KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 18:04:48 2014 Check: 00 .. Name: ENSTTRP00000004386/1-834 Len: 930 Check: 8091 Weight: 1.00 Name: ENSBTAP00000053444/1-843 Len: 930 Check: 4602 Weight: 1.00 Name: ENSP00000426255/1-840 Len: 930 Check: 3721 Weight: 1.00 Name: bmy_00308T0/1-668 Len: 930 Check: 7793 Weight: 1.00 Name: BACU007189/1-840 Len: 930 Check: 2721 Weight: 1.00 // 1 50 ENSTTRP00000004386/1-834 ------VVFD YSYRDYILSW YGSLSRDEGQ LYHLLSEDFW EVVRRLRHRL ENSBTAP00000053444/1-843 MDKALKEVFD YSYRDYILSW YGNLSRDEGQ LYHLLSEDFW EVARQLRHRL ENSP00000426255/1-840 MDKALKEVFD YSYRDYILSW YGNLSRDEGQ LYHLLLEDFW EIARQLHHRL bmy_00308T0/1-668 ---------- ---------- ---------- ---------- ---------- BACU007189/1-840 MDKALKEVFD YSYRDYILSW YGSLSRDEGQ LYHLLSEDFW EVARQLRHRL 51 100 ENSTTRP00000004386/1-834 SRVDMVRVVC SDVVRALLAH FCDLKAADAR HEEQPRPFVL HAFLRNSDDE ENSBTAP00000053444/1-843 SHVDMVKVVC NDVVRALLTH FCDLKAASGR HSEELSP-VL RALLHHSREK ENSP00000426255/1-840 SHVDVVKVVC NDVVRTLLTH FCDLKAANAR HEEQPRPFVL HACLRNSDDE bmy_00308T0/1-668 ---------- ---------- ---------- ---------- ---------- BACU007189/1-840 SHVDVVRVVC NDVVRALLAH FCDLKAANAR HEEQPRPFVL HAFLRNSDDE 101 150 ENSTTRP00000004386/1-834 VRFLQTCSRV LVFCLLPSKD VQSLSLRIML AEILTAKVLK PVVELLSNPD ENSBTAP00000053444/1-843 RKYLQNCHIT LRKCLARNVN FQPFGRRSML SLIMEIKVLK PVVELLSNPD ENSP00000426255/1-840 VRFLQTCSRV LVFCLLPSKD VQSLSLRIML AEILTTKVLK PVVELLSNPD bmy_00308T0/1-668 ---------- ---------- ---------- ---------- ---------- BACU007189/1-840 VRFLQTCSRV LVFCLLPSKD VQSLSLRIML AEILTAKVLK PVVELLSNPD 151 200 ENSTTRP00000004386/1-834 YINQMLLAQL EHREQVNEHH KRAYTYAPSY EEFIKLINSN SDVEFLKQLR ENSBTAP00000053444/1-843 YINQMLLAQL ERREHMNEHH KRAYTYAPSY EEFIKLINSN SDVEFLKQLR ENSP00000426255/1-840 YINQMLLAQL AYREQMNEHH KRAYTYAPSY EDFIKLINSN SDVEFLKQLR bmy_00308T0/1-668 ---------- ---------- ---------- ---------- ---------- BACU007189/1-840 YINQMLLAQL EHREQMNEHH KRAYTYAPSY EEFIKLINSN SDVEFLKQLR 201 250 ENSTTRP00000004386/1-834 YQIVVEIIQA TTISSFPQLK RHKGKETAAM KADLLRARNM KRYINQLTVA ENSBTAP00000053444/1-843 YQIVVEIIQA TTISSFPQLK RHKGKETAAM KADLLRARNM KRYINQLTVA ENSP00000426255/1-840 YQIVVEIIQA TTISSFPQLK RHKGKETAAM KADLLRARNM KRYINQLTVA bmy_00308T0/1-668 ---------- ---------- ---------M KADLLRARNM KRYINQLTVA BACU007189/1-840 YQIVVEIIQA TTISSFPQLK RHKGKETAAM KADLLRARNM KRYINQLTVA 251 300 ENSTTRP00000004386/1-834 KKQCEKRIRI LGGPAYDQQE DGPLDEGEGP QSQKILQFED ILANASYREH ENSBTAP00000053444/1-843 KKQCEKRIRV LGGPAYDQQE DGAFDEGEGP QSQKILQFED ILANTVYREQ ENSP00000426255/1-840 KKQCEKRIRI LGGPAYDQQE DGALDEGEGP