KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:47 2014 Check: 00 .. Name: bmy_15764T0/1-374 Len: 914 Check: 384 Weight: 1.00 Name: ENSP00000335333/1-668 Len: 914 Check: 3950 Weight: 1.00 Name: ENSBTAP00000053438/1-656 Len: 914 Check: 8793 Weight: 1.00 Name: BACU006476/1-906 Len: 914 Check: 378 Weight: 1.00 Name: ENSTTRP00000005454/1-624 Len: 914 Check: 5908 Weight: 1.00 // 1 50 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSP00000335333/1-668 --------ME LEVPDEAESA EAGAVPSEAA WA-------- -----AESGA ENSBTAP00000053438/1-656 ---------- ---------- -SGGCPADRQ WG-------- -----ASEGC BACU006476/1-906 MELSVESGEH QRFSPEKDDP GGGECPMGPT LACLAKVDRK CPAQPASCSV ENSTTRP00000005454/1-624 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- -----MPTP- ENSP00000335333/1-668 AAGLAQKKAA PT-------- ---------- --------EV LSMTAQPGPG ENSBTAP00000053438/1-656 RAGLAIQRVS PS-------- ---------- ---------V PLMTGQPGPG BACU006476/1-906 ASGISLHLSG PQMLAKQISN CHQTVKTCLS RQRLEFQGGA PLMTGQPGPG ENSTTRP00000005454/1-624 ---SAPKKTT PV-------- ---------- --------EA PLMTGQPGPG 101 150 bmy_15764T0/1-374 ---------- ---------- ----SLRSS- ---------- ---------- ENSP00000335333/1-668 HGKKLGHRGV DASGETTYKK TTSSTLKGAI QLGIGYTVGH LSSKPERDVL ENSBTAP00000053438/1-656 HGKKLGHRGV DASGETTYKK TTSSTLKGAI QLGIGYTVGN LSSKPERDVL BACU006476/1-906 HGKKLGHRGV DASGETTYKK TTSSTLKGAI QLGIGYTVGN LSSKPERDVL ENSTTRP00000005454/1-624 HGKKLGHRGV DASGETTYKK TTSSTLKGAI QLGIGYTVGN LSSKPERDVL 151 200 bmy_15764T0/1-374 ---------- ---------- ---------- RRCSATAWCW -------RAS ENSP00000335333/1-668 MQDFYVVESI FFPSEGSNLT PAHHFQDFRF KTYAPVAFRY FRELFGIRPD ENSBTAP00000053438/1-656 MQDFYVVESI FFPSEGSNLT PAHHFQDFRF KTYAPVAFRY FRELFGIRPD BACU006476/1-906 MQDFYVVESI FFPSEGSNLT PAHHFQDFRF KTYAPVAFRY FRELFGIRPD ENSTTRP00000005454/1-624 MQDFYVVESI FFPSEGSNLT SAHHFQDFRF KTYAPVAFRY FRELFGIRPD 201 250 bmy_15764T0/1-374 RSWTTACSWA ---------- ---------- ---------- ---------- ENSP00000335333/1-668 DYLYSLCNEP LIELSNPGAS GSLFYVTSDD EFIIKTVMHK EAEFLQKLLP ENSBTAP00000053438/1-656 DYLYSLCNEP LIELSNPGAS GSLFYVTSDD EFIIKTVMHK EAEFLQKLLP BACU006476/1-906 DYLYSLCNEP LIELSNPGAS GSLFYVTSDD EFIIKTVMHK EAEFLQKLLP ENSTTRP00000005454/1-624 DYLYSLCNEP LIELSNPGAS GSLFYVTSDD EFIIKTVMHK EAEFLQKLLP 251 300 bmy_15764T0/1-374 ---------- ---------- -CTTSTSRSV ------SGRP RAPRAPLT-- ENSP00000335333/1-668 GYYMNLNQNP RTLLPKFYGL YCVQSGGKNI RVVVMNNILP RVVKMHLKFD ENSBTAP00000053438/1-656 GYYMNLNQNP