1500 ENSP00000427882/1-1434 KATKKTKDSH NIFSFSSTIT SDITNVSRPR IVCLNQLGKH VQKANPEPAE ENSTTRP00000004920/1-1356 K-TKKTTVSH SSFSFSSAIS SDITTVSRPR IVLLSQLGKH VQKANPEPAE ENSBTAP00000053432/1-1443 KTTKKTTVSH NIFSFSSAIS SDIITVSRPR IVLLNQLGKH VQKANPEP-- bmy_16654T0/1-1459 K-TKQTTVSH NIFSFSSAIS SDITTVSRPR IVLLSQLGKH VQKANPEPAE BACU017030/1-1121 ---------- ---------- -DITTVSRPR IVLLSQLGKH VQKANLEPAE 1501 1550 ENSP00000427882/1-1434 G ENSTTRP00000004920/1-1356 G ENSBTAP00000053432/1-1443 - bmy_16654T0/1-1459 G BACU017030/1-1121 G