QSQKILQFED ILANTFYREH bmy_00308T0/1-668 KKQCEKRIRI LGGPAYNQQE DGALDEGEGP QSQKILHFKD ILASTSYREH BACU007189/1-840 KKQCEKRIRI LGGPAYDQQE DGALDEGEGP QSQKILHFED ILASTSYREH 301 350 ENSTTRP00000004386/1-834 FRTYMERMDK RALISFWESV EYLKNAHKNE IPQLVGEIYQ NFFVESKEIS ENSBTAP00000053444/1-843 FRMYMERMDK RALISFWESV EYLKNANKNE IPQLVGEIYQ NFFVESKEIS ENSP00000426255/1-840 FGMYMERMDK RALISFWESV EHLKNANKNE IPQLVGEIYQ NFFVESKEIS bmy_00308T0/1-668 FRTYMERMDK RALMSFWESV EYLKNANKNE IPQLVGEIYQ NFFVESKEIS BACU007189/1-840 FRTYMERMDK RALMSFWESV EYLKNANKNE IPQLVGEIYQ NFFVENKEIS 351 400 ENSTTRP00000004386/1-834 VEKSLYKEIQ QCLVGNKGIE VFCKIQGDVY EMLKDRYYPS FIVSDLYEKL ENSBTAP00000053444/1-843 VEKSLYKEIQ QCLVGNKGIE VFCKIQGDVY ETLKDRYYPS FIVSDLYEKL ENSP00000426255/1-840 VEKSLYKEIQ QCLVGNKGIE VFYKIQEDVY ETLKDRYYPS FIVSDLYEKL bmy_00308T0/1-668 VEKSLYKEIQ QCLVGNKGIE VFCKIQGDVY ETLKDRYYPS FIVSDLYEKL BACU007189/1-840 VEKSLYKEIQ QCLVGNKGIE VFCKIQGDVY ETLKDRYYPS FIVSDLYEKL 401 450 ENSTTRP00000004386/1-834 MIKEEEKHVS QLISNKDEMN PGGEAGEESV DDGTSRINEQ TSFAVNKLRE ENSBTAP00000053444/1-843 MMKEEEKHVS QLVSNKDEVD SGGEVGEEAV DEGSSRVNEQ ASFAVNKLRE ENSP00000426255/1-840 LIKEEEKHAS QMISNKDEMG PRDEAGEEAV DDGTNQINEQ ASFAVNKLRE bmy_00308T0/1-668 MIKEEEKHVS QLISNKDEMD PGGEAGEESV DEGTSRINEQ TSFAVNKLRE BACU007189/1-840 MIKEEEKHVS QLISNKDEMD PGGEAGEASV DEGTSRINEQ TSFAVNKLRE 451 500 ENSTTRP00000004386/1-834 LNEKLDYKRQ ALNSIQNAPK PDKKXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053444/1-843 LNEKLEYKRQ ALNSIQNAPK PDKKIVSKLK EEIILIEKER TDLQLHMART ENSP00000426255/1-840 LNEKLEYKRQ ALNSIQNAPK PDKKIVSKLK DEIILIEKER TDLQLHMART bmy_00308T0/1-668 LNEKLDYKRQ ALNSIQNAPK PDKK------ ---------R KNAQNFSCT- BACU007189/1-840 LNEKLDYKRQ ALNSIQNAPK PDKKIVSKLK EEIILIEKER TELQLHMART 501 550 ENSTTRP00000004386/1-834 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053444/1-843 DWWCENLGLW KASITSGEVT EENGEQMPCY FVTVSLQEVG GVETKNWTVP ENSP00000426255/1-840 DWWCENLGMW KASITSGEVT EENGEQLPCY FVMVSLQEVG GVETKNWTVP bmy_00308T0/1-668 --WQEQIGGV RTSVCGKPPS P--------- --VESLQEVG GVETKNWTVP BACU007189/1-840 DWWCENLGMW KASITSGEVT EENGEQMPCY FVMVSLQEVG GVETKNWTVP 551 600 ENSTTRP00000004386/1-834 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053444/1-843 RRLSEFQNLH RRLSECFPSL KKVQLPSLSK LPFKSVDQKF MEKSKNQLNK ENSP00000426255/1-840 RRLSEFQNLH RKLSECVPSL KKVQLPSLSK LPFKSIDQKF MEKSKNQLNK bmy_00308T0/1-668 RRLSEFQNLH RKLSECFPSL KKVQLPSLSK LPFKSVDQKF MEKSKNQLNK BACU007189/1-840 RRLSEFQNLH RKLSECFPSL KKVQLPSLSK LPFKSVDQKF MEKSKNQLNK 601 650 ENSTTRP00000004386/1-834 