RTLLPKFYGL YCVQSGGKNI RVVVMNNVLP RVVKMHLKFD BACU006476/1-906 GYYMNLNQNP RTLLPKFYGL YCVQSGGKNI RVVVMNNVLP RVVKMHLKFD ENSTTRP00000005454/1-624 GYYMNLNQNP RTLLPKFYGL YCVQSGGKNI RVVVMNNVLP RVVRMHLKFD 301 350 bmy_15764T0/1-374 --------RS GRWARRRSTP ---------- ---------- ---------- ENSP00000335333/1-668 LKGSTYKRRA SKKEKEKSFP TYKDLDFMQD MPEGLLLDAD TFSALVKTLQ ENSBTAP00000053438/1-656 LKGSTYKRRA SKKEKEKSIP TYKDLDFIQD MPEGLMLDAD TFSALVKTLQ BACU006476/1-906 LKGSTYKRRA SKKEKEKSIP TYKDLDFIQD MPEGLMLDAD TFSALVKTLQ ENSTTRP00000005454/1-624 LKGSTYKRRA SKKEKEKSIP TYKDLDFIQD MPEGLMLDAD TFSALVKTLQ 351 400 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- --RPWSP--- ENSP00000335333/1-668 RDCLVLESFK IMDYSLLLGV HNIDQHERER QAQGAQSTSD EKRPVGQKAL ENSBTAP00000053438/1-656 RDCLVLESFK IMDYSLLLGV HNIDQQERER QAEGAQSTAD EKRPLGQKAL BACU006476/1-906 RDCLVLESFK IMDYSLLLGV HNIDQQERER QAEGAQSTAD EKRPLGQKAL ENSTTRP00000005454/1-624 RDCLVLESFK IMDYSLLLGV HNIDQQERER QAEGAQSTAD EKRPLGQKAL 401 450 bmy_15764T0/1-374 ------SRAG PRAGRPSRRT TRRMGGIPAV NGRGERLLLH IGIIDILQSY ENSP00000335333/1-668 YSTAMESIQG GAARGEAIES DDTMGGIPAV NGRGERLLLH IGIIDILQSY ENSBTAP00000053438/1-656 YSTAMESIQG GAARGEAIET DDTMGGIPAV NGRGERLLLH IGIIDILQSY BACU006476/1-906 YSTAMESIQG GAARGEAIET DDTMGGIPAV NGRGERLLLH IGIIDILQSY ENSTTRP00000005454/1-624 YSTAMESIQG GAARGEAIET DDTMGGIPAV NGRGERLLLH IGIIDILQSY 451 500 bmy_15764T0/1-374 RFIKKLEHTW KALVHDGDTI SVHRPSFYAE RFFKFMSNTV FRKNSSLKCS ENSP00000335333/1-668 RFIKKLEHTW KALVHDGDTV SVHRPSFYAE RFFKFMSNTV FRKNSSLKSS ENSBTAP00000053438/1-656 RFIKKLEHTW KALVHDGDTV SVHRPSFYAE RFFKFMSNTV FRKNSSLKSS BACU006476/1-906 RFIKKLEHTW KALVHDGDTI SVHRPSFYAE RFFKFMSNTV FRKNSSLKSS ENSTTRP00000005454/1-624 RFIKKLEHTW KALVHDGDTI SVHRPSFYAE RFFKFMSNTV FRKNSSLKSS 501 550 bmy_15764T0/1-374 PSKKGR-GAL LAVKPLGPTA AFSASQIPSE REDAQYDLRG ARSYPTLEDE ENSP00000335333/1-668 PSKKGRGGAL LAVKPLGPTA AFSASQIPSE REEAQYDLRG ARSYPTLEDE ENSBTAP00000053438/1-656 PSKKGR-GAL LAVKPLGPTA AFSASQIPSE REDAQYDLRG ARSYPTLEDE BACU006476/1-906 PSKKGR-GAL LAVKPLGPTA AFSASQIPSE REDAQYDLRG ARSYPTLEDE ENSTTRP00000005454/1-624 PSKKGR-GAL LAVKPLGPTA AFSASQIPSE REDAQYDLRG ARSYPTLEDE 551 600 bmy_15764T0/1-374 GRPDLLPCTP PSFEEATTAS IATTLSSTSL SIPERSPSET SEQPRYRRRT ENSP00000335333/1-668 GRPDLLPCTP PSFEEATTAS IATTLSSTSL SIPERSPSET SEQPRYRRRT ENSBTAP00000053438/1-656 GRPDLLPCTP PSFEEATTAS IATTLSSTSL SIPERSPSES SEQPRYRRRT BACU006476/1-906 GRPDLLPCTP PSFEEATTAS IATTLSSTSL SIPERSPSET