XX-------- ---------- ---------- ---------- ---------- ENSBTAP00000053444/1-843 FL-------- ---------- ---------- ---------- ---------- ENSP00000426255/1-840 FL-------- ---------- ---------- ---------- ---------- bmy_00308T0/1-668 FLQVSKLSAY GRKISYLGVI GGGKGSGFGF RIAMKVNFPG QSTLCLHSWW BACU007189/1-840 FL-------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000004386/1-834 ---------- -------XNL LSDERLCQSE ALYAFLSPSP DYLKVIDVQG ENSBTAP00000053444/1-843 ---------- -------QNL LSDERLCQSE ALYAFLSPSP DYLKVIDVQG ENSP00000426255/1-840 ---------- -------QNL LSDERLCQSE ALYAFLSPSP DYLKVIDVQG bmy_00308T0/1-668 LPARRRTAQE ELILFLPQSL LSDERLCQSE ALYAFLSPSP DYLKVIDVQG BACU007189/1-840 ---------- -------QSL LSDERLCQSE ALYAFLSPSP DYLKVIDVQG 701 750 ENSTTRP00000004386/1-834 KKSTFSLSSF LERLPRDFFS HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000053444/1-843 KKASFSLASF LERLPRDFFS HQEEEAEEDS DLSDYGDDAD GRKDALAEPC ENSP00000426255/1-840 KKNSFSLSSF LERLPRDFFS HQEEETEEDS DLSDYGDDVD GRKDALAEPC bmy_00308T0/1-668 KKATFSLSSF LERLPRDFFS HQEEEAEEDS DLSDYGDDMD GRKDSLAEPC BACU007189/1-840 KKSTFSLSSF LERLPRDFFS HQEEEAEEDS DLSDYGDDMD GRKDSLAEPC 751 800 ENSTTRP00000004386/1-834 XXXXXXXXXX XXXFKWVRRT LIALVQVTFG RTINKQLRDA VDWALSEQMV ENSBTAP00000053444/1-843 FMLIGEIFEL RGMFKWVRRT LIALVQVTFG RTINKQIRDT VNWIFSEQML ENSP00000426255/1-840 FMLIGEIFEL RGMFKWVRRT LIALVQVTFG RTINKQIRDT VSWIFSEQML bmy_00308T0/1-668 FMLIGEIFEL RGMFKWVRRT LIALVQVTFG RTINKQIRDA VDWAVSEQMV BACU007189/1-840 FMLIGEIFEL RGMFKWVRRT LIALVQVTFG RTINKQIRDA VDWAVSEQMV 801 850 ENSTTRP00000004386/1-834 VYYIGALRDA LWPGGNLAPP NTIPSEEQ-- --SQETKRRA QQKLLENIPD ENSBTAP00000053444/1-843 VYYINLFRDA FWPNGKPAPP NTIPRQEQSR ARSQETKQRA QQKLLENIPD ENSP00000426255/1-840 VYYINIFRDA FWPNGKLAPP TTIRSKEQ-- --SQETKQRA QQKLLENIPD bmy_00308T0/1-668 VCYIGALRDA LWPAGNLAPP NTIPSEEQ-- --SQETKRRA QQKLLENIPD BACU007189/1-840 VCYIGALRDA LWPSGNLAPP NTIPSEEQ-- --SQETKRRA QQKLLENIPD 851 900 ENSTTRP00000004386/1-834 MLQSLVGQQN ARHGIIKIFN ALQETRANKH LLYVLMELLL IELCPELRTH ENSBTAP00000053444/1-843 MLQSLVGQQN ARYGIIKIFN ALQEKRANKH LLYVLMELLL TELCPELRTH ENSP00000426255/1-840 MLQSLVGQQN ARHGIIKIFN ALQETRANKH LLYALMELLL IELCPELRVH bmy_00308T0/1-668 MLQSLVGQQN ARHGIIKIFN ALQETRANKH LLYVLMELLL IELCPELRTH BACU007189/1-840 MLQSLVGQQN ARHGIIKIFN ALQETRANKH LLYVLMELLL IELCPELRTH 901 950 ENSTTRP00000004386/1-834 LDELKACQV- ---------- ---------- ENSBTAP00000053444/1-843 LDQLKACQV- ---------- ---------- ENSP00000426255/1-840 LDQLKAGQV- ---------- ---------- bmy_00308T0/1-668 LDELKACQNY EHCTVNFLPE DSEHSYIRVY BACU007189/1-840 LDELKACQV- ---------- ----------