SEQPRYRRRT ENSTTRP00000005454/1-624 GRPDLLPCTP PSFEEATTAS IATTLSSTSL SIPERSPSET SEQPRYRRRT 601 650 bmy_15764T0/1-374 QSSGQDGRPQ EEAHAEEDLQ QITVQVEPAC SVEIVVPKEE DAGEGASPAC ENSP00000335333/1-668 QSSGQDGRPQ EEPPAEEDLQ QITVQVEPAC SVEIVVPKEE DAGVEASPAG ENSBTAP00000053438/1-656 QSSGQDGRPQ EETHAEEDLQ QITVQVEPAC SVEIVVPKEE DAGEGVSPAC BACU006476/1-906 QSSGQDGRPQ EEAHAEEDLQ QITVQVEPAC SVEIVVPKEE DAGEGASPAC ENSTTRP00000005454/1-624 QSSGQDGRPQ EEAHAEEDLQ QITVQVEPAC SVEIVVPKEE DAGEGSSPAC 651 700 bmy_15764T0/1-374 ASAAVEVETA SQASE----- --PASQASDE EDAPATDIYF ---------- ENSP00000335333/1-668 ASAAVEVETA SQASD---EE GAPASQASDE EDAPATDIYF ---------- ENSBTAP00000053438/1-656 ASAAVEAETA SQASEPASQA SEPASQASDE EDAPATDIYF ---------- BACU006476/1-906 ASAAVEVETA SQASE----- --PASQASDE EDAPATDIYF FTDGRYWIYS ENSTTRP00000005454/1-624 ASAAVEVET- ---------- ---ASQASDE EDAPATDIYF ---------- 701 750 bmy_15764T0/1-374 ---------- ------PTDE RSWVYSPLHY STQAHPASDG ESDT------ ENSP00000335333/1-668 ---------- ------PTDE RSWVYSPLHY SAQAPPASDG ESDT------ ENSBTAP00000053438/1-656 ---------- ------PTDE RSWVYSPLHY STQAQPASDG ESDT------ BACU006476/1-906 PRHRRLRAVT LSSSGTPTDE RSWVYSPLHY STQAHPASDG ESDTVSAPRL ENSTTRP00000005454/1-624 ---------- ------PTDE RSWVYSPLHY STQAHPASDG ESDT------ 751 800 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSP00000335333/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053438/1-656 ---------- ---------- ---------- ---------- ---------- BACU006476/1-906 ASRAHSGLRP VALAKEGLRA WPPGTPGPTG KLRPRAGGAV GLYRAGACVQ ENSTTRP00000005454/1-624 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSP00000335333/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053438/1-656 ---------- ---------- ---------- ---------- ---------- BACU006476/1-906 PSWLLGSLAL GISCGARPGQ GRPGGCGSGP GPPWPHPRPC LCSNSYAGTD ENSTTRP00000005454/1-624 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_15764T0/1-374 ---------- ---------- ---------- ---------- ---------- ENSP00000335333/1-668 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000053438/1-656 ---------- ---------- ---------- ---------- ---------- BACU006476/1-906 GAECPLLPWL PGGPPHPLSP ELGSRPPGRR PSPSPSPRRR RSSGCSDPNP ENSTTRP00000005454/1-624 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_15764T0/1-374 ---------- ---- ENSP00000335333/1-668 ---------- ---- ENSBTAP00000053438/1-656 ---------- ---- BACU006476/1-906 GGSPGPGSPS APCA ENSTTRP00000005454/1-624 ---------- ----